mRNA_E-siliculosus-1a_F_contig139.2307.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig139.2307.1
Unique Name	mRNA_E-siliculosus-1a_F_contig139.2307.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig139.2307.1 vs. uniprot
Match: D8LPY7_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY7_ECTSI)

HSP 1 Score: 945 bits (2443), Expect = 0.000e+0
Identity = 550/591 (93.06%), Postives = 562/591 (95.09%), Query Frame = 1

Query:    1 AQVARAHSQLSQYEAKYGTRLKGSNAFYVGNILRLLRAVLKFLTKGREKLQAARAENIKTTAAASVSKGNTGVQGPRGVGAAAAAAGGEAEEAGVRSEMLEINDFLFRAGLDNVNIFKLQRYMRRSEISRKVMGFMDLSAASSPEVTLRKNTSLSRNGNDGNTDDNGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AGVFVSKHVSALQTVEAFLDALTNASRDGRVLATFGGKEGDGRSSSRGSVGGXXXXXXXXGQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSSVEPSRVEVFSCGHVIPRENLLPLCVSKGPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWKASGTLRQLNKLKSVFSEPRSAKDVDVVLREFSIAARAGAWKPTTSXXXXXXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVGLPYPDKRDAELKQKMAYLDEASPSSIGRAGREYYSSICMRAVNQSIGRSIRHAGDYASILLVDERYKDDQVVRLLPGWIAERVVKAANFGQCFVALRRFFAEMHAR 1770
            ++VARAHSQLSQYEAKYGTRLKGSNAFYVGNILRLLRAVLKFLTKG+EKLQAARAEN KTTAA     GN+GVQGPR    AAAAA GEAEEAGVRSEMLEINDFLFRAGLDN+N+FKLQRYMRRSEISRKVMGFMDLSAASSPEVTLRKN SLS+NG  GNTDD+GC      XXXXXXXXXXXXXXXXXXXXXXXXXXX AGVFVSKH+SALQTVEAFLDALTNASRDGRVLATFGGKEGDGRSSSRGSVGGXXX     GQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSSVEPSRVEVFSCGHVIPRENLLPLCVSKGPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWKASGTLRQL+KLKSVFSEPRSAKDVD VLREFS+AARAGAWKPTTSXXXXXXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVGLPYPDKRDAELKQKMAYLDEASPSS GRAGREYYSSICMRAVNQSIGRSIRHAGDYASILLVDERYKDDQVVRLLPGWIAERVVK ANFGQCFV+LRRFFAEMHAR
Sbjct:  492 SEVARAHSQLSQYEAKYGTRLKGSNAFYVGNILRLLRAVLKFLTKGKEKLQAARAENAKTTAAXXXXXGNSGVQGPR----AAAAACGEAEEAGVRSEMLEINDFLFRAGLDNMNLFKLQRYMRRSEISRKVMGFMDLSAASSPEVTLRKNASLSQNG--GNTDDSGCGCSKATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVFVSKHISALQTVEAFLDALTNASRDGRVLATFGGKEGDGRSSSRGSVGGXXXRGATAGQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSSVEPSRVEVFSCGHVIPRENLLPLCVSKGPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWKASGTLRQLSKLKSVFSEPRSAKDVDAVLREFSLAARAGAWKPTTSXXXXXXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVGLPYPDKRDAELKQKMAYLDEASPSSRGRAGREYYSSICMRAVNQSIGRSIRHAGDYASILLVDERYKDDQVVRLLPGWIAERVVKPANFGQCFVSLRRFFAEMHAR 1076

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig139.2307.1 vs. uniprot
Match: A0A835YWY4_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY4_9STRA)

HSP 1 Score: 453 bits (1165), Expect = 3.520e-142
Identity = 281/620 (45.32%), Postives = 349/620 (56.29%), Query Frame = 1

Query:    4 QVARAHSQLSQYEAKYGTRLKGSNAFYVGNILRLLRAVLKFLTKGREKLQAARAENIKTTAAASVSKGNTGVQGPRGVGAAAAAAGGEAEEAGVRSEMLEINDFLFRAGLDNVNIFKLQRYMRRSEISRKVMGFMDLSAASSPEVTLRKNTSLSRNGNDGNTDDNGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVFVSKHVSALQTVEAFLDALTNASRDGRVLATFGGKEGDGRSSSRGSVGGXXXXXXXXGQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSSVEPSR--------------------------------VEVFSCGHVIPRENLLPLCVSKGPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWKASGTLRQLNKLKSVFSEPRSAKDVDVVLREFSIAARAGAWKPTTSXXXXXXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVGLPYPDKRDAELKQKMAYLDEASPSSIGRAGREYYSSICMRAVNQSIGRSIRHAGDYASILLVDERYKDDQVVRLLPGWIAERVVKAANFGQCFVALRRFFAEMHA 1767
            ++ RAH QL+QY A+Y  RLKG N FYV  ILR+L+++++FL KG  +                                               +++L INDF FRAG+DNVN+FK++RYMRRS I RK+MGF+DL+  ++                D   +                                     A  +VS+HVS+LQT   FL ALTNA +DGRV+          R  S G                  D + PS+KF+MLNPAVHF EI ++ARA+VL+GGTMQP G + +QLF  + P R                                +EVFSCGHVIP EN+LPLCVS+GPSG  FNFTF +RG+ EQ+DEL RL++NVC LVPGGVVCFL S+GY++QVLQ WKASG L QL+K K++FSEPR+A +V+ +L  +S A    +          XXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVG+P+PD RD EL+QK+ Y D A P+  GRAGR  Y ++CMRAVNQSIGR IRHA DY ++LLVDERY     V  LP WIA R   A  FG    AL  FF    A
Sbjct:  432 ELRRAHFQLAQYLARYAARLKGKNVFYVNTILRMLQSLIRFLEKGATQDPXXXXXXXXXXX--------------------------XXXXXXXXAQVLRINDFAFRAGIDNVNLFKVERYMRRSGICRKIMGFLDLTQTAAAAXXXXXXXXXXXTA-DRYAEGAAGGAAESSAQADAVPAQVRHCRSSAHAGEDVEVSAAVAYVSRHVSSLQTAHQFLMALTNADKDGRVIVRRPAPPPLSRDRSAGPPAPPTA--------ADADNDGPSLKFIMLNPAVHFAEIAREARAVVLIGGTMQPAGAIAQQLFPGIAPRRAAXXXXXXXXXXXXXXXXQXASSESEGAAAGGLEVFSCGHVIPPENILPLCVSRGPSGGVFNFTFAKRGSPEQMDELCRLLSNVCALVPGGVVCFLPSFGYMEQVLQCWKASGALHQLSKRKAIFSEPRAATEVESILAAYSAAIHRSS---------GXXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVGMPFPDARDPELRQKIEYADAADPAGGGRAGRALYQAMCMRAVNQSIGRCIRHARDYGAVLLVDERYARAATVAQLPSWIAARAAAAPAFGDAARALGAFFRARRA 1007

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig139.2307.1 vs. uniprot
Match: A0A7S2RUD0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUD0_9STRA)

HSP 1 Score: 391 bits (1005), Expect = 2.600e-124
Identity = 251/597 (42.04%), Postives = 324/597 (54.27%), Query Frame = 1

Query:    7 VARAHSQLSQYEAKYGTRLKGSNAFYVGNILRLLRAVLKFLTKGREKLQAARAENIKTTAAASVSKGN-TGVQGPRGVGAAAAAAGGEAEEAGVRS----EMLEINDFLFRAGLDNVNIFKLQRYMRRSEISRKVMGFMDLSAASSPEVTLRKNTSLSRNGNDGNTDDNGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVFVSKHVSALQTVEAFLDALTNASRDGRVLATFGGKEGDGRSSSRGSVGGXXXXXXXXGQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSSVEPSRVEVFSCGHVIPRENLLPLCVSKGPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWKASGTLRQLNKLKSVFSEPRSAKDVDVVLREFSIAARAGAWKPTTSXXXXXXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVGLPYPDKRDAELKQKMAYLDE-------ASPSSIGRAGREYYSSICMRAVNQSIGRSIRHAGDYASILLVDERYKD-DQVVRLLPGWIAERVVKAANFGQCFVALRRFFAE 1758
            +  AH  L+ Y  KY +RL   N  YVG +L++L+A+L+FLT+            +K  +A  V++G+ T         +A  AAG  A + G R      +  INDF+F AG+DNVN+ KL RY+  SE+ RK++GF+ L  AS     L         G+ G++ +                XXX                 +      HVS L T++ FL +LT+A  DGRV+                                  D++    KF++LNPAVHF ++V +A A+VLVGGTMQP   +++ LF SV  SR+  F+CGHVI  EN+ PL V++GP+   F+F F  R T EQLDELGRL+ NVC + P GVVCFL SY Y  + +  W   GTLR+L + K VF EPRS+ DVD VL  +S A  A    P                 L  VVGAKMSEGINFSDDLARCVVMVGLPYPD+ D EL+QKMA+LD        A+ S    AG EYY ++CMRAVNQSIGR+IRH  DYA+ILLVD RY   D V R LPGWIA  +  AA+FG     L  FF +
Sbjct:    1 IRTAHDALTHYLRKYRSRLSQDNVRYVGQVLQVLKALLRFLTR------------LKAPSAEGVARGHHTEALHASSRASARPAAGRVAGQRGTREMEDKSIYTINDFVFEAGIDNVNLIKLDRYLNVSELPRKLLGFLHLDEASGATQGL---------GSPGDSSE------------VPGGXXXQEHASGAAISSSVGSTASPPTPRSHVSPLSTIQRFLGSLTHADADGRVVLW-----------------------------RDADDDAWHAKFIVLNPAVHFQQVVDEAHAVVLVGGTMQPFEHVIQNLFPSVPQSRLHTFTCGHVIAPENIRPLAVARGPTNVRFDFRFQSRATPEQLDELGRLLVNVCTVTPAGVVCFLPSYDYERKAVDHWTLQGTLRRLKERKRVFREPRSSADVDAVLASYSQAI-ANCENPRPGSAVTGAL-------LFCVVGAKMSEGINFSDDLARCVVMVGLPYPDRSDPELQQKMAFLDSRPRGASGAAASPAQSAGSEYYENLCMRAVNQSIGRAIRHINDYAAILLVDHRYASRDAVARKLPGWIAGELRNAASFGAVVAGLSEFFRD 527

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig139.2307.1 vs. uniprot
Match: A0A4D9CWW8_9STRA (Helicase ATP-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWW8_9STRA)

HSP 1 Score: 385 bits (989), Expect = 3.560e-117
Identity = 243/608 (39.97%), Postives = 333/608 (54.77%), Query Frame = 1

Query:    7 VARAHSQLSQYEAKYGTRLKGSNAFYVGNILRLLRAVLKFLTKGREKLQAARAENIKTTAAASVSKGNTGVQGPRGVGAAAAAAGGEAEEAGVRSEMLEINDFLFRAGLDNVNIFKLQRYMRRSEISRKVMGFMDLSAASSPEVTLRKNTSLSRNGNDGNTDDNGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVFVSKHVSALQTVEAFLDALTNASRDGRVLATFGGKEGDGRSSSRGSVGGXXXXXXXXGQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSSVEPSRVEVFSCGHVIPRENLLPLCVSKGPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWKASGTLRQLNKLKSVFSEPRSAKDVDVVLREFSIAARAGAWKPTTSXXXXXXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVGLPYPDKRDAELKQKMAYLDEAS-------------PS------SIGRA-GREYYSSICMRAVNQSIGRSIRHAGDYASILLVDERY-KDDQVVRLLPGWIAERVVK---AANFGQCFVALRRFFAE 1758
            ++RA +Q++ Y  +Y +RL G N  YV  I+RLL  ++KF+ +       A    + TT+A       TG                  +E    + ++ +N+ +F AG+DNVN+FK+ RYM +S+IS+KV+GF+D           R+ T +  +G++                                          G +VS H+S+LQ V+ FL ALT  SRDGR++   G                        G +  + +    +KF+MLN AVHF EIV +AR++VLVGGTMQP   +V QLF  +  SR++VFSCGHVIP +NLL LC+SKGP+G  F+FT   RG  +Q+DELGRL+ NV  + PGG+V FL SY Y ++++ RW+ S  L +L   KS+FSEP+ AKDV+  L+ +S A   G                     L  VVGAKMSEGINF+D +AR VVMVGLPYPD+RD EL+QKM YLD                PS      +IG   G+ YY ++CMRAVNQSIGR+IRHA D+A+I+LVD RY  D  +V LLP WIA+R+V    + NFG+ FV L RFF +
Sbjct:  415 MSRALNQMTLYWERYKSRLSGKNTVYVQQIIRLLGGLVKFVRRK------ASPHVLATTSA-------TG------------------QEDTSATVIMTVNELVFEAGMDNVNLFKVVRYMEQSQISKKVLGFVD-----------RRGTEVQIHGSEST-----------------FPATCSPSQATDTGVLGESSAGLGNYVSNHISSLQNVQTFLVALTGCSRDGRIVLETG-----------------------HGPQKGRRQMAAGIKFIMLNAAVHFREIVSEARSVVLVGGTMQPVAPIVAQLFPDLPISRLDVFSCGHVIPPQNLLALCMSKGPTGIDFDFTHKSRGLVQQMDELGRLLLNVSTVTPGGLVVFLPSYAYEEKLMTRWRESNLLSKLRSKKSIFSEPKQAKDVEATLQAYSAAIAEGE----IHRKEECSGSGSVGAILFCVVGAKMSEGINFADGMARGVVMVGLPYPDRRDPELQQKMQYLDSLQFFKGAAAANDNTMPSKREKCIAIGATCGKTYYQNLCMRAVNQSIGRAIRHANDWAAIILVDRRYFADPSIVPLLPKWIADRIVPYNHSQNFGRAFVQLSRFFKD 936

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig139.2307.1 vs. uniprot
Match: UPI0011EA2ED1 (ATP-dependent DNA helicase DDX11 isoform X2 n=1 Tax=Archocentrus centrarchus TaxID=63155 RepID=UPI0011EA2ED1)

HSP 1 Score: 367 bits (942), Expect = 8.180e-111
Identity = 228/591 (38.58%), Postives = 313/591 (52.96%), Query Frame = 1

Query:    1 AQVARAHSQLSQYEAKYGTRLKGSNAFYVGNILRLLRAVLKFLTKGREKLQAARAENIKTTAAASVSKGNTGVQGPRGVGAAAAAAGGEAEEAGVRSEMLEINDFLFRAGLDNVNIFKLQRYMRRSEISRKVMGFMDLSAASSPEVTLRKNTSLSRNGNDGNTDDNGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVFVSKHVSA--LQTVEAFLDALTNASRDGRVLATFGGKEGDGRSSSRGSVGGXXXXXXXXGQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSS--VEPSRVEVFSCGHVIPRENLLPLCVSKGPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWKASGTLRQLNKLKSVFSEPRSAKDVDVVLREFSIAARAGAWKPTTSXXXXXXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVGLPYPDKRDAELKQKMAYLDEASPSSIGRA-GREYYSSICMRAVNQSIGRSIRHAGDYASILLVDERYKDDQVVRLLPGWIAERVVKAANFGQCFVALRRFFAE 1758
            AQ+ RAHSQLSQY  +Y +RLK  N  Y+  IL ++  +++ L                         G  G Q P+           +  ++G  +EML IN+FLF+A +DN+N+FKLQRY  +S ISRK+ GF +  A S   VTL    S+++                                               V   K +SA  +  VE F  ALTN++ DGRV+              +G +                   E SVKFL+LNPAVHF +++++ RA+++ GGTMQP  D  ++L  S  V   R+  FSCGH+IP EN+LPL +  GPSG+  +FTF  R +   +DE GR+++N+C +VPGGVVCF  SY Y  +++  W+ASGTL +L   K +F EP+ A  V+ VL+EFS   +  +                    L SVVG KMSEGINFSDDL RCVVMVG+PYP+ +  EL++KM+YLD+  P S GR+ G+    ++CM+AVNQSIGR+IRH GDY+SI+L D RY     +  LP WI +R      FG  F ALR+FF E
Sbjct:  392 AQLCRAHSQLSQYADRYKSRLKAKNLMYIKQILFVIEGLVRVLG------------------------GKVG-QSPQ----------SQTTQSG--TEMLTINNFLFKAQIDNINLFKLQRYFEKSLISRKLAGFAEKYAGSG--VTLHTQNSVNKENR-------------------RTEGLNRYLQTLQSNQRPALDHQESVEAEKVLSASPMMQVEGFFMALTNSNADGRVVV-----------HKQGCL------------------SESSVKFLLLNPAVHFAQVLKECRAVIIAGGTMQPVSDFKQELLFSAGVGEERITEFSCGHIIPPENILPLVLCSGPSGQELDFTFQNRDSPRMMDETGRILSNICNVVPGGVVCFFPSYEYSRRIISHWEASGTLTRLANKKKIFQEPKKANQVEQVLKEFSRCIQRCS----------VDCSGLTGALLFSVVGGKMSEGINFSDDLGRCVVMVGMPYPNIKSPELQEKMSYLDKHLPHSQGRSPGQALIENLCMKAVNQSIGRAIRHRGDYSSIVLCDRRYSRPATLSKLPTWIKDRTTTYTTFGPAFAALRKFFLE 885

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig139.2307.1 vs. uniprot
Match: UPI0011E9E22B (ATP-dependent DNA helicase DDX11 isoform X1 n=2 Tax=Archocentrus centrarchus TaxID=63155 RepID=UPI0011E9E22B)

HSP 1 Score: 367 bits (942), Expect = 8.360e-111
Identity = 228/591 (38.58%), Postives = 313/591 (52.96%), Query Frame = 1

Query:    1 AQVARAHSQLSQYEAKYGTRLKGSNAFYVGNILRLLRAVLKFLTKGREKLQAARAENIKTTAAASVSKGNTGVQGPRGVGAAAAAAGGEAEEAGVRSEMLEINDFLFRAGLDNVNIFKLQRYMRRSEISRKVMGFMDLSAASSPEVTLRKNTSLSRNGNDGNTDDNGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVFVSKHVSA--LQTVEAFLDALTNASRDGRVLATFGGKEGDGRSSSRGSVGGXXXXXXXXGQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSS--VEPSRVEVFSCGHVIPRENLLPLCVSKGPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWKASGTLRQLNKLKSVFSEPRSAKDVDVVLREFSIAARAGAWKPTTSXXXXXXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVGLPYPDKRDAELKQKMAYLDEASPSSIGRA-GREYYSSICMRAVNQSIGRSIRHAGDYASILLVDERYKDDQVVRLLPGWIAERVVKAANFGQCFVALRRFFAE 1758
            AQ+ RAHSQLSQY  +Y +RLK  N  Y+  IL ++  +++ L                         G  G Q P+           +  ++G  +EML IN+FLF+A +DN+N+FKLQRY  +S ISRK+ GF +  A S   VTL    S+++                                               V   K +SA  +  VE F  ALTN++ DGRV+              +G +                   E SVKFL+LNPAVHF +++++ RA+++ GGTMQP  D  ++L  S  V   R+  FSCGH+IP EN+LPL +  GPSG+  +FTF  R +   +DE GR+++N+C +VPGGVVCF  SY Y  +++  W+ASGTL +L   K +F EP+ A  V+ VL+EFS   +  +                    L SVVG KMSEGINFSDDL RCVVMVG+PYP+ +  EL++KM+YLD+  P S GR+ G+    ++CM+AVNQSIGR+IRH GDY+SI+L D RY     +  LP WI +R      FG  F ALR+FF E
Sbjct:  392 AQLCRAHSQLSQYADRYKSRLKAKNLMYIKQILFVIEGLVRVLG------------------------GKVG-QSPQ----------SQTTQSG--TEMLTINNFLFKAQIDNINLFKLQRYFEKSLISRKLAGFAEKYAGSG--VTLHTQNSVNKENR------------------RTEGLNRYLQTLQSNQRPALADHQESVEAEKVLSASPMMQVEGFFMALTNSNADGRVVV-----------HKQGCL------------------SESSVKFLLLNPAVHFAQVLKECRAVIIAGGTMQPVSDFKQELLFSAGVGEERITEFSCGHIIPPENILPLVLCSGPSGQELDFTFQNRDSPRMMDETGRILSNICNVVPGGVVCFFPSYEYSRRIISHWEASGTLTRLANKKKIFQEPKKANQVEQVLKEFSRCIQRCS----------VDCSGLTGALLFSVVGGKMSEGINFSDDLGRCVVMVGMPYPNIKSPELQEKMSYLDKHLPHSQGRSPGQALIENLCMKAVNQSIGRAIRHRGDYSSIVLCDRRYSRPATLSKLPTWIKDRTTTYTTFGPAFAALRKFFLE 886

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig139.2307.1 vs. uniprot
Match: A0A669E237_ORENI (Helicase ATP-binding domain-containing protein n=3 Tax=Pseudocrenilabrinae TaxID=318546 RepID=A0A669E237_ORENI)

HSP 1 Score: 357 bits (917), Expect = 3.750e-110
Identity = 233/591 (39.42%), Postives = 310/591 (52.45%), Query Frame = 1

Query:    1 AQVARAHSQLSQYEAKYGTRLKGSNAFYVGNILRLLRAVLKFLTKGREKLQAARAENIKTTAAASVSKGNTGVQGPRGVGAAAAAAGGEAEEAGVRSEMLEINDFLFRAGLDNVNIFK-LQRYMRRSEISRKVMGFMDLSAASSPEVTLRKNTSLSRNGNDGNTDDNGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVFVSKHVSA--LQTVEAFLDALTNASRDGRVLATFGGKEGDGRSSSRGSVGGXXXXXXXXGQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSS--VEPSRVEVFSCGHVIPRENLLPLCVSKGPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWKASGTLRQLNKLKSVFSEPRSAKDVDVVLREFS-IAARAGAWKPTTSXXXXXXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVGLPYPDKRDAELKQKMAYLDEASPSSIGRA-GREYYSSICMRAVNQSIGRSIRHAGDYASILLVDERYKDDQVVRLLPGWIAERVVKAANFGQCFVALRRFF 1752
            AQ+ RAHSQL QY  +Y +RLK  N  Y+  IL ++  +++ L                         G  G Q P+           +A + G  +EML IN+FLF+A +DN+N+FK LQRY  +S ISRK+ GF++  A S   VTL   T    N  +  T+                                      G    K +SA  +  VE F  ALTN++ DGRV+              +GS+                   E SVKFL+LNPAVHF +++++ RA+++ GGTMQP  D  ++L  S  V   RV  FSCGHVIP EN+LPL +  GPSG+   FTF  R T   +DE GR+++N+C +VPGGVVCF  SY Y  +++  W+ SGTL +L   K +F EP+ A  V+ VL EFS    R  A                    L SVVG KMSEGINFSDDL RCVVMVG+PYP+ +  EL++KM+YLD   P S GR+ G+    ++CM+AVNQSIGR+IRH GDY+SI+L D RY     +  LP WI +R      FG  F ALR++F
Sbjct:  120 AQLCRAHSQLIQYADRYKSRLKAKNLMYIKQILFVIEGLVRVLG------------------------GKVG-QSPQ----------SQATQPG--TEMLTINNFLFKAQIDNINLFKVLQRYFEKSMISRKLGGFVEKYAGSG--VTLH--THSCNNKENRRTE-----------------------GLNRYLQTLQSNQNPGTEAEKVLSASPMMQVEGFFMALTNSNTDGRVVV-----------HKQGSL------------------SESSVKFLLLNPAVHFAQVLKECRAVIIAGGTMQPVSDFKQELLFSAGVVEERVTEFSCGHVIPPENILPLVLCSGPSGQELEFTFQNRDTPRMMDETGRILSNICNVVPGGVVCFFPSYDYSRRIISHWETSGTLTRLANKKKIFQEPKKANQVEQVLNEFSRCIQRCSA-----------DCSGLTGALLFSVVGGKMSEGINFSDDLGRCVVMVGMPYPNIKSPELQEKMSYLDRHLPHSQGRSPGQALIENLCMKAVNQSIGRAIRHRGDYSSIVLCDRRYSRPATLSKLPTWIKDRTTTHMTFGPAFAALRKYF 606

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig139.2307.1 vs. uniprot
Match: UPI0014488D33 (LOW QUALITY PROTEIN: ATP-dependent DNA helicase DDX11 n=1 Tax=Epinephelus lanceolatus TaxID=310571 RepID=UPI0014488D33)

HSP 1 Score: 365 bits (937), Expect = 4.770e-110
Identity = 226/591 (38.24%), Postives = 313/591 (52.96%), Query Frame = 1

Query:    1 AQVARAHSQLSQYEAKYGTRLKGSNAFYVGNILRLLRAVLKFLTKGREKLQAARAENIKTTAAASVSKGNTGVQGPRGVGAAAAAAGGEAEEAGVRSEMLEINDFLFRAGLDNVNIFKLQRYMRRSEISRKVMGFMDLSAASSPEVTLRKNTSLSRNGNDGNTDDNGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVFVSKHVSA--LQTVEAFLDALTNASRDGRVLATFGGKEGDGRSSSRGSVGGXXXXXXXXGQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSS--VEPSRVEVFSCGHVIPRENLLPLCVSKGPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWKASGTLRQLNKLKSVFSEPRSAKDVDVVLREFSIAARAGAWKPTTSXXXXXXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVGLPYPDKRDAELKQKMAYLDEASPSSIGRA-GREYYSSICMRAVNQSIGRSIRHAGDYASILLVDERYKDDQVVRLLPGWIAERVVKAANFGQCFVALRRFFAE 1758
            AQ+ RAHSQL+QY  +Y +RLK  N  Y+  IL ++  ++K L                         G  G Q P+           +A + G  +EML IN+FLF+A +DN+N+FKLQ+Y  +S ISRK+ GF++  A S   V  + +++      +G                                         G    K +S   +  VE F  ALTN++ DGRV+              +G++                   E SVKFL+LNPAVHF +++++ RA+++ GGTMQP  D  ++L  S  V   R+  FSCGHVIP EN+LPL +  GPSG+  +FTF  R +   +DE GR+++N+C +VPGGVVCF  SY Y  +++  W+ASG L +L   K +F EP+ A  V+ VL EFS   +  A   +                L SVVG KMSEGINFSDDL RCVVMVG+PYP+ +  EL++KM+YLD+  P S GR+ G+    ++CM+AVNQSIGR+IRH GDY+SI+L D RY     +  LP WI +R      FG  F ALR+FF E
Sbjct:  393 AQLCRAHSQLTQYADRYKSRLKAKNLMYIKQILFVIEGLVKALG------------------------GKVG-QNPQ----------SQATQTG--TEMLTINNFLFKAQIDNINLFKLQKYFEKSMISRKLSGFVEKYAGSGVSVHTQSSSNKENRRTEG------------------LNRYLQTLQSNQSTAPVSSADQQGSEAEKALSTSPMMQVEGFFMALTNSNTDGRVVV-----------HRQGTL------------------SESSVKFLLLNPAVHFAQVLKQXRAVIIAGGTMQPVSDFKQELLFSAGVGEERITEFSCGHVIPPENILPLVLCSGPSGQELDFTFQNRDSPRMMDETGRILSNICNVVPGGVVCFFPSYEYSRRIISHWEASGALTRLANKKKIFQEPKKANQVEQVLSEFSRCIQRSAVDSS----------GLTGALLFSVVGGKMSEGINFSDDLGRCVVMVGMPYPNIKSPELQEKMSYLDKHLPHSGGRSPGQALIENLCMKAVNQSIGRAIRHRGDYSSIVLCDRRYSRPATLAKLPTWIKDRTSAHTTFGPAFAALRKFFQE 889

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig139.2307.1 vs. uniprot
Match: A0A2I4ATX3_9TELE (putative ATP-dependent RNA helicase DDX11-like protein 8 isoform X1 n=3 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4ATX3_9TELE)

HSP 1 Score: 365 bits (937), Expect = 6.060e-110
Identity = 230/590 (38.98%), Postives = 309/590 (52.37%), Query Frame = 1

Query:    1 AQVARAHSQLSQYEAKYGTRLKGSNAFYVGNILRLLRAVLKFLTKGREKLQAARAENIKTTAAASVSKGNTGVQGPRGVGAAAAAAGGEAEEAGVRSEMLEINDFLFRAGLDNVNIFKLQRYMRRSEISRKVMGFMDLSAASSPEVTLRKNTSLSRNGNDGNTDDNGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVFVSKHVSALQTVEAFLDALTNASRDGRVLATFGGKEGDGRSSSRGSVGGXXXXXXXXGQKTTQDE-EEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSS--VEPSRVEVFSCGHVIPRENLLPLCVSKGPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWKASGTLRQLNKLKSVFSEPRSAKDVDVVLREFSIAARAGAWKPTTSXXXXXXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVGLPYPDKRDAELKQKMAYLDEASPSSIGRA-GREYYSSICMRAVNQSIGRSIRHAGDYASILLVDERYKDDQVVRLLPGWIAERVVKAANFGQCFVALRRFFAE 1758
            AQ+ RAH QL QY  +Y +RLK  N  Y+  IL ++  +++ L                         G  G Q P+           +  +AG  +EM  IN+FLFRA +DN+N+FKLQ+Y  +S ISRK+ GFM+  A S   VTL  ++S   N                                            A       VS +  VE F  ALTN++ DGRV+                                 QD   E SVKFL+LNPAVHF +++++ RA+++ GGTMQP  D  ++L  S  VE  R+  FSCGHVIP EN+LPL +  GPSG+  +FTF  R +   +DE GR+++N+C +VPGGVVCF  SY Y  +++  W+A G   +L   K +F EP+ A  V+ VL EFS   +  A   +                L+SVVG KMSEGINFSDDL RCVVMVG+PYP+ + AEL++KM+YLD+  P S GR+ G+    ++CM+AVNQSIGR+IRH GDY+SI+L D RY     +  LP WI +R    A FG  F ALR+FF E
Sbjct:  404 AQLCRAHCQLRQYADRYKSRLKAKNVMYIKQILFVVEGLVRVLG------------------------GKVG-QNPQ----------SQTTQAG--TEMHSINNFLFRAQIDNINLFKLQKYFEKSMISRKLGGFMEKYAGSG--VTLHTSSSNKEN--------------RRTEGLNRYLQTLQSSQSSAPVSSIDQQGAAEADKVLAVSPMMQVEGFFMALTNSNTDGRVVVR------------------------------KQDVLSESSVKFLLLNPAVHFAQVLKECRAVIIAGGTMQPVSDFKQELLFSAGVEEERIVEFSCGHVIPPENILPLVLCAGPSGQELDFTFQSRDSPRMMDETGRILSNICNVVPGGVVCFFPSYEYSRRIISHWEAGGVFARLANKKKIFQEPKKASQVEQVLNEFSRCIQKCAVDSS----------GLTGALLISVVGGKMSEGINFSDDLGRCVVMVGMPYPNIKSAELQEKMSYLDKHLPRSQGRSPGQALIENLCMKAVNQSIGRAIRHRGDYSSIILCDRRYSRPATLSKLPTWIKDRTNTHATFGPAFAALRKFFLE 900

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig139.2307.1 vs. uniprot
Match: A0A6P7MU22_BETSP (ATP-dependent DNA helicase DDX11 n=1 Tax=Betta splendens TaxID=158456 RepID=A0A6P7MU22_BETSP)

HSP 1 Score: 364 bits (935), Expect = 9.100e-110
Identity = 228/589 (38.71%), Postives = 310/589 (52.63%), Query Frame = 1

Query:    1 AQVARAHSQLSQYEAKYGTRLKGSNAFYVGNILRLLRAVLKFLTKGREKLQAARAENIKTTAAASVSKGNTGVQGPRGVGAAAAAAGGEAEEAGVRSEMLEINDFLFRAGLDNVNIFKLQRYMRRSEISRKVMGFMDLSAASSPEVTLRKNTSLSRNGNDGNTDDNGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVFVSKHVSA--LQTVEAFLDALTNASRDGRVLATFGGKEGDGRSSSRGSVGGXXXXXXXXGQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSS--VEPSRVEVFSCGHVIPRENLLPLCVSKGPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWKASGTLRQLNKLKSVFSEPRSAKDVDVVLREFSIAARAGAWKPTTSXXXXXXXXXXXXXXLLSVVGAKMSEGINFSDDLARCVVMVGLPYPDKRDAELKQKMAYLDEASPSSIGRA-GREYYSSICMRAVNQSIGRSIRHAGDYASILLVDERYKDDQVVRLLPGWIAERVVKAANFGQCFVALRRFF 1752
            AQ+ RAH QL+QY  +Y +RLK  N  Y+  IL        F+T+G  +                V  G  G Q P            + +     +EML IN+FLF+A +DN+N+FKLQ+Y  +S ISRK+ GF++  A S   +  + N++      +G                                          V   K +SA  +  VE+FL ALTN++ DGRV+                             Q T  D    +VKFL+LNPAVHF +++++ RA+++ GGTMQP  D  ++L  S  V   R+  FSCGHVIP EN+LPL +  GPSG+  +FTF  R +   +DE GR++TNVC +VPGGVVCF  SY Y  +++  W ASG L +L   K +F EP+ A  V+ VL EFS   +  A                    L SVVG KMSEGINFSDDL RCVVMVG+PYP+ +  EL++KM+YLD+  P + GR+ G+    ++CM+AVNQSIGR+IRH GDY+SI+L D RY     +  LP WI +R    A+FG  F ALR+FF
Sbjct:  391 AQLCRAHCQLTQYSDRYRSRLKAKNLMYIKQIL--------FVTEGLVR----------------VLGGKVG-QNP------------QTQTTQTETEMLTINNFLFKAQIDNINLFKLQKYFEKSIISRKLCGFVEKYAGSGVSLHTKSNSNKENRRTEG-----------------LNRYLQALQSNQSAAPVYSSDQQGSVEADKVLSASPMMQVESFLMALTNSNTDGRVVVHR--------------------------QGTLSDS---NVKFLLLNPAVHFAQVLKECRAVIIAGGTMQPVSDFKQELLFSAGVGAERITEFSCGHVIPPENILPLILCSGPSGQELDFTFQNRDSPRMMDETGRVLTNVCNVVPGGVVCFFPSYDYSRKIIAHWGASGALTRLANKKKIFQEPKKASQVEQVLSEFSRCIQRCA----------VDGGGLTGALLFSVVGGKMSEGINFSDDLGRCVVMVGMPYPNIKSPELREKMSYLDKHLPHTGGRSPGQALIENLCMKAVNQSIGRAIRHRGDYSSIVLCDRRYSRPTTLSKLPTWIKDRTSTHASFGPAFAALRKFF 886

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig139.2307.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig139.2307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LPY7_ECTSI	0.000e+0	93.06	Helicase ATP-binding domain-containing protein n=1...	[more]
A0A835YWY4_9STRA	3.520e-142	45.32	Helicase C-terminal domain-containing protein n=1 ...	[more]
A0A7S2RUD0_9STRA	2.600e-124	42.04	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A4D9CWW8_9STRA	3.560e-117	39.97	Helicase ATP-binding domain-containing protein n=2...	[more]
UPI0011EA2ED1	8.180e-111	38.58	ATP-dependent DNA helicase DDX11 isoform X2 n=1 Ta...	[more]
UPI0011E9E22B	8.360e-111	38.58	ATP-dependent DNA helicase DDX11 isoform X1 n=2 Ta...	[more]
A0A669E237_ORENI	3.750e-110	39.42	Helicase ATP-binding domain-containing protein n=3...	[more]
UPI0014488D33	4.770e-110	38.24	LOW QUALITY PROTEIN: ATP-dependent DNA helicase DD...	[more]
A0A2I4ATX3_9TELE	6.060e-110	38.98	putative ATP-dependent RNA helicase DDX11-like pro...	[more]
A0A6P7MU22_BETSP	9.100e-110	38.71	ATP-dependent DNA helicase DDX11 n=1 Tax=Betta spl...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig139	contig	E-siliculosus-1a_F_contig139:302..7353 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	1479
Model size	2310
Exons	11
Hectar predicted targeting category	other localisation
BRITE	ko00000,ko01000,ko03036
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	KL
EC	3.6.4.13
EggNOG OGs	COG1199@1,KOG1133@2759
EggNOG free text desc.	ATP-dependent DNA helicase activity
GOs	GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0033554,GO:0034085,GO:0034641,GO:0034645,GO:0035861,GO:0036297,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045005,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0090734,GO:0098813,GO:0140014,GO:0140097,GO:1901360,GO:1901576,GO:1903047
KEGG ko	ko:K11273
Preferred name	CHL1
Seed eggNOG ortholog	2880.D8LPY7
Seed ortholog evalue	2.6e-232
Seed ortholog score	811.2
Taxonomic scope	Eukaryota

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927900.863188-UTR-E-siliculosus-1a_F_contig139:301..435	1622927900.863188-UTR-E-siliculosus-1a_F_contig139:301..435	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig139 302..435 +
1696318729.782881-UTR-E-siliculosus-1a_F_contig139:301..435	1696318729.782881-UTR-E-siliculosus-1a_F_contig139:301..435	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig139 302..435 +
1622927900.8808544-UTR-E-siliculosus-1a_F_contig139:773..933	1622927900.8808544-UTR-E-siliculosus-1a_F_contig139:773..933	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig139 774..933 +
1696318729.7984202-UTR-E-siliculosus-1a_F_contig139:773..933	1696318729.7984202-UTR-E-siliculosus-1a_F_contig139:773..933	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig139 774..933 +
1622927901.8114195-UTR-E-siliculosus-1a_F_contig139:6816..7353	1622927901.8114195-UTR-E-siliculosus-1a_F_contig139:6816..7353	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig139 6817..7353 +
1696318729.9082139-UTR-E-siliculosus-1a_F_contig139:6816..7353	1696318729.9082139-UTR-E-siliculosus-1a_F_contig139:6816..7353	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig139 6817..7353 +

The following CDS feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig139.2307.1	prot_E-siliculosus-1a_F_contig139.2307.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig139 934..6816 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig139:302..7353+
coding sequence from alignment at E-siliculosus-1a_F_contig139:302..7353+

protein sequence of mRNA_E-siliculosus-1a_F_contig139.2307.1

>prot_E-siliculosus-1a_F_contig139.2307.1 ID=prot_E-siliculosus-1a_F_contig139.2307.1|Name=mRNA_E-siliculosus-1a_F_contig139.2307.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=493bp
MLEINDFLFRAGLDNVNIFKLQRYMRRSEISRKVMGFMDLSAASSPEVTL
RKNTSLSRNGNDGNTDDNGCGCSKATTTATSTTATTTAAATAGAGGGEDA
AAAAGVFVSKHVSALQTVEAFLDALTNASRDGRVLATFGGKEGDGRSSSR
GSVGGGGGRGASAGQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLV
GGTMQPTGDLVRQLFSSVEPSRVEVFSCGHVIPRENLLPLCVSKGPSGKT
FNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWK
ASGTLRQLNKLKSVFSEPRSAKDVDVVLREFSIAARAGAWKPTTSGGGGG
GGGSSGGGLLLSVVGAKMSEGINFSDDLARCVVMVGLPYPDKRDAELKQK
MAYLDEASPSSIGRAGREYYSSICMRAVNQSIGRSIRHAGDYASILLVDE
RYKDDQVVRLLPGWIAERVVKAANFGQCFVALRRFFAEMHAR*

mRNA from alignment at E-siliculosus-1a_F_contig139:302..7353+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig139.2307.1 ID=mRNA_E-siliculosus-1a_F_contig139.2307.1|Name=mRNA_E-siliculosus-1a_F_contig139.2307.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7052bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig139:302..7353+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGCAGGTGGCGCGCGCGCACTCCCAGCTGTCCCAGTACGAGGCCAAGTA
CGGTACCCGGCTCAAGGGCTCGAACGCGTTTTACGTCGGCAACATCCTCA
GGCTCCTGCGGGCCGTCCTCAAGTTCCTCACCAAGTGAGCCAGGAGGACG
GGCTTCCGTTTTTTTTTTTTGTACTCGCCTTCTGTTTTGGGATTTCGGAG
GAGGGGGGTGAGTGAAGCGTGGTTGTTGGAGTACATACCCCTTGTTTTTG
AAATGCAATGCTTGTTTTTCTCCCGTTCGGTTCTGACGTTTCGTTGGGGT
TGACTTTGGAGTAGAAACGTTTCCTCCCCTTCTCGAAAGTGTTGAGAAGC
AACGTCTATTTGCCGATCTTACCGCCCCCTTGGTCAATGGTCTAACGGCC
AAGGCATACAAAACATGACAGTACGCTCCCATCCCCCCCCCCGGCCGGGG
TCCTCGCCATTCATCCCACCAGGGGCAGGGAGAAGCTCCAGGCTGCTCGC
GCCGAAAACATCAAGACCACAGCGGCCGCATCAGTCTCCAAAGGAAATAC
CGGGGTGCAAGGCCCGAGGGGGGTCGGCGCTGCTGCTGCTGCTGCCGGCG
GCGAGGCCGAGGAGGCGGGGGTCCGATCGGAGATGTTGGAGATCAACGAC
TTCTTGTTCCGGGCGGGCCTGGACAACGTGAACATCTTCAAGCTGCAGCG
TTATATGCGGCGGAGCGAGATCTCAAGGAAGGTGTGCGTGCGGTCGTCGA
GATACGCTTCAGAAGAGAAGGAGAAAAGGAAGGGAAGAAGATACAGGCGG
TCGTCCCTCTCGCGTGTAAATTATTTTCTGTTGTGAACCGCGCGTCGATC
GGTGTAGTGGCCTAAAGGTTTCGTCTCGACCAAGCCCCGGTTGGCTCTCA
TATGTGTGTGTGGGCGTGTGCGTGCGTAGCGCGCGCGCGCGTGTGTGTGT
CTGTGTGGTTATTATTTGCATCGACCGCGCTACCCGGCTGACCAATGAAA
AGACGTCAGTCTCTGTGCCGTTTGTGTGTGTGTGTGTGTGTGTGACTTTT
GTCGGACTCCCGCCGATCGTTGAAAATTCGATAGTGTTGGTGGGCCGAAG
TATACGGTTGGGTTCTGTTCTTTCGTTTTTTTCAACCGCTCTTGGCGGCG
GCTGACCAGTGAGCGACGGCGTTAGCGTCTGCGGGATGAATCACGCCAGA
ATGTTCAAGTATACTCGTGTGTGTTTCGAATCCCATCGGGTGGTCGTCCC
CTATCCTGGGCGGTGCGCAGATGGGCCTGGGAGGAGAAGTTCAGTCTTGC
TGTCAACAATAACTCGCAAGTCCCCGAGACCCCTACCGCTGCTGATGCTG
TATGTTTTCAGGTGATGGGTTTCATGGATCTTTCGGCGGCGTCTTCCCCC
GAGGTTACCCTTCGGAAGAACACCTCGCTGTCTCGAAACGGCAACGACGG
CAACACCGACGACAACGGTTGCGGGTGCTCCAAAGCGACAACAACTGCAA
CCTCGACGACCGCAACAACGACAGCAGCAGCAACGGCGGGAGCGGGGGGC
GGGGAAGATGCTGCTGCTGCTGCGGGAGTGTTTGTGAGCAAGCATGTCTC
GGCGTTACAGACCGTGGAGGCCTTCTTGGACGCACTCACGAACGCTAGCA
GGTAACGACTTCTGACGTGAGCGGCGAGGGCACACAAGAAACAAACCTCT
TGTTGCCCGATTGTACGGCAGCTAGCTGTTTCGTTGCCAACACCTCGCAG
TGTTGGCTTGATATGTATTACGTGTGTTTTTCCGCCGTGACATTGCACGT
GCTTTGTTCTTCGGTGGGGAAAAACAGCCGAAAGACGCGGCGGAGGGGAC
ATGAGAGCATACCAGTTTTGTGTTTTTTTCATGTCGAATTGGACGTGTGA
GGACACGCTTTGATGTGACGATCTGATGTGGCATTGGCAGAATTTCTCCG
CCCCGGCGATGTGGTTGAATTTTCGCTGTTACCGCTGTCAAGAGGGCTCA
TCAGCATGTAGACGTGTCATCCTCCGACTAACTACATGTGGGTACCTTTA
TTTGACTGTCGTCCAACAACCGAAGTAGCGAAATATCACAACAATGACAC
GGAGCACTCATACCAGCACAAAAAAAAAACAAGATACCAGCAAGAAGTCT
TTCACGCGCCAGATAGAGTATACGAAACCCCGTTCCATGCTCTGCTTTCC
GGTTTGGTTTCCTCAAAGGGATGGCCGCGTTCTCGCCACGTTCGGTGGAA
AGGAGGGGGACGGGCGTAGCAGCAGTCGTGGCAGTGTGGGAGGCGGCGGG
GGCAGAGGGGCTTCCGCCGGACAGAAGACGACGCAAGATGAAGAAGAACC
TTCCGTGAAGTTTCTGATGCTCAACCCCGCCGTACACTTCGACGAGATCG
TCCAAAAGGTATACTGTATCGGTTGTTGCTGCTGCTGATGCTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TCTTGAGATGAAGGGTTGTTCTGACCTCAACTTGCAATGTGCGTCCACCC
GACGTAACTTGCAGAAATATGTCTTGAGCACATATACAAGTGGTATAATG
CGTGCGAGCCCAACACGAAGGCAAATTTTGTCTTCTCTCCGACATTATAA
CTTAACCTTCTAGTGGTCTTACCCTGCTACGTAGCGCGATAGCTGTGAAC
GCGTGGCCAACGCACGACCACGCGCACGCCGCTTGTAGCCCGTTGTCGCT
CTGATTGCTGTCATTTTTATCGGCAACGTTGCTGTTGATGTTGTTCTTGC
AACGGAAGGCGAGAGGGTTGGTGCTAGTCGTCGCGCTCGTAACCAGCTGT
TGCTCTGATTGCCGCCGTCGTTGTCGGCAACGTCACTGCTGTTGTTGTGA
TTGTAATGCAATGCGAGAGGGTTGGTGCTAATAGTCGGCGCGCTCGTAAC
CCGCTGTTGCTCTGATTGCCGCCGTCGTTGTCGGCAACTTCATTGCTGCT
GTTGTGATGTCGGCAACGTCACTGCTGTTGTTGTGATTGTAATGGAAGGC
GAGAGCATTGGTGCTAGTCGGGGGCACCATGCAGCCTACGGGAGACCTGG
TCCGGCAGCTCTTCTCCTCCGTGGAGCCGTCGAGAGTCGAGGTCTTCAGC
TGCGGGCACGTGATTCCCAGGGAGAACCTGCTCCCGCTCTGCGTGTCCAA
GTGCGTGCGTTCATACGTGTGTGTGTGTGTGTGTGTCTTTATTGCTTTGC
GTCGAACCCTAACCGGTTGACCAACATGTCCTTGTCTCTAAAAGTCACAT
CGACCGCGCTAACCGGCTGACCAACGTGTCTTGAGTCTTTTTTTAGTATT
AGCATCGACTGCGCTAAACGGCCGACCAATGAAGAGACTTCAGTCTGAAC
AGCGTCACAAGAAAACGGGAATTATAGGTGTGTGTGCTACTTGCTGGGCC
GCGGGTCGGGTGCAGAAACGCACTGCCCGTGGAGTAGCCTCCACGTTGAC
CCATCACCGAAACTTCCACCGATTGGCGGCTGAAGCACCGGATTGTGCGC
GTGGGACGTTTGTTTCCTCGCACATGTTGAAACGGCAGCGGGTTGACCAA
CCGCGACGTGTGTGGAAGCGCGCTCTGATTTACGTCAAGGACCAGCAGTG
GGAAATTGTGTTTTTCTTTTTGAAGAGCGAGAGTCCGTGTGGTCCGCATG
AGTGCACGGCCGTCAATTGGTTCGCCGGGAGGACGTGTCTCCAGCTCGTG
TGAATCCTTCACCGTTCGCCCATGTGTTACAGGGGGAAAGGGAATGGACG
TTTTCGGTCTGACGAGTATGACAAGGAGAAAAGGGAATTGATGTTTTTGG
TGGGATTAGTGTGCCAGGGGGAAAAGGGGGATTGATGTATTTGGTGGGAT
TGGTACGACAGGAGTGAACGTCTCGGGTGTGATTAGTATGGCGGGGGGAA
GGGGAGTTGACGTTTTCGATGTCGTTGGTGCTCTCTTGCGGCAACTAGTA
GGAACTCTCTCAAGGGTGTGTCGTAACGAGTTCGCTCACGATTCCCAACA
TCGCAGGGGTCCCTCGGGAAAGACTTTCAACTTCACCTTCCACCGCCGCG
GCACCGACGAGCAGCTGGACGAGCTCGGTCGGCTCATGACCAACGTTTGC
AAACTCGTCCCTGGAGGGGTGGTGTGCTTCCTCGCCTCCTATGGATATCT
CGATCAGGTCAGTTTTGTTCTGTTACACACACCTTGCGCGTCCAACAACA
CAGTGATTGGTGAAAATGAAAATGGAGATATGTTAGTTGAGAAACATGCA
TCGTTTGACAAAGTGGTGGTGTTGTCGTTTCCTGTGGTCAACCACTTGCT
ACAAATCATGATGGCATCGGTGTGATGGAGGATTGATCGTGTCTGCTCGG
CGCGTGATACTTCGGGGTAGCGTTTTCGGGCGTGGCAGTTGCGGCGGGAG
GAACTTTCTCCCGGCGCTCCTCCCAGGCAAGAGTCTCGAAGAAGCTCCAG
GTGCCCACGCCGTGCCTTACGCGCGCATACCCTCCTCAACTTGTGGACGG
ACTCATATCGGACTGCCTCCCGCCTCTTGTCGTTGTCGCACAGGTTTTAC
AGAGATGGAAGGCTTCCGGCACGCTCCGACAGCTCAACAAGTGAGTCTAC
ACGGCCGCTCGCAGATTTGCTGCTGCGTCGGCTAATGGTGGTATGCGCAA
TCCCACGTCAATCTTGGTATCCCCCCACCCTGTCACACGCTTTGTCGAAC
ACCTCACGAAGCTTCGCCAAGGCCTTGCGAGCCTGGTCATTGAATACCCT
ACGGCGTGCCCCCTTCTTGTCTTCGCATGGACGCGACGTCACTGTTCGAA
AGAATCCCTGCAAGCATTGTCCGCAGCACACACAAACCCAACACTCTCCC
CCCAACACACACGCTTGCCGTTCCTGGAATTTGTCGGGACGTCGCCTGGC
AGGCTCAAGTCTGTCTTTTCCGAGCCCCGGTCAGCCAAGGACGTGGACGT
CGTTCTCAGGGAATTCTCCATTGCCGCCAGGGCGGGGGCATGGAAGCCAA
CAACTAGTGGCGGCGGCGGCGGCGGCGGTGGCAGCAGCGGGGGGGGGCTG
CTGCTGTCGGTGGTCGGGGCGAAGATGAGCGAGGGGATCAACTTTTCGGA
CGATCTCGCCAGGTACTGGTGTTGCTGGGGTGTTATTTTTGTTGTTGCTT
GGCTATCGATACCGTCCCTCGACCTTTGGCTTGATTCCTTCGTTTCCGCT
CAAGGAGAAGAGACGAGGTTGAAGTACGACAACCTGCCCCGTTGTAGGCG
ATCACCCCCCCACCCCGAGCAATATTATCCCTTACCCCTTGAATGAACAC
GGTTGCACGAATGCGTGGAATCTTTCCCACCTTCGCCGGGATCGTTTGGC
GGCTTGGGTGGCGCGCTCTGGTAGGTGCGTGGTGATGGTTGGACTGCCCT
ATCCGGACAAGCGGGACGCGGAGTTGAAGCAGAAGATGGCCTACCTCGAC
GAGGCCTCTCCCAGCAGGTACGTGTGTATTCGAGATAGTTTTAGCCCCAG
TTCTTGCAGCGAGTTGTCTGCTGAGCAGTGAGTTCGAGTTGGGTACGCAT
GGCGAGACCTGTGGAAACCCTCTGTCCGCTGCGAGCTGCCCTCGGGCCAG
AACATTCGTACGAGTTTCTCGGCTGCGTGCTTGCTCAGAGTCGCTCGACC
GTGTAGAACAAGGGGCACTGTACACGCCTGGACCGAAGAAACCCGCTAGT
CCAATCCATGGCATTGCAAGTTGCACCTCCCGTACTACCGGGTATCGTTT
CACAAGGTCTCACTCGTTTCTTTTTCGTGCTTCTTCTAAACCAACAGCAT
CGGGCGCGCAGGCCGCGAGTACTACAGCAGCATCTGCATGAGGGCCGTCA
ACCAGTCGATCGGGCGATCCATCCGACACGCGGGAGACTACGCCAGCATT
CTTCTTGTGGACGAACGTTACAAGGACGACCAGGTGCGCATTATTGCACA
AATCATGGCCGCATCGATGTATGCTGTTCTCGATCGTGTTTGGGTGTTCT
TACTTGAGTTTTGGCGAGCTCCGTGCGTGAGTGAACGCTGTGAAGCCAGT
GCCGAGAAAGGGGTGGAAGGCTGTACTACCCCGTGACCCTGGTTTCGGCC
GATCGGACTATTGCCCAAAATGATGAGAGTAGTCTATGCTATTGCTATGT
AGGTCAGATACCTATGAATGGAGACAATGAAAAGCTTTGATAATTGTCTC
ACCGTGAGCACCCGACGGCTAATGAAGTGAGCTGTTCCATTGTGAGTTAC
AAGCGATGCCCAGTACTCTTGAGGAATGATCATTATCCTTCGAGGTTCTC
TTTTTCACGTGTGACGAGCGCCGATACCCTCCACGTTTGCCTCGCTGCTT
GTAGGTTGTTCGACTTCTGCCTGGCTGGATCGCCGAGAGGGTAGTGAAGG
CCGCGAATTTCGGGCAGTGCTTTGTCGCTCTCCGTAGGTTCTTCGCGGAG
ATGCACGCCCGATAGGGAAGCTTTGCGACGGGGTAGCAGCGGAGTATCAA
TATCTGAGCGATTTGCCCTGTGCTGTTTCGTGTGTCACTTGGCGTGTTTT
ATGGTGGCGGTTGTGAGCAGCAAGTTCGTTTGGAGGTTTGCGGCGCCTGA
CCTGCAGCGGGGGTGGAGCCGCCAGGTTAGAAGTGAAACGTTTTTCGATA
TTCACTCATTCCGAGAAAACCTATACGCACACCGGATAGAATTAGTAGAA
TTAGAACCCAAAGAGAGCGTGTCGAGTTCGCAAGGCTTGGTGCTTCACCA
CCCGTGGCTGCAGATGACGTCATGGGCATGAAGTACCCCTCCCGTTTTCT
CTAGCGGGGTGCTGTTACGGCAGGTAGAAATACCTGAGAGTACGTCTATG
TGTGCAGAGTGACGGTGCCTCGACTTGAGACGAATATTGAGACATCTTTC
CTCCAACATTGTACCGTACGTCGTGGCGTAGAGAGGGGTCTGGATGGGAG
CAGAAAATGGCGTGCGTTGACTGACCGTTCCACCGAGTCTTACACGACGG
GA

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig139:302..7353+

>mRNA_E-siliculosus-1a_F_contig139.2307.1 ID=mRNA_E-siliculosus-1a_F_contig139.2307.1|Name=mRNA_E-siliculosus-1a_F_contig139.2307.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2958bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig139:302..7353+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTGGAGATCAACGACTTCTTGTTCCGGGCGGGCCTGGACAACGTGAA
CATCTTCAAGCTGCAGCGTTATATGCGGCGGAGCGAGATCTCAAGGAAGA
TGTTGGAGATCAACGACTTCTTGTTCCGGGCGGGCCTGGACAACGTGAAC
ATCTTCAAGCTGCAGCGTTATATGCGGCGGAGCGAGATCTCAAGGAAGGT
GATGGGTTTCATGGATCTTTCGGCGGCGTCTTCCCCCGAGGTTACCCTTC
GGAAGAACACCTCGCTGTCTCGAAACGGCAACGACGGCAACACCGACGAC
AACGGTTGCGGGTGCTCCAAAGCGACAACAACTGCAACCTCGACGACCGC
AACAACGACAGCAGCAGCAACGGCGGGAGCGGGGGGCGGGGAAGATGCTG
CTGCTGCTGCGGGAGTGTTTGTGAGCAAGCATGTCTCGGCGTTACAGACC
GTGGAGGCCTTCTTGGACGCACTCACGAACGCTAGCAGGTGATGGGTTTC
ATGGATCTTTCGGCGGCGTCTTCCCCCGAGGTTACCCTTCGGAAGAACAC
CTCGCTGTCTCGAAACGGCAACGACGGCAACACCGACGACAACGGTTGCG
GGTGCTCCAAAGCGACAACAACTGCAACCTCGACGACCGCAACAACGACA
GCAGCAGCAACGGCGGGAGCGGGGGGCGGGGAAGATGCTGCTGCTGCTGC
GGGAGTGTTTGTGAGCAAGCATGTCTCGGCGTTACAGACCGTGGAGGCCT
TCTTGGACGCACTCACGAACGCTAGCAGGGATGGCCGCGTTCTCGCCACG
TTCGGTGGAAAGGAGGGGGACGGGCGTAGCAGCAGTCGTGGCAGTGTGGG
AGGCGGCGGGGGCAGAGGGGCTTCCGCCGGACAGAAGACGACGCAAGATG
AAGAAGAACCTTCCGTGAAGTTTCTGATGCTCAACCCCGCCGTACACTTC
GACGAGATCGTCCAAAAGGGATGGCCGCGTTCTCGCCACGTTCGGTGGAA
AGGAGGGGGACGGGCGTAGCAGCAGTCGTGGCAGTGTGGGAGGCGGCGGG
GGCAGAGGGGCTTCCGCCGGACAGAAGACGACGCAAGATGAAGAAGAACC
TTCCGTGAAGTTTCTGATGCTCAACCCCGCCGTACACTTCGACGAGATCG
TCCAAAAGGCGAGAGCATTGGTGCTAGTCGGGGGCACCATGCAGCCTACG
GGAGACCTGGTCCGGCAGCTCTTCTCCTCCGTGGAGCCGTCGAGAGTCGA
GGTCTTCAGCTGCGGGCACGTGATTCCCAGGGAGAACCTGCTCCCGCTCT
GCGTGTCCAAGCGAGAGCATTGGTGCTAGTCGGGGGCACCATGCAGCCTA
CGGGAGACCTGGTCCGGCAGCTCTTCTCCTCCGTGGAGCCGTCGAGAGTC
GAGGTCTTCAGCTGCGGGCACGTGATTCCCAGGGAGAACCTGCTCCCGCT
CTGCGTGTCCAAGGGTCCCTCGGGAAAGACTTTCAACTTCACCTTCCACC
GCCGCGGCACCGACGAGCAGCTGGACGAGCTCGGTCGGCTCATGACCAAC
GTTTGCAAACTCGTCCCTGGAGGGGTGGTGTGCTTCCTCGCCTCCTATGG
ATATCTCGATCAGGGGTCCCTCGGGAAAGACTTTCAACTTCACCTTCCAC
CGCCGCGGCACCGACGAGCAGCTGGACGAGCTCGGTCGGCTCATGACCAA
CGTTTGCAAACTCGTCCCTGGAGGGGTGGTGTGCTTCCTCGCCTCCTATG
GATATCTCGATCAGGTTTTACAGAGATGGAAGGCTTCCGGCACGCTCCGA
CAGCTCAACAAGTTTTACAGAGATGGAAGGCTTCCGGCACGCTCCGACAG
CTCAACAAGCTCAAGTCTGTCTTTTCCGAGCCCCGGTCAGCCAAGGACGT
GGACGTCGTTCTCAGGGAATTCTCCATTGCCGCCAGGGCGGGGGCATGGA
AGCCAACAACTAGTGGCGGCGGCGGCGGCGGCGGTGGCAGCAGCGGGGGG
GGGCTGCTGCTGTCGGTGGTCGGGGCGAAGATGAGCGAGGGGATCAACTT
TTCGGACGATCTCGCCAGGCTCAAGTCTGTCTTTTCCGAGCCCCGGTCAG
CCAAGGACGTGGACGTCGTTCTCAGGGAATTCTCCATTGCCGCCAGGGCG
GGGGCATGGAAGCCAACAACTAGTGGCGGCGGCGGCGGCGGCGGTGGCAG
CAGCGGGGGGGGGCTGCTGCTGTCGGTGGTCGGGGCGAAGATGAGCGAGG
GGATCAACTTTTCGGACGATCTCGCCAGGTGCGTGGTGATGGTTGGACTG
CCCTATCCGGACAAGCGGGACGCGGAGTTGAAGCAGAAGATGGCCTACCT
CGACGAGGCCTCTCCCAGCAGGTGCGTGGTGATGGTTGGACTGCCCTATC
CGGACAAGCGGGACGCGGAGTTGAAGCAGAAGATGGCCTACCTCGACGAG
GCCTCTCCCAGCAGCATCGGGCGCGCAGGCCGCGAGTACTACAGCAGCAT
CTGCATGAGGGCCGTCAACCAGTCGATCGGGCGATCCATCCGACACGCGG
GAGACTACGCCAGCATTCTTCTTGTGGACGAACGTTACAAGGACGACCAG
CATCGGGCGCGCAGGCCGCGAGTACTACAGCAGCATCTGCATGAGGGCCG
TCAACCAGTCGATCGGGCGATCCATCCGACACGCGGGAGACTACGCCAGC
ATTCTTCTTGTGGACGAACGTTACAAGGACGACCAGGTTGTTCGACTTCT
GCCTGGCTGGATCGCCGAGAGGGTAGTGAAGGCCGCGAATTTCGGGCAGT
GCTTTGTCGCTCTCCGTAGGTTCTTCGCGGAGATGCACGCCCGATAGGTT
GTTCGACTTCTGCCTGGCTGGATCGCCGAGAGGGTAGTGAAGGCCGCGAA
TTTCGGGCAGTGCTTTGTCGCTCTCCGTAGGTTCTTCGCGGAGATGCACG
CCCGATAG