mRNA_E-siliculosus-1a_F_contig14037.2392.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14037.2392.1
Unique NamemRNA_E-siliculosus-1a_F_contig14037.2392.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2392.1 vs. uniprot
Match: D8LP31_ECTSI (EsV-1-213 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP31_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 2.720e-90
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 2
Query:    2 AYIMLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRAYTDKTKYGIECGPVVGSLDIIRQRPVDSVGHMDGSVLGSIHLTYGERAGVAAKAACNTPQGGPTLFDASVGAKLTEIMAHFDSQLWKTRKRLKMANTVSTNL 442
            AYIMLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFR YT+KTKYGIECGPVVGSLDIIRQRPVDSVG MDGSVLGSIHLTYGERAGVAA AACNTPQGGPTLFDASVGAKLTEIMAHFDSQLWKTRKRLKMANTVS NL
Sbjct:  287 AYIMLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRTYTEKTKYGIECGPVVGSLDIIRQRPVDSVGRMDGSVLGSIHLTYGERAGVAAMAACNTPQGGPTLFDASVGAKLTEIMAHFDSQLWKTRKRLKMANTVSNNL 433          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2392.1 vs. uniprot
Match: A0A6H5JVT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT4_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 2.740e-67
Identity = 119/147 (80.95%), Postives = 122/147 (82.99%), Query Frame = 2
Query:    2 AYIMLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRAYTDKTKYGIECGPVVGSLDIIRQRPVDSVGHMDGSVLGSIHLTYGERAGVAAKAACNTPQGGPTLFDASVGAKLTEIMAHFDSQLWKTRKRLKMANTVSTNL 442
            AYIMLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRAYT+KTKYGIECGPVVGSLDIIRQRPVDSVG MDGSVLGSIHLT  +R+                     V AKLTEIMAHFDSQLWKTRKRLKMANTVSTNL
Sbjct:  287 AYIMLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRAYTEKTKYGIECGPVVGSLDIIRQRPVDSVGRMDGSVLGSIHLTAAQRSSTL------------------VSAKLTEIMAHFDSQLWKTRKRLKMANTVSTNL 415          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2392.1 vs. uniprot
Match: B2KWI6_ECTSI (EsV-1-213-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI6_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 7.230e-46
Identity = 79/146 (54.11%), Postives = 105/146 (71.92%), Query Frame = 2
Query:    5 YIMLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRAYTDKTKYGIECGPVVGSLDIIRQRPVDSVGHMDGSVLGSIHLTYGERAGVAAKAACNTPQGGPTLFDASVGAKLTEIMAHFDSQLWKTRKRLKMANTVSTNL 442
            Y +LE+AC++KYIEG HV D Y  F+AT +APGD   IA L ++Y + +K+G+E G VVG +D+IR +PV+++G +DG VLG+I  TYGERA    +AACN  + G TLFD SV  KL EIMAHFD +LWK RK+ K+   V+ NL
Sbjct:  283 YTLLEKACENKYIEGVHVADVYAAFRATMTAPGDMNSIAALVQSYKEHSKHGVESGAVVGIIDVIRDKPVEAIGKIDGGVLGTIFQTYGERACAEVRAACNKLESGSTLFDDSVSNKLREIMAHFDCELWKARKKEKVERIVAANL 428          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2392.1 vs. uniprot
Match: A0A6H5L2T2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2T2_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.020e-43
Identity = 75/146 (51.37%), Postives = 102/146 (69.86%), Query Frame = 2
Query:    5 YIMLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRAYTDKTKYGIECGPVVGSLDIIRQRPVDSVGHMDGSVLGSIHLTYGERAGVAAKAACNTPQGGPTLFDASVGAKLTEIMAHFDSQLWKTRKRLKMANTVSTNL 442
            Y MLE+AC+DKYIEG H+ D Y +F+AT +AP D   IA L R+Y    K+G+E G VVG +D+IR + V+++G +DG VLGSI   YGERA +  +A C+  +GG +LFD SV  KL EI+AHFD +LWK RK+ K+   V+ N+
Sbjct:  286 YTMLEKACEDKYIEGVHIADVYAVFRATMTAPDDMNSIAALVRSYNQHAKHGVESGAVVGVIDVIRDKSVEAIGKIDGGVLGSIFSAYGERACLKVQAECSRLEGGSSLFDDSVSNKLAEILAHFDCELWKARKKDKVERVVAANM 431          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2392.1 vs. uniprot
Match: A0A6H5K0T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T8_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 4.890e-42
Identity = 73/146 (50.00%), Postives = 101/146 (69.18%), Query Frame = 2
Query:    5 YIMLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRAYTDKTKYGIECGPVVGSLDIIRQRPVDSVGHMDGSVLGSIHLTYGERAGVAAKAACNTPQGGPTLFDASVGAKLTEIMAHFDSQLWKTRKRLKMANTVSTNL 442
            Y MLE+AC+DKYI+G H+ D Y +F+AT +AP D   IA L R+Y    K+G+E G VVG +D+IR + V+++G +DG VLGSI   YGERA +  +  C+  +GG +LFD SV  K TEI+AHFD +LWK RK+ K+   V+ N+
Sbjct:  286 YTMLEKACEDKYIKGVHIADVYAVFRATMTAPDDMNSIAALVRSYNQHAKHGVESGAVVGVIDVIRDKSVEAIGKIDGGVLGSIFSAYGERACLKVQPECSRLEGGSSLFDDSVSNKQTEILAHFDCELWKARKKDKVERVVAANM 431          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2392.1 vs. uniprot
Match: B2KWI7_ECTSI (EsV-1-213-like protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI7_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 7.660e-42
Identity = 73/146 (50.00%), Postives = 101/146 (69.18%), Query Frame = 2
Query:    5 YIMLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRAYTDKTKYGIECGPVVGSLDIIRQRPVDSVGHMDGSVLGSIHLTYGERAGVAAKAACNTPQGGPTLFDASVGAKLTEIMAHFDSQLWKTRKRLKMANTVSTNL 442
            Y MLE+AC+ KYI+G H+ D Y +F+AT +AP D   I  L R+Y    K+G+E G VVG +D+IR + V+++G +DG VLGSI   YGERA +  +A C+  +GG +LFD SV  KLTEI+AHFD +LWK RK+ K+   V+ N+
Sbjct:  286 YTMLEKACEHKYIKGVHIADVYAVFRATMTAPDDMNSITALVRSYIQHAKHGVESGAVVGVIDVIRDKSVEAIGKIDGGVLGSIFPAYGERACLKVQAECSGLEGGSSLFDDSVSNKLTEILAHFDCELWKARKKDKVERVVAANM 431          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2392.1 vs. uniprot
Match: D7FZG9_ECTSI (EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG9_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 8.960e-36
Identity = 73/147 (49.66%), Postives = 101/147 (68.71%), Query Frame = 2
Query:    5 YIMLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRAYTDKTKYGIECGPVVGSLDIIRQRPVDSVGHMDGSVLGSIHLTYGERAGVAAKAACNTPQGGP-TLFDASVGAKLTEIMAHFDSQLWKTRKRLKMANTVSTNL 442
            Y+ LERA ++ YI G HV D + L+ ATRSAPGDA+ IA L   Y   +K G+E G VV  LD++R++P+++VG +DGSVLG+I  TYG+R  +  +A C   Q G  +LFD+SV  KL EI+ H D++LWK RKRLK+   V+ +L
Sbjct:   91 YVCLERATEESYIGGKHVADCFALYNATRSAPGDAKTIAGLVNHYRLNSKIGVESGAVVCVLDVLREKPMEAVGKIDGSVLGAITSTYGKRVSLDVQARCLGLQAGEHSLFDSSVSNKLGEIINHADTKLWKARKRLKVELKVNDSL 237          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2392.1 vs. uniprot
Match: D7FHJ1_ECTSI (EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ1_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 6.570e-35
Identity = 65/145 (44.83%), Postives = 95/145 (65.52%), Query Frame = 2
Query:   11 MLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRAYTDKTKYGIECGPVVGSLDIIRQRPVDSVGHMDGSVLGSIHLTYGERAGVAAKAACNTP-QGGPTLFDASVGAKLTEIMAHFDSQLWKTRKRLKMANTVSTNL 442
            MLE+   ++YIEG +V DAY +++ T SAPGDA+ I  L  AY D +K+G++   +VG +D++R +P D +G +DG VLG+I  TYGE+  V  +  CN   QGG TLFD SV  KL E++ HFD ++ + RK+ KM   +  N+
Sbjct:  146 MLEKFSGERYIEGLYVADAYAVYRGTMSAPGDAKSITALVNAYRDHSKHGVDSSAIVGIIDVLRCKPSDGIGKIDGGVLGTIFYTYGEKDSVRVQEDCNNKLQGGVTLFDYSVSGKLGEVITHFDKEIPRARKKHKMEMIIRGNM 290          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2392.1 vs. uniprot
Match: Q8QN77_ESV1K (EsV-1-213 n=2 Tax=root TaxID=1 RepID=Q8QN77_ESV1K)

HSP 1 Score: 137 bits (344), Expect = 1.260e-34
Identity = 73/147 (49.66%), Postives = 98/147 (66.67%), Query Frame = 2
Query:    5 YIMLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRAYTDKTKYGIECGPVVGSLDIIRQRPVDSVGHMDGSVLGSIHLTYGERAGVAAKAACNTPQGGP-TLFDASVGAKLTEIMAHFDSQLWKTRKRLKMANTVSTNL 442
            Y+ LERA ++ YI G HV D + L+ ATRSAPGDA+ IA L   Y   +K G+E G VV  LD++R++P+++VG +DGSVLG+I  TYG+R  +  +A C   Q G  +LFD SV  KL EI+ H D  LWK RKRLK+   V+ +L
Sbjct:  281 YVCLERATEESYIGGKHVADCFALYNATRSAPGDAKTIAGLANHYRLNSKIGVESGAVVCVLDVLREKPMEAVGKIDGSVLGAITSTYGQRVSLDVQARCLGLQAGEHSLFDCSVSNKLGEIINHADIALWKARKRLKVELKVNDSL 427          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2392.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.290e-33
Identity = 72/147 (48.98%), Postives = 97/147 (65.99%), Query Frame = 2
Query:    5 YIMLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRAYTDKTKYGIECGPVVGSLDIIRQRPVDSVGHMDGSVLGSIHLTYGERAGVAAKAACNTPQGGP-TLFDASVGAKLTEIMAHFDSQLWKTRKRLKMANTVSTNL 442
            Y+ LERA +D YI G HV D + L+ ATRSAPGDA+ I  L   Y   +K G+E G VV  LD++R++P+++VG +DGSVLG+I  TYG+R  +  +A C   Q G  +LFD SV  KL EI+ H D +LWK RKRL +   V+ +L
Sbjct:  816 YVCLERATEDCYIGGKHVADCFALYNATRSAPGDAKTIKGLVNHYRLNSKIGVESGAVVCVLDVLREKPMEAVGKIDGSVLGAITSTYGKRVSLDVQARCLGLQAGEHSLFDCSVSNKLGEIINHADMKLWKARKRLIVELKVNDSL 962          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LP31_ECTSI2.720e-9096.60EsV-1-213 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP... [more]
A0A6H5JVT4_9PHAE2.740e-6780.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B2KWI6_ECTSI7.230e-4654.11EsV-1-213-like protein 2 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L2T2_9PHAE2.020e-4351.37Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0T8_9PHAE4.890e-4250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B2KWI7_ECTSI7.660e-4250.00EsV-1-213-like protein 1 n=1 Tax=Ectocarpus silicu... [more]
D7FZG9_ECTSI8.960e-3649.66EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FHJ1_ECTSI6.570e-3544.83EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QN77_ESV1K1.260e-3449.66EsV-1-213 n=2 Tax=root TaxID=1 RepID=Q8QN77_ESV1K[more]
A0A6H5JJP2_9PHAE2.290e-3348.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14037contigE-siliculosus-1a_F_contig14037:2..443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size432
Model size443
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927919.3812995-UTR-E-siliculosus-1a_F_contig14037:1..111622927919.3812995-UTR-E-siliculosus-1a_F_contig14037:1..11Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14037 2..11 +
1696318736.896906-UTR-E-siliculosus-1a_F_contig14037:1..111696318736.896906-UTR-E-siliculosus-1a_F_contig14037:1..11Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14037 2..11 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927919.3957906-CDS-E-siliculosus-1a_F_contig14037:11..4431622927919.3957906-CDS-E-siliculosus-1a_F_contig14037:11..443Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14037 12..443 +
1696318736.9062848-CDS-E-siliculosus-1a_F_contig14037:11..4431696318736.9062848-CDS-E-siliculosus-1a_F_contig14037:11..443Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14037 12..443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14037.2392.1prot_E-siliculosus-1a_F_contig14037.2392.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14037 12..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14037.2392.1

>prot_E-siliculosus-1a_F_contig14037.2392.1 ID=prot_E-siliculosus-1a_F_contig14037.2392.1|Name=mRNA_E-siliculosus-1a_F_contig14037.2392.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=144bp
MLERACQDKYIEGFHVGDAYGLFKATRSAPGDAERIATLFRAYTDKTKYG
IECGPVVGSLDIIRQRPVDSVGHMDGSVLGSIHLTYGERAGVAAKAACNT
PQGGPTLFDASVGAKLTEIMAHFDSQLWKTRKRLKMANTVSTNL
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mRNA from alignment at E-siliculosus-1a_F_contig14037:2..443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14037.2392.1 ID=mRNA_E-siliculosus-1a_F_contig14037.2392.1|Name=mRNA_E-siliculosus-1a_F_contig14037.2392.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=442bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14037:2..443+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCCTACATAATGTTGGAGCGGGCGTGCCAAGACAAGTACATTGAGGGGT TCCACGTAGGAGACGCGTACGGTCTTTTTAAGGCAACCCGCTCGGCCCCG GGTGACGCCGAGAGGATAGCTACACTGTTTCGGGCGTACACCGACAAAAC AAAGTATGGGATCGAGTGCGGACCTGTGGTTGGGAGTCTGGACATAATCC GACAGCGACCCGTGGACTCTGTCGGCCACATGGACGGCTCAGTGTTGGGT TCCATACATTTGACGTATGGAGAGAGAGCAGGCGTCGCGGCGAAGGCTGC TTGCAACACACCGCAGGGCGGCCCAACGCTCTTCGACGCTAGTGTCGGCG CGAAACTGACGGAGATCATGGCGCACTTCGACAGCCAGCTTTGGAAAACG AGGAAAAGGCTCAAAATGGCAAACACCGTCAGCACCAACCTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14037:2..443+

>mRNA_E-siliculosus-1a_F_contig14037.2392.1 ID=mRNA_E-siliculosus-1a_F_contig14037.2392.1|Name=mRNA_E-siliculosus-1a_F_contig14037.2392.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14037:2..443+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTGGAGCGGGCGTGCCAAGACAAGTACATTGAGGGGTTCCACGTAGG
AGACGCGTACGGTCTTTTTAAGGCAACCCGCTCGGCCCCGGGTGACGCCG
AGAGGATAGCTACACTGTTTCGGGCGTACACCGACAAAACAAAGTATGGG
ATCGAGTGCGGACCTGTGGTTGGGAGTCTGGACATAATCCGACAGCGACC
CGTGGACTCTGTCGGCCACATGGACGGCTCAGTGTTGGGTTCCATACATT
TGACGTATGGAGAGAGAGCAGGCGTCGCGGCGAAGGCTGCTTGCAACACA
CCGCAGGGCGGCCCAACGCTCTTCGACGCTAGTGTCGGCGCGAAACTGAC
GGAGATCATGGCGCACTTCGACAGCCAGCTTTGGAAAACGAGGAAAAGGC
TCAAAATGGCAAACACCGTCAGCACCAACCTGATGTTGGAGCGGGCGTGC
CAAGACAAGTACATTGAGGGGTTCCACGTAGGAGACGCGTACGGTCTTTT
TAAGGCAACCCGCTCGGCCCCGGGTGACGCCGAGAGGATAGCTACACTGT
TTCGGGCGTACACCGACAAAACAAAGTATGGGATCGAGTGCGGACCTGTG
GTTGGGAGTCTGGACATAATCCGACAGCGACCCGTGGACTCTGTCGGCCA
CATGGACGGCTCAGTGTTGGGTTCCATACATTTGACGTATGGAGAGAGAG
CAGGCGTCGCGGCGAAGGCTGCTTGCAACACACCGCAGGGCGGCCCAACG
CTCTTCGACGCTAGTGTCGGCGCGAAACTGACGGAGATCATGGCGCACTT
CGACAGCCAGCTTTGGAAAACGAGGAAAAGGCTCAAAATGGCAAACACCG
TCAGCACCAACCTG
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