mRNA_E-siliculosus-1a_F_contig13970.2346.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13970.2346.1
Unique NamemRNA_E-siliculosus-1a_F_contig13970.2346.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13970.2346.1 vs. uniprot
Match: D7FWW8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW8_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 6.590e-98
Identity = 179/284 (63.03%), Postives = 201/284 (70.77%), Query Frame = 1 
Query:    1 NDVNLSFDSATTVVDEGDIYSGDGHLRGLFDASSDDMVEDLTGSSS--DARPGPVPSAVCDLASNRGKEASLNGPSRSSASSSSSTTAGDADFGGG-NCHYPMYSSARFSSNNTDASGRYQGTAAPFTPQPMGSMGHVSAGCNDGGGTRNGPPTDFGPGASIQPWVSLADYHAMCSAQWPSHQVLGAQGQHSGQTGANASYGPGASSFHPSVGASSFDSLPAGLTPYGTAQSAPGGPPAAPLSSASSFGIAPAIAHSAGGANAFAASAGVAAVAPFAGPAITVP 843
            N VN SFDS+TTVVDEGDIY+GDGHLRGLFD SSD MVEDLTGSS   +A P  VP+ VCDLA+  G+   L GP RS+ASS+              N H P YS+AR + NN +  G Y+GT APFTPQPMGSMGH++ G N   G  N PPT+FGPGA  QPWVSLADYHA+CSAQWP HQ+ GA GQH GQ GAN  YGPG S+F PSVG SS D+LP+ L PYG  Q APGG PA    S+S  G+ PAI  SAG AN  AASAGVAAVAP AGPAI VP
Sbjct:   25 NGVNDSFDSSTTVVDEGDIYTGDGHLRGLFDGSSDGMVEDLTGSSEAPEATPWTVPTGVCDLATESGQGDFLTGPWRSNASSTXXXXXXXXXXXXXXNGHNPTYSAARRTGNNHELHGHYRGTGAPFTPQPMGSMGHMAVGYNGAAGIINQPPTEFGPGACSQPWVSLADYHAICSAQWPHHQLGGAHGQHRGQLGANTPYGPGVSTFLPSVGGSSLDTLPSALAPYGMVQGAPGGAPATAHGSSSYLGVGPAIPLSAG-ANKVAASAGVAAVAPLAGPAIAVP 307
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13970.2346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWW8_ECTSI6.590e-9863.03Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13970contigE-siliculosus-1a_F_contig13970:8..937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size930
Model size930
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927909.5155437-CDS-E-siliculosus-1a_F_contig13970:7..9371622927909.5155437-CDS-E-siliculosus-1a_F_contig13970:7..937Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13970 8..937 +
1696318733.0862272-CDS-E-siliculosus-1a_F_contig13970:7..9371696318733.0862272-CDS-E-siliculosus-1a_F_contig13970:7..937Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13970 8..937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13970.2346.1prot_E-siliculosus-1a_F_contig13970.2346.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13970 8..937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13970.2346.1

>prot_E-siliculosus-1a_F_contig13970.2346.1 ID=prot_E-siliculosus-1a_F_contig13970.2346.1|Name=mRNA_E-siliculosus-1a_F_contig13970.2346.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=310bp
NDVNLSFDSATTVVDEGDIYSGDGHLRGLFDASSDDMVEDLTGSSSDARP
GPVPSAVCDLASNRGKEASLNGPSRSSASSSSSTTAGDADFGGGNCHYPM
YSSARFSSNNTDASGRYQGTAAPFTPQPMGSMGHVSAGCNDGGGTRNGPP
TDFGPGASIQPWVSLADYHAMCSAQWPSHQVLGAQGQHSGQTGANASYGP
GASSFHPSVGASSFDSLPAGLTPYGTAQSAPGGPPAAPLSSASSFGIAPA
IAHSAGGANAFAASAGVAAVAPFAGPAITVPSPAVAPPAAPAVAPPPAPA
VPPPPAAALA
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mRNA from alignment at E-siliculosus-1a_F_contig13970:8..937+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13970.2346.1 ID=mRNA_E-siliculosus-1a_F_contig13970.2346.1|Name=mRNA_E-siliculosus-1a_F_contig13970.2346.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=930bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13970:8..937+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AACGACGTCAACTTGTCATTCGATTCAGCGACGACAGTCGTCGACGAGGG
CGACATTTACTCGGGCGACGGCCACCTCCGAGGTCTGTTCGACGCTAGCT
CAGACGACATGGTGGAAGACTTGACGGGCTCGTCGTCAGATGCTCGACCC
GGCCCTGTGCCGTCCGCGGTATGCGACCTAGCCAGTAACCGTGGAAAAGA
AGCCTCCCTAAACGGCCCTTCGCGTTCATCCGCCAGCAGCAGCAGCAGTA
CCACAGCCGGCGATGCAGACTTCGGCGGCGGCAATTGCCACTACCCCATG
TACTCCTCCGCGAGGTTCAGCAGCAACAACACAGACGCTAGTGGGCGCTA
CCAGGGCACAGCGGCTCCATTCACGCCGCAGCCCATGGGATCCATGGGGC
ACGTGTCCGCTGGATGCAACGACGGTGGCGGTACCAGAAACGGCCCACCT
ACCGACTTCGGCCCGGGTGCCAGCATCCAGCCTTGGGTATCACTCGCGGA
CTACCACGCTATGTGTTCGGCCCAGTGGCCTAGCCATCAGGTGCTCGGAG
CCCAAGGACAGCACAGTGGGCAGACAGGAGCCAACGCGTCTTACGGGCCC
GGTGCATCGTCCTTCCATCCTTCCGTTGGGGCGTCTTCATTTGACTCCCT
CCCAGCCGGTTTAACACCGTACGGAACGGCCCAGTCCGCGCCTGGCGGGC
CTCCTGCAGCACCGCTTTCGTCGGCTTCCTCCTTCGGGATTGCCCCGGCG
ATTGCACACTCTGCTGGTGGTGCAAACGCTTTTGCTGCGTCTGCCGGGGT
CGCAGCGGTTGCGCCTTTTGCTGGTCCGGCGATTACTGTCCCTTCTCCTG
CGGTCGCACCCCCTGCTGCGCCGGCGGTTGCGCCCCCTCCTGCCCCCGCG
GTTCCGCCCCCTCCTGCCGCAGCGCTGGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13970:8..937+

>mRNA_E-siliculosus-1a_F_contig13970.2346.1 ID=mRNA_E-siliculosus-1a_F_contig13970.2346.1|Name=mRNA_E-siliculosus-1a_F_contig13970.2346.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1860bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13970:8..937+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AACGACGTCAACTTGTCATTCGATTCAGCGACGACAGTCGTCGACGAGGG
CGACATTTACTCGGGCGACGGCCACCTCCGAGGTCTGTTCGACGCTAGCT
CAGACGACATGGTGGAAGACTTGACGGGCTCGTCGTCAGATGCTCGACCC
GGCCCTGTGCCGTCCGCGGTATGCGACCTAGCCAGTAACCGTGGAAAAGA
AGCCTCCCTAAACGGCCCTTCGCGTTCATCCGCCAGCAGCAGCAGCAGTA
CCACAGCCGGCGATGCAGACTTCGGCGGCGGCAATTGCCACTACCCCATG
TACTCCTCCGCGAGGTTCAGCAGCAACAACACAGACGCTAGTGGGCGCTA
CCAGGGCACAGCGGCTCCATTCACGCCGCAGCCCATGGGATCCATGGGGC
ACGTGTCCGCTGGATGCAACGACGGTGGCGGTACCAGAAACGGCCCACCT
ACCGACTTCGGCCCGGGTGCCAGCATCCAGCCTTGGGTATCACTCGCGGA
CTACCACGCTATGTGTTCGGCCCAGTGGCCTAGCCATCAGGTGCTCGGAG
CCCAAGGACAGCACAGTGGGCAGACAGGAGCCAACGCGTCTTACGGGCCC
GGTGCATCGTCCTTCCATCCTTCCGTTGGGGCGTCTTCATTTGACTCCCT
CCCAGCCGGTTTAACACCGTACGGAACGGCCCAGTCCGCGCCTGGCGGGC
CTCCTGCAGCACCGCTTTCGTCGGCTTCCTCCTTCGGGATTGCCCCGGCG
ATTGCACACTCTGCTGGTGGTGCAAACGCTTTTGCTGCGTCTGCCGGGGT
CGCAGCGGTTGCGCCTTTTGCTGGTCCGGCGATTACTGTCCCTTCTCCTG
CGGTCGCACCCCCTGCTGCGCCGGCGGTTGCGCCCCCTCCTGCCCCCGCG
GTTCCGCCCCCTCCTGCCGCAGCGCTGGCGAACGACGTCAACTTGTCATT
CGATTCAGCGACGACAGTCGTCGACGAGGGCGACATTTACTCGGGCGACG
GCCACCTCCGAGGTCTGTTCGACGCTAGCTCAGACGACATGGTGGAAGAC
TTGACGGGCTCGTCGTCAGATGCTCGACCCGGCCCTGTGCCGTCCGCGGT
ATGCGACCTAGCCAGTAACCGTGGAAAAGAAGCCTCCCTAAACGGCCCTT
CGCGTTCATCCGCCAGCAGCAGCAGCAGTACCACAGCCGGCGATGCAGAC
TTCGGCGGCGGCAATTGCCACTACCCCATGTACTCCTCCGCGAGGTTCAG
CAGCAACAACACAGACGCTAGTGGGCGCTACCAGGGCACAGCGGCTCCAT
TCACGCCGCAGCCCATGGGATCCATGGGGCACGTGTCCGCTGGATGCAAC
GACGGTGGCGGTACCAGAAACGGCCCACCTACCGACTTCGGCCCGGGTGC
CAGCATCCAGCCTTGGGTATCACTCGCGGACTACCACGCTATGTGTTCGG
CCCAGTGGCCTAGCCATCAGGTGCTCGGAGCCCAAGGACAGCACAGTGGG
CAGACAGGAGCCAACGCGTCTTACGGGCCCGGTGCATCGTCCTTCCATCC
TTCCGTTGGGGCGTCTTCATTTGACTCCCTCCCAGCCGGTTTAACACCGT
ACGGAACGGCCCAGTCCGCGCCTGGCGGGCCTCCTGCAGCACCGCTTTCG
TCGGCTTCCTCCTTCGGGATTGCCCCGGCGATTGCACACTCTGCTGGTGG
TGCAAACGCTTTTGCTGCGTCTGCCGGGGTCGCAGCGGTTGCGCCTTTTG
CTGGTCCGGCGATTACTGTCCCTTCTCCTGCGGTCGCACCCCCTGCTGCG
CCGGCGGTTGCGCCCCCTCCTGCCCCCGCGGTTCCGCCCCCTCCTGCCGC
AGCGCTGGCG
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