mRNA_E-siliculosus-1a_F_contig1493.2870.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1493.2870.1
Unique NamemRNA_E-siliculosus-1a_F_contig1493.2870.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1493.2870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1493contigE-siliculosus-1a_F_contig1493:10591..11200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size228
Model size350
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1493.2870.1prot_E-siliculosus-1a_F_contig1493.2870.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1493 10713..11200 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928005.221291-UTR-E-siliculosus-1a_F_contig1493:10590..107121622928005.221291-UTR-E-siliculosus-1a_F_contig1493:10590..10712Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1493 10591..10712 -
1696318768.7456038-UTR-E-siliculosus-1a_F_contig1493:10590..107121696318768.7456038-UTR-E-siliculosus-1a_F_contig1493:10590..10712Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1493 10591..10712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928005.2321024-CDS-E-siliculosus-1a_F_contig1493:10712..108901622928005.2321024-CDS-E-siliculosus-1a_F_contig1493:10712..10890Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1493 10713..10890 -
1696318768.7544234-CDS-E-siliculosus-1a_F_contig1493:10712..108901696318768.7544234-CDS-E-siliculosus-1a_F_contig1493:10712..10890Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1493 10713..10890 -
1622928005.2446892-CDS-E-siliculosus-1a_F_contig1493:11150..112001622928005.2446892-CDS-E-siliculosus-1a_F_contig1493:11150..11200Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1493 11151..11200 -
1696318768.7635605-CDS-E-siliculosus-1a_F_contig1493:11150..112001696318768.7635605-CDS-E-siliculosus-1a_F_contig1493:11150..11200Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1493 11151..11200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1493.2870.1

>prot_E-siliculosus-1a_F_contig1493.2870.1 ID=prot_E-siliculosus-1a_F_contig1493.2870.1|Name=mRNA_E-siliculosus-1a_F_contig1493.2870.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=76bp
PLPPAAPARSAGRWRQGPSLASPFPCGLSTLLLRPRRFSNGWLTPGRHQG
GVPACDPSQGMRTPSVRETVRWNHS*
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mRNA from alignment at E-siliculosus-1a_F_contig1493:10591..11200-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1493.2870.1 ID=mRNA_E-siliculosus-1a_F_contig1493.2870.1|Name=mRNA_E-siliculosus-1a_F_contig1493.2870.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=610bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1493:10591..11200- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCACTCCCACCAGCTGCCCCGGCTCGATCCGCAGGTCGATGGCGTCAAGG
GTCAATCCTGAAAATCACAAGTCGTAAATGGATCGTACATAACAACGTGG
GTGGGCTTGTGAGTATGTCGATGACATAACTCGTACGGTCCTCAGTCCGT
GGTACGAACAGTAGAGTTGTCCAGTTGTACGCGGACGGGAAGGACGCATG
GTGCCGACAACACAGAACTCCATAACACAACACCAACACAACACAGCCTA
TCATACAACGTGGCGCCATTTCCAGGCCTTTCCTGTGCTATGCATGCTAC
GACACAACAGCCCTTCCCTTGCTTCCCCGTTTCCATGCGGGCTCAGTACT
CTCTTGTTGAGGCCACGGCGGTTTTCAAACGGCTGGTTGACGCCAGGTCG
ACATCAGGGAGGGGTCCCGGCCTGTGATCCTTCACAAGGCATGAGAACCC
CGTCCGTCAGAGAGACGGTGAGATGGAACCATTCTTAGCATCGCCCCGTA
TCTTGAGGCATGGAATCCCCACACGCGAGTGGCAGACGTGGATTTTCACC
TCCAGCGTTCGTTTCAGCTTCGTTGTCCTCCTCTACAGGCGCAGCGTCAG
CGCCGTCGTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1493:10591..11200-

>mRNA_E-siliculosus-1a_F_contig1493.2870.1 ID=mRNA_E-siliculosus-1a_F_contig1493.2870.1|Name=mRNA_E-siliculosus-1a_F_contig1493.2870.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1493:10591..11200- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCACTCCCACCAGCTGCCCCGGCTCGATCCGCAGGTCGATGGCGTCAAGG
CCACTCCCACCAGCTGCCCCGGCTCGATCCGCAGGTCGATGGCGTCAAGG
CCCTTCCCTTGCTTCCCCGTTTCCATGCGGGCTCAGTACTCTCTTGTTGA
GGCCACGGCGGTTTTCAAACGGCTGGTTGACGCCAGGTCGACATCAGGGA
GGGGTCCCGGCCTGTGATCCTTCACAAGGCATGAGAACCCCGTCCGTCAG
AGAGACGGTGAGATGGAACCATTCTTAGCCCTTCCCTTGCTTCCCCGTTT
CCATGCGGGCTCAGTACTCTCTTGTTGAGGCCACGGCGGTTTTCAAACGG
CTGGTTGACGCCAGGTCGACATCAGGGAGGGGTCCCGGCCTGTGATCCTT
CACAAGGCATGAGAACCCCGTCCGTCAGAGAGACGGTGAGATGGAACCAT
TCTTAG
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