mRNA_E-siliculosus-1a_F_contig13817.2274.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13817.2274.1 vs. uniprot
Match: A0A0D6E377_9GAMM (GTP cyclohydrolase FolE2 n=12 Tax=Halomonadaceae TaxID=28256 RepID=A0A0D6E377_9GAMM) HSP 1 Score: 410 bits (1053), Expect = 5.080e-143 Identity = 203/218 (93.12%), Postives = 214/218 (98.17%), Query Frame = 1
Query: 1 LKAFIASQEGLSQHAYLNVEGELPLKREALISPLAGWKSYPFSLRCQLSPAGFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTKSAVAAWLGSEEGILATPHSQRSSVECSLRLSESENGEWPLADSIENSIDRIERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDKALRQAPGVTGFQLKVVHAESLHAHDAVARSVWNW 654
L AF+ SQ+GLSQHAYL++EGELPLKR+ALISPLAGWKSYPF+LRCQL+PAGFQAEL LTVGYSSTCPCSAALARQLIQQAFEEDF+EIPLTK+AV+AWLGSEEGILATPHSQRSSVECSLRLSESENGEWPLADSIENSIDRIERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDKALRQAPGV+GFQLKVVHAESLHAHDAVARS WNW
Sbjct: 83 LNAFLTSQDGLSQHAYLSIEGELPLKRQALISPLAGWKSYPFTLRCQLTPAGFQAELDLTVGYSSTCPCSAALARQLIQQAFEEDFAEIPLTKTAVSAWLGSEEGILATPHSQRSSVECSLRLSESENGEWPLADSIENSIDRIERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDKALRQAPGVSGFQLKVVHAESLHAHDAVARSEWNW 300
BLAST of mRNA_E-siliculosus-1a_F_contig13817.2274.1 vs. uniprot
Match: A0A651D2M8_HALSX (GTP cyclohydrolase FolE2 n=2 Tax=root TaxID=1 RepID=A0A651D2M8_HALSX) HSP 1 Score: 383 bits (984), Expect = 1.410e-132 Identity = 196/218 (89.91%), Postives = 202/218 (92.66%), Query Frame = 1
Query: 1 LKAFIASQEGLSQHAYLNVEGELPLKREALISPLAGWKSYPFSLRCQLSPAGFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTKSAVAAWLGSEEGILATPHSQRSSVECSLRLSESENGEWPLADSIENSIDRIERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDKALRQAPGVTGFQLKVVHAESLHAHDAVARSVWNW 654
LK FIASQEGLSQHAYL VEGELPLKREALISPLAGWKSYPFSLRCQL+PAGFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTKSAVAAWLGSEEGILATPHSQRS VEC+LRL+E +N E P IE SIDRIE+ LGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDK LRQ P V+GFQLKVVHAESLHAHDAVARS WNW
Sbjct: 83 LKTFIASQEGLSQHAYLTVEGELPLKREALISPLAGWKSYPFSLRCQLTPAGFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTKSAVAAWLGSEEGILATPHSQRSFVECTLRLAEDDNAELP----IERSIDRIEQTLGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDKTLRQLPDVSGFQLKVVHAESLHAHDAVARSEWNW 296
BLAST of mRNA_E-siliculosus-1a_F_contig13817.2274.1 vs. uniprot
Match: UPI00110E34F7 (GTP cyclohydrolase FolE2 n=1 Tax=Halomonas sp. ATBC28 TaxID=2545264 RepID=UPI00110E34F7) HSP 1 Score: 382 bits (981), Expect = 4.640e-132 Identity = 193/218 (88.53%), Postives = 206/218 (94.50%), Query Frame = 1
Query: 1 LKAFIASQEGLSQHAYLNVEGELPLKREALISPLAGWKSYPFSLRCQLSPAGFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTKSAVAAWLGSEEGILATPHSQRSSVECSLRLSESENGEWPLADSIENSIDRIERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDKALRQAPGVTGFQLKVVHAESLHAHDAVARSVWNW 654
L+AF+ SQEGLS+ A+LNVEGELPLKREALISPLAGWKSYPF+LRCQL+P GFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTKSAVAAWLGSEEGILATPHSQRS VECSLRL++ EN E P+AD +E+SIDRIE ALGTALQTAVKRIDEQAFALANGQNLMFCEDAARR+DKALRQAP VTGFQLKVVHAESLHAH+AVA S WNW
Sbjct: 83 LRAFLTSQEGLSKQAHLNVEGELPLKREALISPLAGWKSYPFTLRCQLTPDGFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTKSAVAAWLGSEEGILATPHSQRSFVECSLRLAKGENDELPIADWLESSIDRIEAALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRVDKALRQAPEVTGFQLKVVHAESLHAHNAVACSEWNW 300
BLAST of mRNA_E-siliculosus-1a_F_contig13817.2274.1 vs. uniprot
Match: A0A265E283_9GAMM (GTP cyclohydrolase FolE2 n=6 Tax=Halomonas TaxID=2745 RepID=A0A265E283_9GAMM) HSP 1 Score: 380 bits (975), Expect = 3.800e-131 Identity = 191/218 (87.61%), Postives = 202/218 (92.66%), Query Frame = 1
Query: 1 LKAFIASQEGLSQHAYLNVEGELPLKREALISPLAGWKSYPFSLRCQLSPAGFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTKSAVAAWLGSEEGILATPHSQRSSVECSLRLSESENGEWPLADSIENSIDRIERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDKALRQAPGVTGFQLKVVHAESLHAHDAVARSVWNW 654
L F+ SQEGLSQ AYL VEGELPLKR+ALISPLAGWKSYPFSLR QL+PAGFQ ELGLTVGYSSTCPCSAALARQ IQQAFEEDFSEIPLT SAV+AWLGSEEGILATPHSQRSSVECSLRL+E EN E P+AD +E ++DRIE+ALGTALQTAVKRIDEQAFALANGQNLMFCEDAARR+DKALRQAPGV GFQLKVVHAESLHAHDAVARS WNW
Sbjct: 83 LSTFLTSQEGLSQQAYLTVEGELPLKRQALISPLAGWKSYPFSLRGQLTPAGFQIELGLTVGYSSTCPCSAALARQSIQQAFEEDFSEIPLTPSAVSAWLGSEEGILATPHSQRSSVECSLRLTEGENEELPIADWLERAVDRIEKALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRVDKALRQAPGVAGFQLKVVHAESLHAHDAVARSEWNW 300
BLAST of mRNA_E-siliculosus-1a_F_contig13817.2274.1 vs. uniprot
Match: A0A246S1I7_9GAMM (GTP cyclohydrolase FolE2 n=2 Tax=Halomonas TaxID=2745 RepID=A0A246S1I7_9GAMM) HSP 1 Score: 374 bits (960), Expect = 6.350e-129 Identity = 191/218 (87.61%), Postives = 203/218 (93.12%), Query Frame = 1
Query: 1 LKAFIASQEGLSQHAYLNVEGELPLKREALISPLAGWKSYPFSLRCQLSPAGFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTKSAVAAWLGSEEGILATPHSQRSSVECSLRLSESENGEWPLADSIENSIDRIERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDKALRQAPGVTGFQLKVVHAESLHAHDAVARSVWNW 654
L AF+ASQEGLSQHAYLNVEGELPLKREALISPLAGWKSYPF+LRCQL+P GFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLT+SAV+AWLGSEEGILATPHSQRS +EC+LRL+E ++GE P IE IDRIERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARR+DKALRQA VTGFQLKVVHAESLHAH+AVA S WNW
Sbjct: 83 LSAFLASQEGLSQHAYLNVEGELPLKREALISPLAGWKSYPFTLRCQLTPEGFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTQSAVSAWLGSEEGILATPHSQRSFLECTLRLAEDDHGELP----IERLIDRIERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRVDKALRQASEVTGFQLKVVHAESLHAHNAVACSEWNW 296
BLAST of mRNA_E-siliculosus-1a_F_contig13817.2274.1 vs. uniprot
Match: UPI0006D9E415 (GTP cyclohydrolase FolE2 n=1 Tax=Halomonas sp. HL-93 TaxID=1666906 RepID=UPI0006D9E415) HSP 1 Score: 373 bits (958), Expect = 1.280e-128 Identity = 190/218 (87.16%), Postives = 203/218 (93.12%), Query Frame = 1
Query: 1 LKAFIASQEGLSQHAYLNVEGELPLKREALISPLAGWKSYPFSLRCQLSPAGFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTKSAVAAWLGSEEGILATPHSQRSSVECSLRLSESENGEWPLADSIENSIDRIERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDKALRQAPGVTGFQLKVVHAESLHAHDAVARSVWNW 654
LK FIASQEGLSQHAYL+VEGEL LKREALISPLAGWKSYPF+LRCQL+P GFQAELGLTVGYSSTCPCSAALARQL+QQAFEEDFSEIPLT+SAV+AWLGSEEGILATPHSQRSSVEC LRL+E++N E P IE ID IE+ALGTALQTAVKRIDEQAFALANGQNLMFCEDAARR+DKALRQ+PGVTGFQLKVVHAESLHAH+AVA S WNW
Sbjct: 83 LKTFIASQEGLSQHAYLSVEGELLLKREALISPLAGWKSYPFTLRCQLTPEGFQAELGLTVGYSSTCPCSAALARQLVQQAFEEDFSEIPLTQSAVSAWLGSEEGILATPHSQRSSVECRLRLAEADNDELP----IEGLIDHIEKALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRVDKALRQSPGVTGFQLKVVHAESLHAHNAVACSEWNW 296
BLAST of mRNA_E-siliculosus-1a_F_contig13817.2274.1 vs. uniprot
Match: A0A7Z0LXK5_9GAMM (GTP cyclohydrolase FolE2 n=1 Tax=Halomonas glaciei TaxID=186761 RepID=A0A7Z0LXK5_9GAMM) HSP 1 Score: 350 bits (899), Expect = 1.390e-119 Identity = 172/218 (78.90%), Postives = 194/218 (88.99%), Query Frame = 1
Query: 1 LKAFIASQEGLSQHAYLNVEGELPLKREALISPLAGWKSYPFSLRCQLSPAGFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTKSAVAAWLGSEEGILATPHSQRSSVECSLRLSESENGEWPLADSIENSIDRIERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDKALRQAPGVTGFQLKVVHAESLHAHDAVARSVWNW 654
L F+AS E LSQHAYL +GELPLKREALISPLAGWKSYPF+L CQ++PAGFQA++ L +GYSSTCPCSAALARQLIQQAF+EDF+EIPLTK+AV++WLGSEEGILATPHSQRS V C+LRL+E ++ + + + SIDRIE+ LGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDK LRQAPGVT F+LKVVHAESLHAHDAVARS WNW
Sbjct: 83 LNTFLASHEELSQHAYLTFKGELPLKREALISPLAGWKSYPFTLHCQVTPAGFQADIDLEIGYSSTCPCSAALARQLIQQAFDEDFAEIPLTKAAVSSWLGSEEGILATPHSQRSFVYCTLRLAEEDDNTLQIDELVARSIDRIEKTLGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDKTLRQAPGVTAFKLKVVHAESLHAHDAVARSEWNW 300
BLAST of mRNA_E-siliculosus-1a_F_contig13817.2274.1 vs. uniprot
Match: A0A3T1DZY2_9GAMM (Uncharacterized protein n=1 Tax=Halomonas olivaria TaxID=390919 RepID=A0A3T1DZY2_9GAMM) HSP 1 Score: 335 bits (860), Expect = 2.900e-115 Identity = 172/200 (86.00%), Postives = 182/200 (91.00%), Query Frame = 1
Query: 55 VEGELPLKREALISPLAGWKSYPFSLRCQLSPAGFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTKSAVAAWLGSEEGILATPHSQRSSVECSLRLSESENGEWPLADSIENSIDRIERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDKALRQAPGVTGFQLKVVHAESLHAHDAVARSVWNW 654
+EGELPLKREALISPL GWKSYPF+LRCQL+P G QAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLT+SAV+AWLGSEEGILATPHSQRS VEC+LRL+E E IE IDRIE+ALGTALQTAVKRIDEQAFALANGQNLMFCEDAARR+DKALRQAPGVTGFQLKVVHAESLHAH+AVA S WNW
Sbjct: 1 MEGELPLKREALISPLTGWKSYPFTLRCQLTPEGLQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTQSAVSAWLGSEEGILATPHSQRSFVECTLRLAEDEL-------PIERLIDRIEKALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRVDKALRQAPGVTGFQLKVVHAESLHAHNAVACSEWNW 193
BLAST of mRNA_E-siliculosus-1a_F_contig13817.2274.1 vs. uniprot
Match: A0A1R4I4C3_9GAMM (GTP cyclohydrolase FolE2 n=3 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A1R4I4C3_9GAMM) HSP 1 Score: 338 bits (866), Expect = 1.270e-114 Identity = 170/218 (77.98%), Postives = 185/218 (84.86%), Query Frame = 1
Query: 1 LKAFIASQEGLSQHAYLNVEGELPLKREALISPLAGWKSYPFSLRCQLSPAGFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTKSAVAAWLGSEEGILATPHSQRSSVECSLRLSESENGEWPLADSIENSIDRIERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDKALRQAPGVTGFQLKVVHAESLHAHDAVARSVWNW 654
L AF+ Q GLSQHAYL+VEG +PLKR ALISPLAGWK+YPFSL CQL+PAGFQA+L + +GYSSTCPCSAALARQLIQQAFEEDF EIPLT+SAV AWLGSEEGILATPHSQRS V CSLRLS PL E +IDR+E ALGTALQTAVKRIDEQAFALANGQNLMFCEDAA+R+D LR+ P V GFQLKVVHAESLHAH+AVARS W W
Sbjct: 83 LNAFVKGQGGLSQHAYLSVEGNMPLKRSALISPLAGWKNYPFSLHCQLTPAGFQAQLDIKIGYSSTCPCSAALARQLIQQAFEEDFEEIPLTRSAVLAWLGSEEGILATPHSQRSDVTCSLRLSPESGDTLPL----EATIDRVENALGTALQTAVKRIDEQAFALANGQNLMFCEDAAKRVDSTLRKMPWVAGFQLKVVHAESLHAHNAVARSEWQW 296
BLAST of mRNA_E-siliculosus-1a_F_contig13817.2274.1 vs. uniprot
Match: A0A6H1Y4H7_9GAMM (GTP cyclohydrolase FolE2 n=4 Tax=Halomonadaceae TaxID=28256 RepID=A0A6H1Y4H7_9GAMM) HSP 1 Score: 332 bits (852), Expect = 1.950e-112 Identity = 167/216 (77.31%), Postives = 188/216 (87.04%), Query Frame = 1
Query: 1 LKAFIASQEGLSQHAYLNVEGELPLKREALISPLAGWKSYPFSLRCQLSPAGFQAELGLTVGYSSTCPCSAALARQLIQQAFEEDFSEIPLTKSAVAAWLGSEEGILATPHSQRSSVECSLRLSESENGEWPLADSIENSIDRIERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDKALRQAPGVTGFQLKVVHAESLHAHDAVARSVW 648
L+ F+ASQEGLSQHAYL++ GELPL+R ALISPL+GWK YPF+LRC+LSP GFQ+ L L VGYSSTCPCSAALARQLIQQAFEEDF +IPL+KSAV AWLGSEEGILATPHSQRS + RL+ +++ + +EN IDR+ERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLD LRQAPGV+GF+LKVVHAESLHAHDAVA S W
Sbjct: 83 LERFLASQEGLSQHAYLSIAGELPLERAALISPLSGWKYYPFTLRCELSPDGFQSALDLEVGYSSTCPCSAALARQLIQQAFEEDFEDIPLSKSAVLAWLGSEEGILATPHSQRSVAHLTFRLATTDDAAISIETFMENMIDRVERALGTALQTAVKRIDEQAFALANGQNLMFCEDAARRLDTTLRQAPGVSGFRLKVVHAESLHAHDAVAYSEW 298 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13817.2274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig13817.2274.1 >prot_E-siliculosus-1a_F_contig13817.2274.1 ID=prot_E-siliculosus-1a_F_contig13817.2274.1|Name=mRNA_E-siliculosus-1a_F_contig13817.2274.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=219bp LKAFIASQEGLSQHAYLNVEGELPLKREALISPLAGWKSYPFSLRCQLSPback to top mRNA from alignment at E-siliculosus-1a_F_contig13817:574..1230- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig13817.2274.1 ID=mRNA_E-siliculosus-1a_F_contig13817.2274.1|Name=mRNA_E-siliculosus-1a_F_contig13817.2274.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=657bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13817:574..1230- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13817:574..1230- >mRNA_E-siliculosus-1a_F_contig13817.2274.1 ID=mRNA_E-siliculosus-1a_F_contig13817.2274.1|Name=mRNA_E-siliculosus-1a_F_contig13817.2274.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1314bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13817:574..1230- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |