mRNA_E-siliculosus-1a_F_contig14944.2874.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14944.2874.1
Unique NamemRNA_E-siliculosus-1a_F_contig14944.2874.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14944.2874.1 vs. uniprot
Match: D7FR39_ECTSI (Mx1, Mx-like dynamin-related GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR39_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 8.040e-28
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 MDNKESLSSEAAFFRQQPVFKSLPSSFFGVPNLTRRLTDLLVGRIKAALPNIKWEV 168
            MDNKESLSSEAAFFRQQPVFKSLPSSFFGVPNLTRRLTDLLVGRIKAALPNIKWE+
Sbjct:  294 MDNKESLSSEAAFFRQQPVFKSLPSSFFGVPNLTRRLTDLLVGRIKAALPNIKWEI 349
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14944.2874.1 vs. uniprot
Match: A0A836CJ76_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ76_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.500e-13
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MDNKESLSSEAAFFRQQPVFKSLPSSFFGVPNLTRRLTDLLVGRIKAALPNIKWEV 168
            MDNK +L++E  FFR+ P F  LP + FGV  LT RLTDLLV RI AALP IKWE+
Sbjct:  266 MDNKAALAAEHKFFREHPAFSGLPGTIFGVQCLTGRLTDLLVKRIGAALPAIKWEL 321
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14944.2874.1 vs. uniprot
Match: A0A7S3Y691_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y691_HETAK)

HSP 1 Score: 54.7 bits (130), Expect = 1.990e-7
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    7 NKESLSSEAAFFRQQPVFKSLPSSFFGVPNLTRRLTDLLVGRIKAALPNIKWEV 168
            ++++ + EAAFFR  P F  +P    GV  LT +L++LLV RIK ALP +KWE+
Sbjct:  155 SQQAAAREAAFFRNHPHFADIPPDLRGVRQLTPKLSNLLVERIKEALPFLKWEL 208
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14944.2874.1 vs. uniprot
Match: A0A7S3Y6A1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6A1_HETAK)

HSP 1 Score: 54.7 bits (130), Expect = 3.000e-7
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    7 NKESLSSEAAFFRQQPVFKSLPSSFFGVPNLTRRLTDLLVGRIKAALPNIKWEV 168
            ++++ + EAAFFR  P F  +P    GV  LT +L++LLV RIK ALP +KWE+
Sbjct:  272 SQQAAAREAAFFRNHPHFADIPPDLRGVRQLTPKLSNLLVERIKEALPFLKWEL 325
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14944.2874.1 vs. uniprot
Match: A0A7J6EJF4_CANSA (Uncharacterized protein n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6EJF4_CANSA)

HSP 1 Score: 48.9 bits (115), Expect = 3.410e-5
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   13 ESLSSEAAFFRQQPVFKSLPSSFFGVPNLTRRLTDLLVGRIKAALPNIKWEV 168
            ++LS E  FFR  PV+  LPSS  G+P L+R+L  +L   I+ ALP++K E+
Sbjct:  242 DALSREETFFRDHPVYSGLPSSC-GIPQLSRKLNQILEQHIRMALPSLKSEL 292
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14944.2874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FR39_ECTSI8.040e-2898.21Mx1, Mx-like dynamin-related GTPase n=1 Tax=Ectoca... [more]
A0A836CJ76_9STRA4.500e-1362.50P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3Y691_HETAK1.990e-748.15Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y6A1_HETAK3.000e-748.15Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7J6EJF4_CANSA3.410e-546.15Uncharacterized protein n=3 Tax=Cannabis sativa Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14944contigE-siliculosus-1a_F_contig14944:130..297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size168
Model size168
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.I
EggNOG OGsCOG0699@1,KOG0446@2759
EggNOG free text desc.mitochondrial fission
KEGG koko:K20291
Seed eggNOG ortholog2880.D7FR39
Seed ortholog evalue2.3e-23
Seed ortholog score114.0
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928006.2034514-CDS-E-siliculosus-1a_F_contig14944:129..2971622928006.2034514-CDS-E-siliculosus-1a_F_contig14944:129..297Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14944 130..297 +
1696318769.3556814-CDS-E-siliculosus-1a_F_contig14944:129..2971696318769.3556814-CDS-E-siliculosus-1a_F_contig14944:129..297Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14944 130..297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14944.2874.1prot_E-siliculosus-1a_F_contig14944.2874.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14944 130..297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14944.2874.1

>prot_E-siliculosus-1a_F_contig14944.2874.1 ID=prot_E-siliculosus-1a_F_contig14944.2874.1|Name=mRNA_E-siliculosus-1a_F_contig14944.2874.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=56bp
MDNKESLSSEAAFFRQQPVFKSLPSSFFGVPNLTRRLTDLLVGRIKAALP
NIKWEV
back to top

mRNA from alignment at E-siliculosus-1a_F_contig14944:130..297+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14944.2874.1 ID=mRNA_E-siliculosus-1a_F_contig14944.2874.1|Name=mRNA_E-siliculosus-1a_F_contig14944.2874.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=168bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14944:130..297+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGATAACAAGGAATCCCTCAGCTCGGAGGCAGCCTTCTTCCGTCAGCA
GCCGGTCTTCAAGAGCCTCCCCTCGTCGTTTTTTGGAGTCCCGAACCTGA
CTCGCAGACTCACGGACCTTCTCGTGGGTCGCATCAAGGCCGCTCTCCCC
AACATCAAGTGGGAGGTC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14944:130..297+

>mRNA_E-siliculosus-1a_F_contig14944.2874.1 ID=mRNA_E-siliculosus-1a_F_contig14944.2874.1|Name=mRNA_E-siliculosus-1a_F_contig14944.2874.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=336bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14944:130..297+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGATAACAAGGAATCCCTCAGCTCGGAGGCAGCCTTCTTCCGTCAGCA
GCCGGTCTTCAAGAGCCTCCCCTCGTCGTTTTTTGGAGTCCCGAACCTGA
CTCGCAGACTCACGGACCTTCTCGTGGGTCGCATCAAGGCCGCTCTCCCC
AACATCAAGTGGGAGGTCATGGATAACAAGGAATCCCTCAGCTCGGAGGC
AGCCTTCTTCCGTCAGCAGCCGGTCTTCAAGAGCCTCCCCTCGTCGTTTT
TTGGAGTCCCGAACCTGACTCGCAGACTCACGGACCTTCTCGTGGGTCGC
ATCAAGGCCGCTCTCCCCAACATCAAGTGGGAGGTC
back to top