mRNA_E-siliculosus-1a_F_contig1387.2297.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1387.2297.1 vs. uniprot
Match: D7FMV2_ECTSI (Similar to kinesin-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV2_ECTSI) HSP 1 Score: 2474 bits (6412), Expect = 0.000e+0 Identity = 1453/1631 (89.09%), Postives = 1477/1631 (90.56%), Query Frame = 1
Query: 91 LLRLPILLLQLIFLAALANLDLFGAAALTTVLDHRGFPLLQAPGAEDHRFSRSEDTQTSGRGSGGGMKRVDLVHIGTFVVQHASTVVKPSSSSRRWDESETSHLPDYVLELLAGREVGTRPGNGEKKNGADGGSAATSPGVVEPLILLNGHVCTMLSLGKPSVGGLGSEGAGFLLQEPYAWESDEEAEGFVLPPWMWDAVGGEMGGGNLLMTQAPIANITRGSSCWPPHRKGNYSDPIASVDEYRVDKDSSHVGRDGCFEPFLQLASWGRGRFNPLAQFTPRETLLGGVGGGERRSVPTEAPTGTWPEGKNTTSDKVMHAIRTREGGLEIAPAGDLHLQSGVARPGGEVLGGDVHVAARGEHGLIRLRSGSLEWSPASPLLPECPSSDCHPRGAVASLRVDDGTLEATGFSEAVRLSSARSFEVAIAAAGEEQKEGGKNDGIGHEHVRGVGEGPHQHGYSSGMGLETKAALLKGDAGSLNTSAGVVNVEATDTLLAAGRNGVRVTSSTGDVRVDANGPHGSVVVRGGGAIVGVARAVSFTAETAAXXXXXXXXXXXXXXXXXXXXGGGYLNLSVETATIGGPQGGEGGGALLEADDEVRLRASNSSLLRISAAEVSVHTPAIFLRSSSPLTAAAAGVGEAAASSNGDGRDPAPPQQPTPTTGRQDPGTRGPGPTAAAELSLDDSGDVAVAASGSIEMETPGAFVQLSGRRSSGDGLAAGGRDXXXXXXRGGLLVAEAGDVRIRASAGVSVVVADGADARAWAEEGASNGTAAAGGRLQVFSGGVSAAGTSTSLDASERVTLRVGGSAKRCTAISPESDGGVQLAAEGEEVESSAIVELGDWGVRVLAGASAAXXXXXXXXXXXXXXXXXXXXLLNAGSRLVFVAPQLAISHVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLWSDGLALTGRADERVLLQAGLGSTSESGSKEGTQDRAGSHISVEGSWMHLCAGGGGDNSLPALSSSRTAXXXXXXXXXXXXXXXXXXXXCTGGLGGGEGPSRKGLMVEAIGAANISSTEDLRLRXXXXXXXXXXXXTSLYSPRGILLSGSSPGNDDGGXXXXXXXGTPSADHNESPSLDXXXXXXXXXXGLGLGQEEGGHVLLAPGAGSGVGIGRGFSSRHLASAAAVTNGSAWLPRSMLSLLWSPRAGAQACLCFHLEEGSRSAVRFGCEGLPYSGGLEVRHHLEGLGGDTLVLELASSPGRVVGDARGRWGVGAVPDADATGVPTQLSAALHVFAAVPLPIVAAPSGLGGSEPTKPPVASVLVESPAGSAGVMQMLSVDGSRSRPSVPELSPAPDNTIVLSSRQSGEIQEGSTYNHWVMSQLAAGRDKKAGSASRPQWADPQAYHSSWAGGMTLTHVVAGGGPSGWRPALGTAQQXXXXXXXXXXXAGAPGGDHGGVAARPAVAFGVDGRAGFGTCSTGARVTVGGALMAEQVLVLSDEGMVRDVESLGAQGNSQAMEAVREVEVVTFGWTNEASFSYGLDLEVRQLGIIAQQAEREKRSSSLAWRDAATGRKAVSHSRLLATLVAAFQHLDASIQANGTIRDARLQELERALASAQESSGQVSDRLEAVEAMAKRGLDSSLAQGRDVSTLEGRLME 4983
+LRLPILLLQLIFLAA ANLDL GAAALTTVLD RGFPLLQAPGAEDHRF RSEDTQT GRGS GG++RV+LVHIGTFVVQHASTVVKPSSSSRRW ESETSHLPDYVLELLAGREVGTRPG+GEKKNG DGGSAATSPG VEPLILLNGHVCT+LSLGKPSVGG GSEGA FLLQEPYAWESDEEAEGFVLPPWMWDAVGGEMGGGNLLMTQAPIAN+T GSSCWPPHRKGN+SDPIASVDEYRVDKDSSHVGRDGCFEPFLQLASWGRGRFNPLAQFTPRE LLGGVGGGERRSVP EAP GT PEGKNTTSDKVMHAIRTREGGLEI PAGDLHLQSGVARPGGEVLGGDVHVAARGE GLIRLRSGSLEWSPASP LPECPSSDCHPRGAVASLRVDDGTLEATGFSEAVRLSSARSFEVAIAA GEEQK+GGKNDGIGHE RGVGEGPHQHGYSSG GLETKAALLKGDAGSLNTSAGVVNVEATDTLLAAGRNGVRVTSS GDVRVDANGP GSVVVRGGGAIVGVA VSFTAETAAXXXXXXXXXXXXXXXXXXXX YLNLSVE ATIGGPQGGEGGGALLEADDEVRLRASNSSLLR+SAAEVSVHTPAIFLRSSSPLTAAA PPQQP TTGRQDPG RGPGPTAAAELSLDDSG VAV ASGSI METPGAFVQLSGRRS GDGLAAGGRD XXX RGGLLVAEAGDVRIRASAGVSVV ADGA+ARAWAEEGASNGTAAAGGRL+VF GVSAAGTSTSLD+SERVTLRVGGSAKR TA+SPESDGGVQ AAEGEEVESSAIVELGDWGVRVLAGASA XXXXXXXXXXXXXXXXXXXXLLNAGSRLVFVAPQLAISHVGGXXXXXXX XXXXXXX GLWSDGLALTGRADERVLLQAGLGSTSES SK+G QDRAGSHISVE SW+HLCAGGGGD+SLPALSSSR A XXXXXXXXXXXXXXXXX CTGGLGGGEGPSRKGLMVEAIG ANISSTEDLRLR TSLYSPRGILLSGSSP N DGGXXXXXXX SADH ESPSLD GLGLGQEEGGHVLLAPGAGS GRGFSSRHLASAAAVT+GSA LPRSMLSLLWSPRAGAQACLCFHLEEGSRSAVRFGCEGLPYSGGLEVRHHLEG GGDTLVLELASSPGRVVGDARGRWGVGAVPDADATG PTQLSAALHVFAAVPLP VAA SGLGG EPTKPPVASVLVESPAGSAGVMQMLSV GS SRPSVPELSPAPDNTIVLSSRQSGE QEGST+NHWV+SQLAAGRDKKAGSASRPQWADPQA HSSWAGGMTLTHVVA GGPSGWRPALGTAQQ XXXXXXXXXXAGAPGGDHGGVAARPAVAF V+GRAGFG CSTGARVTVGGALMAEQVLVLSDEGMVRDVESLGAQGNSQAMEAVR V+VVTFGWTNEAS SYGLDLEVRQLGIIAQQAEREKRSSSLAWRD ATGRKAVSHSRLLATLVAAFQHLDASIQANGTIRDARLQELERA ASAQESSGQVSDRLEAVEAMA RGLDS L RD S E +L+E
Sbjct: 1 MLRLPILLLQLIFLAASANLDLLGAAALTTVLDQRGFPLLQAPGAEDHRFPRSEDTQTCGRGSDGGLQRVNLVHIGTFVVQHASTVVKPSSSSRRWGESETSHLPDYVLELLAGREVGTRPGSGEKKNGTDGGSAATSPGAVEPLILLNGHVCTVLSLGKPSVGGFGSEGADFLLQEPYAWESDEEAEGFVLPPWMWDAVGGEMGGGNLLMTQAPIANVTGGSSCWPPHRKGNFSDPIASVDEYRVDKDSSHVGRDGCFEPFLQLASWGRGRFNPLAQFTPREILLGGVGGGERRSVPPEAPLGTRPEGKNTTSDKVMHAIRTREGGLEIVPAGDLHLQSGVARPGGEVLGGDVHVAARGEQGLIRLRSGSLEWSPASPSLPECPSSDCHPRGAVASLRVDDGTLEATGFSEAVRLSSARSFEVAIAATGEEQKDGGKNDGIGHEQGRGVGEGPHQHGYSSGTGLETKAALLKGDAGSLNTSAGVVNVEATDTLLAAGRNGVRVTSSAGDVRVDANGPDGSVVVRGGGAIVGVAPTVSFTAETAAXXXXXXXXXXXXXXXXXXXXXXXYLNLSVEAATIGGPQGGEGGGALLEADDEVRLRASNSSLLRVSAAEVSVHTPAIFLRSSSPLTAAAXXXXXXXXXXXXXXXXXXPPQQPPQTTGRQDPGARGPGPTAAAELSLDDSGGVAVTASGSIGMETPGAFVQLSGRRSGGDGLAAGGRDDXXXLGRGGLLVAEAGDVRIRASAGVSVVAADGAEARAWAEEGASNGTAAAGGRLEVFPEGVSAAGTSTSLDSSERVTLRVGGSAKRRTAVSPESDGGVQSAAEGEEVESSAIVELGDWGVRVLAGASAXXXXXXXXXXXXXXXXXXXXXLLNAGSRLVFVAPQLAISHVGGXXXXXXXEGSARRHGAAGSGTIIEDPFSXXXXXXX-GLWSDGLALTGRADERVLLQAGLGSTSESSSKKGAQDRAGSHISVEESWIHLCAGGGGDSSLPALSSSRMASXXXXXXXXXXXXXXXXXSGCTGGLGGGEGPSRKGLMVEAIGEANISSTEDLRLRAEGRIQISSPNDTSLYSPRGILLSGSSPRNGDGGXXXXXXXXXXSADHKESPSLDGAGLGGKGHNGLGLGQEEGGHVLLAPGAGSXXXXGRGFSSRHLASAAAVTSGSAGLPRSMLSLLWSPRAGAQACLCFHLEEGSRSAVRFGCEGLPYSGGLEVRHHLEGPGGDTLVLELASSPGRVVGDARGRWGVGAVPDADATGAPTQLSAALHVFAAVPLPTVAASSGLGGGEPTKPPVASVLVESPAGSAGVMQMLSVGGSSSRPSVPELSPAPDNTIVLSSRQSGEAQEGSTHNHWVVSQLAAGRDKKAGSASRPQWADPQADHSSWAGGMTLTHVVADGGPSGWRPALGTAQQSXXXXXXXXXXAGAPGGDHGGVAARPAVAFSVNGRAGFGACSTGARVTVGGALMAEQVLVLSDEGMVRDVESLGAQGNSQAMEAVRGVDVVTFGWTNEASLSYGLDLEVRQLGIIAQQAEREKRSSSLAWRDVATGRKAVSHSRLLATLVAAFQHLDASIQANGTIRDARLQELERASASAQESSGQVSDRLEAVEAMATRGLDSLLEWRRDRSLREKQLLE 1630
BLAST of mRNA_E-siliculosus-1a_F_contig1387.2297.1 vs. uniprot
Match: A0A6H5KPL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL0_9PHAE) HSP 1 Score: 1914 bits (4957), Expect = 0.000e+0 Identity = 1167/1626 (71.77%), Postives = 1215/1626 (74.72%), Query Frame = 1
Query: 94 LRLPILLLQLIFLAALANLDLFGAAALTTVLDHRGFPLLQAPGAEDHRFSRSEDTQTSGRGSGGGMKRVDLVHIGTFVVQHASTVVKPSSSSRRWDESETSHLPDYVLELLAGREVGTRPGNGEKKNGADGGSAATSPGVVEPLILLNGHVCTMLSLGKPSVGGLGSEGAGFLLQEPYAWESDEEAEGFVLPPWMWDAVGGEMGGGNLLMTQAPIANITRGSSCWPPHRKGNYSDPIASVDEYRVDKDSSHVGRDGCFEPFLQLASWGRGRFNPLAQFTPRETLLGGVGGGERRSVPTEAPTGTWPEGKNTTSDKVMHAIRTREGGLEIAPAGDLHLQSGVARPGGEVLGGDVHVAARGEHGLIRLRSGSLEWSPASPLLPECPSSDCHPRGAVASLRVDDGTLEATGFSEAVRLSSARSFEVAIAAAGEEQKEGGKNDGIGHEHVRGVGEGPHQHGYSSGMGLETKAALLKGDAGSLNTSAGVVNVEATDTLLAAGRNGVRVTSSTGDVRVDANGPHGSVVVRGGGAIVGVARAVSFTAETAAXXXXXXXXXXXXXXXXXXXXGGGYLNLSVETATIGGPQGGEGGGALLEADDEVRLRASNSSLLRISAAEVSVHTPAIFLRSSSPLTAAAAGVGEAAASSN-GDGRDPAPPQQPTPTTGRQDPGTRGPGPTAAAELSLDDSGDVAVAASGSIEMETPGAFVQLSGRRSSGDGLAAGGRDXXXXXXRGGLLVAEAGDVRIRASAGVSVVVADGADARAWAEEGASNGTAAAGGRLQVFSGGVSAAGTSTSLDASERVTLRVGGSAKRCTAISPESDGGVQLAAEGEEVESSAIVELGDWGVRVLAGASAAXXXXXXXXXXXXXXXXXXXXLLNAGSRLVFVAPQLAISHVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLWSDGLALTGRADERVLLQAGLGSTSESGSKEGTQDRAGSHISVEGSWMHLCAGGGGDNSLPALSSSRTAXXXXXXXXXXXXXXXXXXXXCTGGLGGGEGPSRKGLMVEAIGAANISST--EDLRLRXXXXXXXXXXXXTSLYSPRGILLSGSSPGNDDGGXXXXXXXGTPSADHNESPSLDXXXXXXXXXXGLGLGQEEGGHVLLAPGAGSGVGIGRGFSSRHLASAAA--------VTNGSAWLPRSMLSLLWSPRAGAQACLCFHLEEGSRSAVRFGCEGLPYSGGLEVRHHLEGLGGDTLVLELASSPGRVVGDARGRWGVGAVPDADATGVPTQLSAALHVFAAVPLPIVAAPSGLGGSEPTKPPVASVLVESPAGSAGVMQMLSVDGSRSRPSVPELSPAPDNTIVLSSRQSGEIQEGSTYNHWVMSQLAAGRDKKAGSASRPQWADPQAYHSSWAGGMTLTHVVAGGGPSGWRPALGTAQQXXXXXXXXXXXAGAPGGDHGGVAARPAVAFGVDGRAGFGTCSTGARVTVGGALMAEQVLVLSDEGMVRDVESLGAQGNSQAMEAVREVEVVTFGWTNEASFSYGLDLEVRQLGIIAQQAEREKRSSSLAWRDAATGRKAVSHSRLLATLVAAFQHLDASIQANGTIRDARLQELERALASAQESSGQVSDRLEAVEAMAKRGLDSSL 4938
+RLPILLLQ IFLAALANLDL GAAALTTVLD RGFPLLQAPGAEDHRF R EDTQT G+GSGGG++RVDLVHIGTFVVQHASTVVKPSSSSRRW ES TSHLPD VLELLAGREV TRPG+GE K+G DGGSAA SPG +EPLILLNGHVCT+LSLG+PS+GGLGSEGA FLLQEPYAWESDEEAEGFVLPPWMWDAVGGEMGGG+LLMTQAPIAN GSSCWPPHRKGNYSD IASVDEYRV K SS++GRDGCFEPFLQLASWG+GRFNPLAQF RE LLGGV GGERRS PTEAP GT P GKNTT VMHAIRTREGGL+IAPAGDLHLQSG+AR GGEVLGGDVHVAARGEHGLIRLRSGSLEWSP SP LP+CPSSDCHPRGAVASLRVDDGTLEATGFSEA+RLSSARSFEVAIAAA EE+KEGG+NDGIG ETKAALLKGDAGSLNTSAGVVNVE V+G I A E A GGGYL L+VETATIGGPQGGEGGGALLEADDEVRLR SNSSLLR+SAAEVS+ TPAI LRSSSPLTA GDGRDPAP QQP PTTGRQDPG RGPGPTAAAELSLDDSGDVAVAASGSI METPGAFVQLSGRRS GDGLAA GRD RGGLLVAEAGDVRI ASAGVSVV DG DARA AE+GASNGTAAAGGRL+VF GGVSAAG STSLDASERV LRVGG AKR TA+S ESDGGVQ AAE EEVESSAIVELGDWGVRV S LLNAGSRLVFVAPQLAISHVGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXGLWSDGLALTGRADERVLLQAGL STSESG K E + A +S S+ A A ++S +DLRLR TSLYSPRGILLSGSSP ND G XXXXX GTPSADH ESPSLD GLGLGQEEGGHVLLAPGAGSGVGIGRGFSSRHLA AAA VTN + P S +P A + G G SGGLEVRHHLEG GGDTLVLELASSPGRVVGDARGRWG+GAVPDADATGVP QLSAALHVFAAV LP VAAPSGL EPT PPVASVLVESPAGSAGVMQMLSV GSRSRPSVPELSPAPDNTIVLSSR SG+ QEGST+NHWVMSQLAAGRDKKAGSASRPQW DPQA SSWAGGMTLTHV+AG +PGGDHGGVAARPAVAFGVDGRAGFGTCSTGARVTVGGAL+AEQVLVLSDEGMVRDV+SLGAQG SQAME VREV+VVTFGWT +AS SYGLDLEVRQLGIIAQQ EREKRS+SLAWRD ATGRKAVSHSRLLATLVAAFQHLDASIQANG IRDARLQELERA ASAQESS +S+RL AVEAMAKRGLDS L
Sbjct: 1 MRLPILLLQPIFLAALANLDLPGAAALTTVLDQRGFPLLQAPGAEDHRFPRGEDTQTCGQGSGGGLQRVDLVHIGTFVVQHASTVVKPSSSSRRWGESTTSHLPDNVLELLAGREVRTRPGSGENKDGTDGGSAAISPGAMEPLILLNGHVCTILSLGEPSIGGLGSEGAYFLLQEPYAWESDEEAEGFVLPPWMWDAVGGEMGGGSLLMTQAPIANNIGGSSCWPPHRKGNYSDHIASVDEYRVGKGSSNIGRDGCFEPFLQLASWGQGRFNPLAQFASRELLLGGVSGGERRSAPTEAPLGTRPAGKNTTGGNVMHAIRTREGGLKIAPAGDLHLQSGIARAGGEVLGGDVHVAARGEHGLIRLRSGSLEWSPDSPSLPDCPSSDCHPRGAVASLRVDDGTLEATGFSEALRLSSARSFEVAIAAASEEKKEGGQNDGIGXXXXXXXXXXXXXXXXXXXXXSETKAALLKGDAGSLNTSAGVVNVE----------------------------------VQGSWVIAKKLVAFGLAQERAP--------------------GGGYLTLTVETATIGGPQGGEGGGALLEADDEVRLRVSNSSLLRVSAAEVSLQTPAIVLRSSSPLTAXXXXXXXXXXXXXXGDGRDPAPLQQPPPTTGRQDPGIRGPGPTAAAELSLDDSGDVAVAASGSIGMETPGAFVQLSGRRSGGDGLAASGRDDGEGLDRGGLLVAEAGDVRIIASAGVSVVATDGDDARACAEQGASNGTAAAGGRLEVFPGGVSAAGASTSLDASERVALRVGGLAKRRTAVSSESDGGVQSAAEREEVESSAIVELGDWGVRV----SLRWLLKPLSVTAMSLLLKSSTILLNAGSRLVFVAPQLAISHVGGGGAGVGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLWSDGLALTGRADERVLLQAGLRSTSESGGK------------FESATAVTAAKKAPKTVPVVISRSKRAGYTFVPEGVETIPCQHYPRPERHXXXXXXXXXXXXXXXXAGVGVPVASVAGKDLRLRAEGSIQISSPNDTSLYSPRGILLSGSSPRND--GGXXXXXDGTPSADHKESPSLDGAGLGRKGHNGLGLGQEEGGHVLLAPGAGSGVGIGRGFSSRHLARAAAGTIPTLLYVTNATDH-PTSHQRQRMAP--SLDALVAMESSGGDAGVSVLSPRG---SGGLEVRHHLEGPGGDTLVLELASSPGRVVGDARGRWGIGAVPDADATGVPPQLSAALHVFAAVSLPTVAAPSGLESGEPTMPPVASVLVESPAGSAGVMQMLSVGGSRSRPSVPELSPAPDNTIVLSSRHSGDTQEGSTHNHWVMSQLAAGRDKKAGSASRPQWTDPQADQSSWAGGMTLTHVIAG----------------------------SPGGDHGGVAARPAVAFGVDGRAGFGTCSTGARVTVGGALVAEQVLVLSDEGMVRDVDSLGAQGKSQAMEVVREVDVVTFGWTKQASLSYGLDLEVRQLGIIAQQVEREKRSASLAWRDVATGRKAVSHSRLLATLVAAFQHLDASIQANGIIRDARLQELERASASAQESSEHISNRLGAVEAMAKRGLDSLL 1520 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1387.2297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1387.2297.1 >prot_E-siliculosus-1a_F_contig1387.2297.1 ID=prot_E-siliculosus-1a_F_contig1387.2297.1|Name=mRNA_E-siliculosus-1a_F_contig1387.2297.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1693bp MPADRAYLPKENGSTMSLCQRRHSRWPRYMLLRLPILLLQLIFLAALANLback to top mRNA from alignment at E-siliculosus-1a_F_contig1387:18092..32871+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1387.2297.1 ID=mRNA_E-siliculosus-1a_F_contig1387.2297.1|Name=mRNA_E-siliculosus-1a_F_contig1387.2297.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=14780bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1387:18092..32871+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1387:18092..32871+ >mRNA_E-siliculosus-1a_F_contig1387.2297.1 ID=mRNA_E-siliculosus-1a_F_contig1387.2297.1|Name=mRNA_E-siliculosus-1a_F_contig1387.2297.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=10158bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1387:18092..32871+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |