mRNA_E-siliculosus-1a_F_contig140.2369.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig140.2369.1
Unique NamemRNA_E-siliculosus-1a_F_contig140.2369.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig140.2369.1 vs. uniprot
Match: D7FX07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX07_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 1.740e-96
Identity = 201/316 (63.61%), Postives = 229/316 (72.47%), Query Frame = 1 
Query:    1 PALA------PDKKRQHNTSKSSKNVLRNPRRRTSRTSDERQRVRGSPNRYRNRGSEGEGGRTRERATQVQDRQSEIQPF*VSSRVIMVQYRPETN--NEAKLRDVRAAEEIHHVQHQGSLQANRTA--QTADTRSATQNILTQAANTDMHMSMHHDRIKSTKVEQLEKKRKKLEKDEEKYRGLVNAAWIAFPVTMVVYVLTCCSCCLPELMKERKRNAQRKINEVDAELLALTNVNVRRNFAISDSVSATNEDRRYTGTADPHVESVYAAHPPVSTITTTAXXXXXXXXXXXATCPSAPPDYHEYMSGVTQVHVQ 918
            PALA      PD   +HNTSKSSK VLR  ++             G P        + EG + +E   + ++RQ +I P         V+Y+ E++  +  +    R + E+  ++ + +  + R A  +    R  T  +  +AANTDMHMSMHHDRIKSTKVEQLEKKRKKLEKDEEKYRGLVNAAWIAFPVTMVVYVLTCCSCCLPELMKE+KRNAQRKIN VDAELLALTNVNVRRNFAISDSVSATNED R+TGTADPHVESVYAAHPPVSTITTTAXXXXXXXXXXXATCPSAPPDYHEYMS V QVHVQ
Sbjct:    7 PALALAPIHFPDNNEKHNTSKSSKYVLRISQKENVEDVGRAPETAGEPEAT----QKIEGVKEKEAGPETRERQVKINP---------VEYQAESSWCSTGRRPTTRQSSEMFVLRKRCTTSSIRGAFRRIGRPRLLTPEVQRKAANTDMHMSMHHDRIKSTKVEQLEKKRKKLEKDEEKYRGLVNAAWIAFPVTMVVYVLTCCSCCLPELMKEKKRNAQRKINVVDAELLALTNVNVRRNFAISDSVSATNEDHRFTGTADPHVESVYAAHPPVSTITTTAXXXXXXXXXXXATCPSAPPDYHEYMSSVKQVHVQ 309
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig140.2369.1 vs. uniprot
Match: D8LGI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGI8_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 1.310e-88
Identity = 163/225 (72.44%), Postives = 182/225 (80.89%), Query Frame = 1 
Query:  244 MVQYRPETNNEAKLRDVRAAEEIHHVQHQGSLQANRTAQTADTRSATQNILTQAANTDMHMSMHHDRIKSTKVEQLEKKRKKLEKDEEKYRGLVNAAWIAFPVTMVVYVLTCCSCCLPELMKERKRNAQRKINEVDAELLALTNVNVRRNFAISDSVSATNEDRRYTGTADPHVESVYAAHPPVSTITTTAXXXXXXXXXXXATCPSAPPDYHEYMSGVTQVHVQ 918
            M Q R ETNNEAKLRDVRAAEEI HV+ QG+LQ +RTAQT+DTR+ATQNILTQAAN DM MS+ HDRIKS KVEQL+KK++KLEKDEEK+RGL N AW+AFPVT +V+V T     LPELMKERKRNAQRKINEVDAELLALTNVNV RNFAISDSVSATN DRRYTGTADP +ESVYAA              XXXXXXXX      PP+YH+++ GVTQVH+Q
Sbjct:    1 MTQQRAETNNEAKLRDVRAAEEIEHVRQQGNLQGSRTAQTSDTRNATQNILTQAANMDMQMSIQHDRIKSAKVEQLQKKKQKLEKDEEKFRGLANVAWMAFPVTAIVFVCTXXXXXLPELMKERKRNAQRKINEVDAELLALTNVNVHRNFAISDSVSATNHDRRYTGTADPQMESVYAA-------------PXXXXXXXXXXXXXXPPNYHDFVGGVTQVHIQ 212
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig140.2369.1 vs. uniprot
Match: A0A6H5JSH8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSH8_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 1.270e-64
Identity = 144/219 (65.75%), Postives = 169/219 (77.17%), Query Frame = 1 
Query:  262 ETNNEAKLRDVRAAEEIHHVQHQGSLQANRTAQTADTRSATQNILTQAANTDMHMSMHHDRIKSTKVEQLEKKRKKLEKDEEKYRGLVNAAWIAFPVTMVVYVLTCCSCCLPELMKERKRNAQRKINEVDAELLALTNVNVRRNFAISDSVSATNEDRRYTGTADPHVESVYAAHPPVSTITTTAXXXXXXXXXXXATCPSAPPDYHEYMSGVTQVHVQ 918
            ETNNEAKLR+VRAAEEI HV+ Q +LQ +RTAQT+DTR+ATQNILTQAAN DM MS+ HDRIKS KVEQL++K++KL+KDE+K+RGL N AWIAFPVT +V              +ER+RNAQRKINEVDAELL LTNVNV R+FAISDSVSATN DRR TGT DP +ESVYAA              XXXXXXXX    +APP+YH+++ GVTQVH+Q
Sbjct: 1600 ETNNEAKLRNVRAAEEIEHVRQQENLQGSRTAQTSDTRNATQNILTQAANMDMQMSIQHDRIKSAKVEQLQRKKEKLQKDEDKFRGLANVAWIAFPVTAIV-------------AEERERNAQRKINEVDAELLTLTNVNVHRSFAISDSVSATNHDRRCTGTVDPQMESVYAA-------------PXXXXXXXXXXRSAAPPNYHDFVGGVTQVHIQ 1792
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig140.2369.1 vs. uniprot
Match: A0A6H5KZI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI7_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 4.230e-32
Identity = 93/179 (51.96%), Postives = 107/179 (59.78%), Query Frame = 1 
Query:  382 TQNILTQAANTDMHMSMHHDRIKSTKVEQLEKKRKKLEKDEEKYRGLVNAAWIAFPVTMVVYVLTCCSCCLPELMKERKRNAQRKINEVDAELLALTNVNVRRNFAISDSVSATNEDRRYTGTADPHVESVYAAHPPVSTITTTAXXXXXXXXXXXATCPSAPPDYHEYMSGVTQVHVQ 918
            T +ILTQAAN DM MS+ HDRIKS KVEQL++K++KL                                      +ER+RNAQRKINEVDAELLALTNVNV R+FAISDSVSATN DRRYTGTADP +ES YAA              XXXXXXXX          H+++ GVTQVH+Q
Sbjct:   10 TPDILTQAANMDMQMSIQHDRIKSAKVEQLQRKKEKL-------------------------------------AEERERNAQRKINEVDAELLALTNVNVHRSFAISDSVSATNHDRRYTGTADPQMESAYAA-------------PXXXXXXXXXXXXXXXXXXHDFVGGVTQVHIQ 138
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig140.2369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FX07_ECTSI1.740e-9663.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGI8_ECTSI1.310e-8872.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSH8_9PHAE1.270e-6465.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KZI7_9PHAE4.230e-3251.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig140contigE-siliculosus-1a_F_contig140:48281..55538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size678
Model size1648
Exons4
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig140.2369.1prot_E-siliculosus-1a_F_contig140.2369.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig140 49008..51474 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927914.3178759-UTR-E-siliculosus-1a_F_contig140:48280..490071622927914.3178759-UTR-E-siliculosus-1a_F_contig140:48280..49007Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 48281..49007 -
1696318735.3835466-UTR-E-siliculosus-1a_F_contig140:48280..490071696318735.3835466-UTR-E-siliculosus-1a_F_contig140:48280..49007Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 48281..49007 -
1622927914.3651907-UTR-E-siliculosus-1a_F_contig140:51474..515121622927914.3651907-UTR-E-siliculosus-1a_F_contig140:51474..51512Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 51475..51512 -
1696318735.4138377-UTR-E-siliculosus-1a_F_contig140:51474..515121696318735.4138377-UTR-E-siliculosus-1a_F_contig140:51474..51512Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 51475..51512 -
1622927914.3796625-UTR-E-siliculosus-1a_F_contig140:55333..555381622927914.3796625-UTR-E-siliculosus-1a_F_contig140:55333..55538Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 55334..55538 -
1696318735.4216964-UTR-E-siliculosus-1a_F_contig140:55333..555381696318735.4216964-UTR-E-siliculosus-1a_F_contig140:55333..55538Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 55334..55538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927914.332616-CDS-E-siliculosus-1a_F_contig140:49007..493191622927914.332616-CDS-E-siliculosus-1a_F_contig140:49007..49319Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 49008..49319 -
1696318735.3912637-CDS-E-siliculosus-1a_F_contig140:49007..493191696318735.3912637-CDS-E-siliculosus-1a_F_contig140:49007..49319Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 49008..49319 -
1622927914.3456566-CDS-E-siliculosus-1a_F_contig140:49987..502081622927914.3456566-CDS-E-siliculosus-1a_F_contig140:49987..50208Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 49988..50208 -
1696318735.3989596-CDS-E-siliculosus-1a_F_contig140:49987..502081696318735.3989596-CDS-E-siliculosus-1a_F_contig140:49987..50208Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 49988..50208 -
1622927914.3554041-CDS-E-siliculosus-1a_F_contig140:51329..514741622927914.3554041-CDS-E-siliculosus-1a_F_contig140:51329..51474Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 51330..51474 -
1696318735.4064436-CDS-E-siliculosus-1a_F_contig140:51329..514741696318735.4064436-CDS-E-siliculosus-1a_F_contig140:51329..51474Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 51330..51474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig140.2369.1

>prot_E-siliculosus-1a_F_contig140.2369.1 ID=prot_E-siliculosus-1a_F_contig140.2369.1|Name=mRNA_E-siliculosus-1a_F_contig140.2369.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=226bp
MVQYRPETNNEAKLRDVRAAEEIHHVQHQGSLQANRTAQTADTRSATQNI
LTQAANTDMHMSMHHDRIKSTKVEQLEKKRKKLEKDEEKYRGLVNAAWIA
FPVTMVVYVLTCCSCCLPELMKERKRNAQRKINEVDAELLALTNVNVRRN
FAISDSVSATNEDRRYTGTADPHVESVYAAHPPVSTITTTAARAPMSTIT
TTATCPSAPPDYHEYMSGVTQVHVQ*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig140:48281..55538-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig140.2369.1 ID=mRNA_E-siliculosus-1a_F_contig140.2369.1|Name=mRNA_E-siliculosus-1a_F_contig140.2369.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7258bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig140:48281..55538- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCAGCCCTCGCCCCCGACAAAAAACGACAACACAACACAAGCAAGAGCTC
CAAAAACGTACTTCGTAATCCCAGAAGGAGAACGTCGAGGACATCGGACG
AGCGTCAGAGAGTGCGGGGGAGCCCGAACCGATACAGAAATAGAGGGAGT
GAAGGAGAAGGAGGCAGGACCAGAGAGAGAGCGACACAGGTACAAGACAG
ACAAAGTACTGAGTAGCATGTTCAAGGAGAGCTTCAGAAAAATAACATCG
ACACCAACTTTCAACTTCACATTCTTGTTCGTTTCCCTGGCCTGACACCG
ACACCTTTTACAGCCAGTGGGCCTCTCACCTCCAGCGCATGTCTCGTTTG
GTTGGCAGGTACAGACAGTACAGTGTGTCGTTTGTGCGTTGATCATGTGC
GTGCGCGTTTTCCCCACCTCTCCGTGGCCGCTTCAAACGCATGCACGCCC
GTGACACTTTTTTACATTTGGCGACCTCATTGGCACGTGCTTCCATCAAC
CATGGCCTGCTCCCACTTCAAGTGCTATAAGTGTAGATATAAGTGTTTCT
TTTTCCCTTCCTAATCGCCTGTGTTGTGCAGATTCTCCTTCAACATATGC
ATACGTGCCCTTGCGCGAAGGTCTCCCAAGGTGCCTTGTGTCATGACCCG
CCCCGATATCGGGCAACAGCAACGCAAGGGGGAGCGATGGAGATGTATTT
TGTGCATAGCCCACCTTCGCATGCGGCTGAACCGAACTAAAGGGTATCTC
CACCTCTTTCTCCACTGCTTACAGTGGCCTTCACAAGAAATGTACTCGTA
TTTGAGTACCGGATGTTATTTGCAAAGCTCGAATCTGCGCATGGCGGGGG
GGGCGATAGCATTTTTGCGCTCGTTGCAGGATGTCAACGTCTCGGAGCTG
AGGTGCGAAACTATTGCATTGAGGATACGTCCATTCAATTCATCGTTCCG
AACGCTCACAGTTAATTTGTGCGTCTTGCCGACAGAGGTGGCGGCGGATA
GATCTATGCATCTGATGTGATACGGGGAATCTCTAGGAGCATTATATCAT
CAAAAGAAGGTCAAGGGGTGATGAAAGGTGAAAAAAGAAGTATCAGCAGG
CCGCAAACAAGCCCACAGCCGTCAGCGGGGGTTGCTGTATGTGTCAGCCT
AAGATGCGGCGCAAGAGGGCGTAAGGGGTGGGTCACCTGAAAGTGAAAGC
CCATGCCACGGCGCAAGGAAAAATGCTACATGGGTACCAGAGCAGGCTGC
ACCCACCCGCAGGAACATTCCCAGGACATGGAGACCACATGCTCTACTAT
CAGCTTGAGGGCGTTCTAGACCAAACAGAGACCAGGGAACAGGGAACGAA
CTCGGAATTCCCTGTTCCCTGTTTGTCGTTGTGTCCTAAAACATACATTA
CACCGCATTTCCCGGGAACACGGAACATTTCAGCGCGTGTCTCTGGCGCG
CGTGCGTCGGGCAGGTCATCATAGGGAACAAATACGATCATTGGATGCAA
AAAGACGAGTGGGGGGTAGGGGAAGCAGGAGGTGGTGTAGGTTTTGAAGG
AACCTGTTGAGCGCATATCAAGCACATGTGCTACATAGGTATCGGCTGGA
AAAGGTGGTGCTCATTATGCAATGCGCACTTTCGAGAGTGCTCTGGAAGA
CTTGCTTTTTGAGTTGTGGTCGTCGGCAGCTTGCCGTGTCTTCGACACTT
TCGCTTCCCCCATACTGGATGGGGGGGGGGAATGAGCCGCGGGTGACGAC
TCAATACCTTGCAGTAGTCTATCTGCGATGCTGTGCAGGGTGCGAGACGC
GTCGCGTTCCGGTAGCAACGTAGCAGAACGCGCTTCATTACTTACTTTGT
GGAATCCAGTCAAATATTCGAAAAACGCCATGAATGGATGGCGCTGGGCA
CCACAAAGCCTCTTCTTTTTGCCCCTTGGGCACAGCAATTTTATTTCCGG
GTGACCCTCCCTGACGCACGAAAGCAACAGGAACAACAAAGGTATCCGCA
ACGAGCTGTGTCCATACTCCGTCTTGTGTGGAGATTAACACCGACGAGGA
GGCCGTAGTACGCTCAGAAACGCGAGCGTTTGGCACAGCCTGCAACAAAA
CGCCGCGTCTGTCTCTCTCTGCTGGGATCATCAGAGTTCGTTGTTGGTAG
TTTTGTGCCCCAGGCGCGAAGGGTTCGTTTTCCGATGATCCCTCTCCCCA
CACGCCAAAGCAACAGCAGTGGCGATGATATCCGCCACGAGCTATGTATG
TGGCTCCGTTCCCACGCCAATGCGGTCTTCCCCCCCCCCGCCGTGTTGCG
TGTTTAGCTTACGGAGTGCTTCCTCTGTGTCCCCCGGGCTGGAAACCGAG
CAACTATCTCAGAACTATCTGCTGTACAATAGGAGATCTTCGCTTTTGTG
TTCCTTTACCTCTCTCTCTCGTCGAACTCCCGGGGACGTTTCGATGATTT
TTGTAACAAATGCGGGTCAAGCACGACCATCTGTTGTCAGAGCGCGATGG
AACCGGTGTGACGTCGAGTGCCCTAATTAGATTCCTCCTCACAACCCAGC
ACCTCGCAAATCTGTTCTCTATTGACCTCGTTCTCGTCAAATAAATGGGA
CAATATATTGACCTACCATTCCCCGGGGGGCTTTGCGGAAGAGTCGCTCT
ACAGTGCGACGGTTGAAAGAGCCCGATACTTAGAACCGTTTTTTCCCTCC
TGAGGATGAAGGGAAAAAATGTCGCGCTTCGCGCTCCGCGGCTCATTACA
ACCGCTATACACAAGCATTCGCCGCCGTTTTTGCAAGCAATACACTTGAT
CGTGGTGGCAATGCCTGTACGGCTTGAACTGGTAGCATGCAGCACCTGTG
GCAGCCACATGCCCGAAAGTGATCACACACTTCCCACCACGTCCTCAATT
GCCACCGAAGAGCCCGTGTTCCACGTTCCCTATGGTCTATTGGCTATATT
TTAATGTACTTGCTCCTTCATACTTGTGCGGTGTAACTATGTACCTCAAA
CCGGGAACGTGTGTGGCATTTCTTGTTTCCAGGAAAGATATTTTGTGTGG
CTGGCCAATAAGACAATAATTCCGAGTTCCCTGGTCCCTGGTCCCTGTCC
AGAAAAGAGATGTTAAGACACGCCCTGATAGGTCTCTAACCTCAACCGCT
CCATAGCTGACGTGTTTTTCACTCGAAGAGCCTAGCGAACCTCTCAACGA
ACCCCAAAAGAGTAATTTTTCCAGTCAATCTGTATATGATCAGTTTGTAT
AGTCTTGCGAGATCCCCTCCGGAGTGTGTTTTGTTGTGCGCTTGAACACG
GCTTTGGTGTGCACGGAACGCAACATGTTAGAGCACGCAATAATTCGGAT
GTAACTTACAATTGTTAATTCTTGTTACATTGTCACTCCAGTAGTACACA
GAGTAGGAGTGCCGAGAGCGTGAAAGCTGCGTATCCTCCCACACGTCATT
CTTGGGTTGGTTCAGAGAGACTGAGGCAGGCAGCCGTATGAAAAGGGGTG
GCGTGACGATGGCAACATCTATCATCATTGAGAGTCTACGCAATTCTTCC
ATGCCGGTAATTTCCATAGAACCATCATTGTGGGCCGAAGGTTGAGAGCC
ACGGCCATTTCATCCATTCATCCGTTTTCATTTTTTGGGCGGCTTCCCAG
GAATAGTAGTAGGTTGCGGGAGCACATACTGCATGGAGGAAGCAATATCA
GCACAAAGTATCGATGGGAAATGGCTGGGGTGCTACTTCCACTCTAGCAC
TCCCGAAGGTCAACATCATCGTGGGACTGATCGACGATCGTTGATGGTTT
TTGTGTCATGCTGGCACAGGGTGGTTTGGCCGGCTATTCACTCGGCAGAA
TATTGCTGAAGAACCGGATTATCATGACAATATTAATGATGTGATTGCCA
CAGTTCATTTCATTCCATCTTGCCTTCGTATCCCCAGACGGGTTGCTTGG
GTGGCGCTTTGTACCTTACATGTAGCGAGTATCCAAATCCCACCTGACTG
CCATTCCTATTCCAAATGCATCGCAGGTGAAATTCAACCCTTTTGAGTAT
CAAGCCGAGTTATCATGGTGCAGTACAGGCCGGAGACCAACAACGAGGCA
AAGCTCAGAGATGTTCGTGCTGCGGAAGAAATCCACCACGTCCAGCACCA
GGGAAGCCTTCAGGCGAATCGGACGGCCCAGACTGCTGACACCAGAAGTG
CAACGCAGAGTGAGTGTGTACCATCCAAGAAGACTCTACGTATGTACAGT
AGTCAAATCAGACAATCACATCGGGTTAGTTCGCCTCATGTGACGAAGGC
ACCATGCACATAATCCCGAGGGGAAGGCTCGTTTGACGGCGGGCTTCTTG
AAGGTAGTCAGCCATGGGTTCTTGGTTTCGATTCTGCAAGCGTTTTTCCG
CTTGGACGACTATGACTTCATTCGCCATGCCCGTGTGTTCCATTCGATAA
AGTACACATTGTGATCTCGCATCTAAATGTAAATGACATGACCTTCTGAG
GAAAGACCGACTGCATTCATATTGTTGCGCACATCTGCGGGGCGACCAGA
TCGGCCTTTCGCGTCAAATGTCGTAGCCCGCCGATATTCTTTTGAACACG
TACATGCAGCAAGAACGCCACGCTGCGTCTTGTCGTGGTACTCATTTATA
TATTGGGAGTTTGTGTCTGGTTCCTCGCCGAACGTTTGTCCAGATGGAGC
CTGGAAACATCCATGTAACGATCAATTGTGGTTACGCTTTAGGCTTTACA
GGGGGCGTGAAAATGAATGGATCCCACCGCCTACAAGACGTGCAAATGAA
AGCAGTTGAGAGTACAGCCTTTACAGCCGAGCAAGCAACACATCTCGCTA
CCGGATTGAGCCCCGTTTCGTTTGTGGCACCACAGCATCCGAAACCAAAC
TATTGGACTAGTCAGCATGACGGTCCCTCAGGATAAACACTTCAGGTGTA
CTTGTTCCCGAGACCCTGGGTACTCTTTCCGAGAGTATTTGATAAGGGTA
AGGCTCGTCTGAGACCCTGGAAACAATCTACATGATGATGTCTGCGATGA
GAAGATGCGAAAGTTCTTTTGGTGGATAGGAGGGCTGGCGAGGGGAGTTA
CTCTCCTTGGAGTGAGTTCTTTCGGTCATTCGCACCCACGAAAAACGTTG
AAGCCGGAGTAAGACTAGTCCGCCTGACTAGAACCTTGGATTATGTTCGG
CTTCTTCAATACGGCACTATTCCAACATCCATGGTTATTATTGTGATGGT
TCAATTTCACTGCAAAACGCAAAGTTTCTGATTCAACGCGAAGGCTAACC
AACCCAACTCTCCGAAAAAATGCACCCCAGACATCCTTACCCAGGCGGCC
AACACGGACATGCACATGTCCATGCACCATGACCGCATCAAGAGCACCAA
GGTCGAGCAGCTGGAGAAGAAGAGGAAGAAGCTGGAAAAGGATGAAGAGA
AGTACCGGGGGCTCGTGAATGCGGCATGGATAGCGTTCCCAGTGACGATG
GTTGTGTACGTCTTGACCTGCTGCTCGTGCTGCCTTCCCGAGCTCATGAA
GGTGTGAACGCGGGGGTGGTTCTTGCTTGTTTCATGGACCACAGGCAGGG
TATGGGTTCACTTGCACTTATGTTGGGTTTAACGTTGTTCGTGTTGACGT
TCTCATACTCGAAAATCCCATTGCGCGCAAAAGTCCTCTTCTGGTGTGGC
TCAAGCCTTGATGTACACCCGGCACCAGCTGATGCTTTTCGATCGCTGTG
CTCGTTCCTCGAATGCTTTCGATTTTCATCGGGATATCGGCGAAATAATG
AAATTTCCGTTCCCACTGTCACTCTTGCCATTTCCAGATGGCACCAACTC
TTTCCGTTCAGTCTATCGCAGTCATCAGTGCTTCTGCTTGAACGGCCCCT
GACCTCCTGCAAAGCGATACATATGAGTACATTGTTTTCGTGTGCTGCCA
AAGAGCGCATGCCAAAAATAGTGAAACAGTATGCTGCCCGGGGCTTTGTA
CCATAGATCAGTGCTGCTATGCACCCGCTGGTCGCATGAAATCTTGCCTC
CAAAGCCATCAATTTTTTGAGAGTTGTAAGTACCATCGGGGAAAGAGCGT
CATTCTCGCGAATTCAATATGTAGCTCGCACGCGATCCGGCTCGTTTCTG
TATGAATATTTCACTCTCTCTGGTATTTTGGTTGTTTGTGCCAACGCCTT
TTGCTCGCCCTTTTGGCAGGAGAGGAAGAGGAACGCCCAGCGAAAGATCA
ACGAGGTGGACGCGGAGCTCCTGGCCCTCACCAACGTCAACGTCCGCAGA
AACTTCGCAATCTCCGACTCGGTCAGCGCTACGAACGAAGACCGTCGTTA
CACCGGGACAGCTGACCCCCACGTGGAATCGGTGTACGCCGCGCACCCCC
CGGTGTCGACGATCACTACCACCGCCGCGCGCGCCCCGATGTCAACGATC
ACTACCACCGCTACGTGTCCGTCTGCCCCGCCGGACTATCACGAGTATAT
GAGTGGTGTCACTCAGGTTCACGTCCAGTAAATACACGAGTGCACGGCGC
CTCCTTTGCTCCATGCTTCGTTCGGTCAAGGAGAGTTATGTTGTGTCGAC
GTCATCCTGTGCGTATCTAGCGCAGGTAGGGGCCGAAGGGAGCGTTCGCC
TCTTCTGCGCCCCAATACATCGAAACAACCATCAATGGTTGGACCTTACG
CATTCGAACAGAGATTAGCTGGCTGGACTTGGGCTGCCGCTTGTGTCATG
ACTCCCACGTCTAGTACGTACCCTGCGTAGATCTCTGCAGTACATTCAAT
GGCGCGTGGTACAGGGTATGTTTCCACGGTCTTTGCGTATATAGTCTATA
TGCCCATCCGCGTAGTCAGGTGAACAACACGCGCACCGCTCATTCATACT
TCAGCACACTTGGCTTGATTGTTGACGATATTGGTTTGCCGCCCACTCAA
GCCGTAGCTTGGCTCAAGCTTCCAACGAGATCATACTGCGACGTTTCCAG
CTGAGACTGCCAAATTTGTGGGGCCCTCGGTCGTAAGGACGATGGAGTCG
TTTGGCGTTCCAAGGATATAGAGGAGATTAGCTTGGACTGGACGAACGAA
CGGAGCGTTCAACGAGCGTGCCCCTGTTCCAAGCAAGCGCCATGTACGAA
AATTCAAGAACTTATTGCGGGCTTCAGTCGTTTGGAAGGCAGCAACAACA
AACGGACCCGTACATGGTAGAAATTAGGTGCAAGTCCACTACCTGTCGAA
TTCCTCCC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig140:48281..55538-

>mRNA_E-siliculosus-1a_F_contig140.2369.1 ID=mRNA_E-siliculosus-1a_F_contig140.2369.1|Name=mRNA_E-siliculosus-1a_F_contig140.2369.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1356bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig140:48281..55538- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGCAGTACAGGCCGGAGACCAACAACGAGGCAAAGCTCAGAGATGT
TCGTGCTGCGGAAGAAATCCACCACGTCCAGCACCAGGGAAGCCTTCAGG
CGAATCGGACGGCCCAGACTGCTGACACCAGAAGTGCAACGCAGAATGGT
GCAGTACAGGCCGGAGACCAACAACGAGGCAAAGCTCAGAGATGTTCGTG
CTGCGGAAGAAATCCACCACGTCCAGCACCAGGGAAGCCTTCAGGCGAAT
CGGACGGCCCAGACTGCTGACACCAGAAGTGCAACGCAGAACATCCTTAC
CCAGGCGGCCAACACGGACATGCACATGTCCATGCACCATGACCGCATCA
AGAGCACCAAGGTCGAGCAGCTGGAGAAGAAGAGGAAGAAGCTGGAAAAG
GATGAAGAGAAGTACCGGGGGCTCGTGAATGCGGCATGGATAGCGTTCCC
AGTGACGATGGTTGTGTACGTCTTGACCTGCTGCTCGTGCTGCCTTCCCG
AGCTCATGAAGACATCCTTACCCAGGCGGCCAACACGGACATGCACATGT
CCATGCACCATGACCGCATCAAGAGCACCAAGGTCGAGCAGCTGGAGAAG
AAGAGGAAGAAGCTGGAAAAGGATGAAGAGAAGTACCGGGGGCTCGTGAA
TGCGGCATGGATAGCGTTCCCAGTGACGATGGTTGTGTACGTCTTGACCT
GCTGCTCGTGCTGCCTTCCCGAGCTCATGAAGGAGAGGAAGAGGAACGCC
CAGCGAAAGATCAACGAGGTGGACGCGGAGCTCCTGGCCCTCACCAACGT
CAACGTCCGCAGAAACTTCGCAATCTCCGACTCGGTCAGCGCTACGAACG
AAGACCGTCGTTACACCGGGACAGCTGACCCCCACGTGGAATCGGTGTAC
GCCGCGCACCCCCCGGTGTCGACGATCACTACCACCGCCGCGCGCGCCCC
GATGTCAACGATCACTACCACCGCTACGTGTCCGTCTGCCCCGCCGGACT
ATCACGAGTATATGAGTGGTGTCACTCAGGTTCACGTCCAGTAAGAGAGG
AAGAGGAACGCCCAGCGAAAGATCAACGAGGTGGACGCGGAGCTCCTGGC
CCTCACCAACGTCAACGTCCGCAGAAACTTCGCAATCTCCGACTCGGTCA
GCGCTACGAACGAAGACCGTCGTTACACCGGGACAGCTGACCCCCACGTG
GAATCGGTGTACGCCGCGCACCCCCCGGTGTCGACGATCACTACCACCGC
CGCGCGCGCCCCGATGTCAACGATCACTACCACCGCTACGTGTCCGTCTG
CCCCGCCGGACTATCACGAGTATATGAGTGGTGTCACTCAGGTTCACGTC
CAGTAA
back to top