mRNA_E-siliculosus-1a_F_contig137.2209.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig137.2209.1
Unique NamemRNA_E-siliculosus-1a_F_contig137.2209.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig137.2209.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 8.610e-66
Identity = 119/154 (77.27%), Postives = 131/154 (85.06%), Query Frame = 2
Query:   59 EGRTRCFDAFVVALSQACKGGKKRWYASTMELQLTWLDMCRACRSSSILHVRVNDQTPHSLWSSRTTQTRPNARSSKLRTSSRVPVVRALRLTWALSMEDLLRKAAVELWTSSQRLELRGSSCASSLGSEAAWPQGLTHLVLHTDSYIPTDNVW 520
            E RTRC DAFV+ALSQAC+GG+KRWYAST+ELQLT LD+CRACR++SILHV V+DQTP SLWSSRT QTRPN RS  L  SSRVPVVRALRLTWALSME LLRKAA+ELWT S+RLEL GSSC SSLGSE  WP+GLT LVL+TDS I    VW
Sbjct:    6 EWRTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGLTQLVLYTDSDIAMGTVW 159          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2209.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 7.780e-56
Identity = 101/154 (65.58%), Postives = 118/154 (76.62%), Query Frame = 2
Query:   50 MATEGRTRCFDAFVVALSQACKGGKKRWYASTMELQLTWLDMCRACRSSSILHVRVNDQTPHSLWSSRTTQTRPNARSSKLRTSSRVPVVRALRLTWALSMEDLLRKAAVELWTSSQRLELRGSSCASSLGSEAAWPQGLTHLVLHTDSYIPTD 511
            M TEG TR FDAF +ALSQAC+GG+KRWY ST ELQL  LD+CRACRS+  LHVRV   TP SLWS  T Q  PN +SSK+R  SRVPVVRALRLTWA SME L+++AA+ELW+ S+RLE+ G  CA+SLGS   WP GLT LVL TD +IP +
Sbjct:    1 MPTEGYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGS-VVWPLGLTQLVLDTDFHIPME 153          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2209.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.160e-30
Identity = 74/155 (47.74%), Postives = 100/155 (64.52%), Query Frame = 2
Query:   56 TEGRTRCFDAFVVALSQACKGGKKRWYASTMELQLTWLDMCRACRSSSILHVRVNDQTPHSLWSSRTTQTRPNARSSKLRTSSRVPVVRALRLTWALSMEDLLRKAAVELWTSSQRLELRGSSCASSLGSEAAWPQGLTHLVLHTDSYIPTDNVW 520
            TEG     D  +VAL+QAC G +KRWY ST+ELQL  L++C ACRS+ +LHV V + TP +LWSSRT++T P+ RS ++ TS+RVP V+AL  TWAL M+ L ++AA E    ++R    G S A+S+ S   WP+ L  LV      +P   VW
Sbjct:   83 TEGGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVES-VVWPESLKRLVF--SRRMPGKAVW 234          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2209.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 8.780e-30
Identity = 77/153 (50.33%), Postives = 96/153 (62.75%), Query Frame = 2
Query:   50 MATEGRTRCFDAFVVALSQACKGGKKRWYASTMELQLTWLDMCRACRSSSILHVRVNDQTPHSLWSSRTTQTRPNARSSKLRTSSRVPVVRALRLTWALSMEDLLRKAAVELWTSSQRLELRGSSCASSLGSEAAWPQGLTHLVLHTDSYIPT 508
            M T+G ++C DAFVVAL+QAC G +KRWY ST+ELQL  L++C ACR    LHVRV  QTP SLW      T  N RS K+  SSRVPVV+A  LTWAL M  L +++A E+ + S        S A+SL S A WPQ L  +V  +D  + T
Sbjct:    1 MTTKGNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLES-AVWPQRLKRMVFESDMTVNT 152          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2209.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.900e-29
Identity = 74/151 (49.01%), Postives = 97/151 (64.24%), Query Frame = 2
Query:   50 MATEGRTRCFDAFVVALSQACKGGKKRWYASTMELQLTWLDMCRACRSSSILHVRVNDQTPHSLWSSRTTQTRPNARSSKLRTSSRVPVVRALRLTWALSMEDLLRKAAVELWTSSQRLELRGSSCASSLGSEAAWPQGLTHLVLHTDSYI 502
            M +E + RC DAFVVALSQ  +GG+KRWY ST++LQL  L+ C ACRS+ +LHV V+ +TP +LWS    Q  P A      TS+RVP V+A+ LTWA   E  L  A+ ELWT  + L+L+ S C ++L S   WPQGL  LV+    +I
Sbjct:    1 MTSEAQRRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWS--LGQANPTAG-----TSTRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDS-VVWPQGLQRLVMDCTVFI 143          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2209.1 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 6.380e-28
Identity = 81/175 (46.29%), Postives = 97/175 (55.43%), Query Frame = 2
Query:   50 MATEGRTRCFDAFVVALSQACKGGKKRWYASTMELQLTWLDMCRACRSSSILHVRVNDQTPHSLWSSRTTQTRPNARSSKLRT----------------------------SSRVPVVRALRLTWALSMEDLLRKAAVELWTSSQRLELRGSSCASSLGSEAAWPQGLTHLVLHT 490
            M +EG +R FDA ++A+SQA +G  KRWY ST+EL+L  L+ CRACR    +HVRV+  TP SLWS     TR + RSSK R                             SSRVPV +AL LTWAL  E LL+  AVELWT  + L+LR S   S L S  AWPQ L  L L T
Sbjct:    1 MDSEGASRGFDALIIAISQAYEGRGKRWYTSTLELRLASLETCRACRRVPTIHVRVDANTPPSLWSPHAMPTRAHTRSSKTRAXXXXXXXXXXXXXXXXXXXXXXXXKARISSRVPVGQALGLTWALPTEILLQGVAVELWTKLEFLQLRESLSPSDLVS-VAWPQNLKRLALET 174          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2209.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.630e-27
Identity = 71/144 (49.31%), Postives = 90/144 (62.50%), Query Frame = 2
Query:   62 GRTRCFDAFVVALSQACKGGKKRWYASTMELQLTWLDMCRACRSSSILHVRVNDQTPHSLWSSRTTQTRPNARSSKLRTSSRVPVVRALRLTWALSMEDLLRKAAVELWTSSQRLELRGSSCASSLGSEAAWPQGLTHLVLHTD 493
            GR+ C  AF+VAL+Q C G +KRWYAST+ELQL  L+ C ACR    LHVRV+ QTP SLWS   +      RS +   S+RVP V+A  LTWAL ME LL+ +AVEL + S+   + G+S  +SLGS       L  LV  +D
Sbjct:   13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKRLVFDSD 156          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2209.1 vs. uniprot
Match: A0A6H5KVM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 5.580e-25
Identity = 58/86 (67.44%), Postives = 65/86 (75.58%), Query Frame = 2
Query:   62 GRTRCFDAFVVALSQACKGGKKRWYASTMELQLTWLDMCRACRSSSILHVRVNDQTPHSLWSSRTTQTRPNARSSKLRTSSRVPVV 319
            G T+CFDAFVVALSQAC+GG KR Y ST+EL L  LD+CRA RS+S LHVRV  QTP S WS    Q RP+  SSK+R SSRVPVV
Sbjct:   18 GPTQCFDAFVVALSQACEGGNKRSYTSTLELPLASLDICRAGRSTSTLHVRVQYQTPRSFWSPPKVQLRPDEGSSKIRLSSRVPVV 103          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2209.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.250e-23
Identity = 67/144 (46.53%), Postives = 87/144 (60.42%), Query Frame = 2
Query:   62 GRTRCFDAFVVALSQACKGGKKRWYASTMELQLTWLDMCRACRSSSILHVRVNDQTPHSLWSSRTTQTRPNARSSKLRTSSRVPVVRALRLTWALSMEDLLRKAAVELWTSSQRLELRGSSCASSLGSEAAWPQGLTHLVLHTD 493
            GR+ C DAF+VAL QA  G  KRWY ST+ELQL  L+ C ACRS+    V+++ QTPHSLWS R +      RS +    SRVP V+A    WAL ME LL ++A EL   S+  +  G S A+S G    W Q LT L+ +++
Sbjct:   25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPG-RMGWFQKLTRLMFYSE 167          
BLAST of mRNA_E-siliculosus-1a_F_contig137.2209.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 9.990e-19
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 2
Query:   65 RTRCFDAFVVALSQACKGGKKRWYASTMELQLTWLDMCRACRSSSILHVRVNDQTPHSLWSSRTTQTRPNARSSKL 292
            R++C DAFVVAL+Q C G +KRWYAST+ELQL  L+ C ACR    LHVRV+ +TP SLWS RTT    + RS K+
Sbjct:   38 RSKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSPRTTPITAHKRSRKV 113          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig137.2209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5LIJ3_9PHAE8.610e-6677.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7F9_ECTSI7.780e-5665.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTK8_ECTSI1.160e-3047.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNI6_9PHAE8.780e-3050.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1V9_9PHAE1.900e-2949.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXX4_9PHAE6.380e-2846.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLV1_9PHAE1.630e-2749.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVM8_9PHAE5.580e-2567.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8K9_9PHAE3.250e-2346.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0Z9_ECTSI9.990e-1959.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig137contigE-siliculosus-1a_F_contig137:20929..28097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1512
Model size1963
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig137.2209.1prot_E-siliculosus-1a_F_contig137.2209.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig137 20978..27695 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927885.6203325-UTR-E-siliculosus-1a_F_contig137:20928..209771622927885.6203325-UTR-E-siliculosus-1a_F_contig137:20928..20977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig137 20929..20977 +
1696318722.5362198-UTR-E-siliculosus-1a_F_contig137:20928..209771696318722.5362198-UTR-E-siliculosus-1a_F_contig137:20928..20977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig137 20929..20977 +
1622927885.6647372-UTR-E-siliculosus-1a_F_contig137:27695..280971622927885.6647372-UTR-E-siliculosus-1a_F_contig137:27695..28097Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig137 27696..28097 +
1696318722.5617023-UTR-E-siliculosus-1a_F_contig137:27695..280971696318722.5617023-UTR-E-siliculosus-1a_F_contig137:27695..28097Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig137 27696..28097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927885.6348104-CDS-E-siliculosus-1a_F_contig137:20977..209901622927885.6348104-CDS-E-siliculosus-1a_F_contig137:20977..20990Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig137 20978..20990 +
1696318722.5467122-CDS-E-siliculosus-1a_F_contig137:20977..209901696318722.5467122-CDS-E-siliculosus-1a_F_contig137:20977..20990Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig137 20978..20990 +
1622927885.6491308-CDS-E-siliculosus-1a_F_contig137:26196..276951622927885.6491308-CDS-E-siliculosus-1a_F_contig137:26196..27695Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig137 26197..27695 +
1696318722.5545595-CDS-E-siliculosus-1a_F_contig137:26196..276951696318722.5545595-CDS-E-siliculosus-1a_F_contig137:26196..27695Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig137 26197..27695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig137.2209.1

>prot_E-siliculosus-1a_F_contig137.2209.1 ID=prot_E-siliculosus-1a_F_contig137.2209.1|Name=mRNA_E-siliculosus-1a_F_contig137.2209.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=504bp
MATEGRTRCFDAFVVALSQACKGGKKRWYASTMELQLTWLDMCRACRSSS
ILHVRVNDQTPHSLWSSRTTQTRPNARSSKLRTSSRVPVVRALRLTWALS
MEDLLRKAAVELWTSSQRLELRGSSCASSLGSEAAWPQGLTHLVLHTDSY
IPTDNVWWPAHLQYLALRGRFNQPIAGVVWPASLKQLSFGTHYNQPIAGV
TWPSSLEHLWFGYYFNQPIAEVAWPSSLQKLSFGYEFNQPISGVVWPSSL
RQLSFGSNYNLPIAGVVWPSSLQQLSLGYSFDQPIAGVAWPSSLQRLSFG
LCFNQSIAGVAWPSSLQHLSFGSDFRQPIAGVVWPSSLQQLSFGAGFNQP
IAGVTWASSLQQLSFGYEFNQPMAGVVWPSSLQQLWFGHRFNQPIAGVVW
PSSLQKLSFGTTFNQPIAGVVWPSSLQKLSFGWSFNQPIAGVVWPSSLQQ
LSFGYCFNQPISGVVWPSSLQQLSFGSHFRQPVAGIVWPTSLRSVTQDGT
SVL*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig137:20929..28097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig137.2209.1 ID=mRNA_E-siliculosus-1a_F_contig137.2209.1|Name=mRNA_E-siliculosus-1a_F_contig137.2209.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7169bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig137:20929..28097+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACCAAGAACGGGAAGGGGGAGTGTGGCACTTGCTGGTGAAGGTTGACCGA TGGCTACTGAGGGTGAGATGGATCGGGCAGTACATGTTGAAAGGCATTAG AATGCAGGGCACAGCAGTGGGGCGTGCAGCGACAAAGCAGGCACGGGATG GGCGCTGCCGGTGTATTAGGTTGTAGACAACCAATGCTACAGCAGTAGTC TGTACTGCGGCACATGCATGTGTCGTATGGTTTCCACCCGCTTCGCCGCG GTCCACAGCCCTCCCAAGCATGGTTTATATATTTGTTTCCGCGCGTGCTG ACTGGCGCAGCCAAGTTTGTTGCCACGAGGTCTCGAATACCCCCACTCGG CAGATAGATGCAGTAGATGCAGCCTGTTGGCGGTTTTGCCAATTGCATGT AGGCTACGGTACCCAATTCTTGTTTACATTCAATGTGCTAGGAGTCCAAA ACATCCGAGACGACCTTCCGTCCTGCGGAGTCCCCACCTCGGCACATGTA CTATCCCCTGCAGAGGACACAATGGAGCAGCGGCATGCGCGTTTGGCACG CCCAGATGTGTTGCTGAGGCCTTGCGGTCGAAGGCTGCAGCCTCTGCCTG AAAACAGTTCCGCACATCTGGGTCCATGCCATTCACGATCCACGGCTTGC TCCACGCGTCACTAACCCAACCCCCGGAACTTCGCCCTTTCGTTTGAGAC GGAAGCATTCCCAGCACCAGTGGATAGTACGGCACAAGCCTTCCCTCCGG TGTGGGGGAAAGAGAGCACCGCGGCAGGGGGTGAAGCATGAAAATGCAGA AAGTAAACAAACACAGATACATCAAGGGGGGGTTGTGACGCTGGCTGTTT TTCCCACACTTTAATCCTATACAGCGAAAGAAAACAACCTTCCCGCCAGG GTGTCGCATTCTATTGTCATCAGTAGAGGACACCATGACGAGGCGTCCTG AGTGCTGGCACGTTCAGGTTTGCTACTGGAGCTGAAATATCGAAAGTCGC AGCAGCCCCTGAAAACAGTCCGAAATCTGCGCCGGAACCAAGCGGCATCC AACATTTGTCACAGCCGTGCTCACCGACACGGGCCGTAAACTCCTGAGCT GCGGGTTTGCAGCATTAGCTGGCGGCCCATGAGCTACTGCTGTAAGCCCG CAGTTCAAGAGATTGGGGTCAGTGGCGGCGAGCACGGCTGTGACAAATGT TGGATGCCGCTTGGTTCCGGCGCAGATTTCGGGCTGCTTTCAGAGGCTGC TGCGACCTTCGATGTTTCAGCTCCAGTAGCAAACCTGAACGTGCCAGCAT GCACGACGCCCCTTCATGGTGTCCTCTACTGATGACAATAGAATGCGACA CCAAACCCTCAAATTGACCTTGCTTGAGCGCCTCCCGTTTCGGCTCTTTT GACTAGAAATTAGAATGGTGTGAATTTTTATCTTGATTTCAACGGAGGCA TGTGAAGGTAGACGCGTGAAAATGTACGTTTTGAGCAGCCTCTACTGCCG CCCTGTGCGAGAATCAACGATTGCCGTGTTTCGCGGTGCCTTCCTGCTGG TCTGGTGTGTCGGTTGTTTTCAAAGTTAGTCAACATAGGAGTCCAAAATA TCCCAAACGACCTTCCGGCGGGTGGCGTCCCGACCCTGGGGACATTCTCC AGTACAGAACGCGCCACCTCCCGCATCCTATTTTGATGTCGACCAAGTGT CGACTGAGTTTGAAAGAAGCTACAAGAGCACCAGACACTGCACACGAGAC ACGCAAGACCAGTCGGAAGGCATCGGGACAAACAGAAATGGTTGATTCTC GCACTGGGCGGCAGTAGAGGCTGCTCGAAACATACATATCATGAGTCTAC CTCCACACACCACCTTTGAAATCAAAACAAAAATTATATATATGCACACT AGTCTATATTCAAGTCGCAGGAGCCAAAACGACAGACGCTCAAAGAAGGC CAGTTTAGCAATCTAGCGGCATCTTCTATCAGTAGACGACACCGTGAAGA GGCGTCGTGTGTGCTGGCACGTTCACGTTTGCTTCCTGGGTGGTGATATC GAGGATCGCTAATGGCCTGTTTGTAAATGCCGATGTTGTGTGAACTCCAG AGTTCAAAGAGTGTTGTTAACCGCATGTATTAGATCGTAGGGTCGACATC GGAGAGGAAGAGGAGGAGAAAGGAGGAGTACCAGGCCAAACCAGTCGAAA GGGGGGCCCGCAACTCCTATCCCAAAGTTTCTCCTAGCATGTCTCTCAAT GTTATTCCCATCTACGATATACGAAACCGCCAGTATCGGTACAATCCGAC CAATCTACTTCCTCTCACGAACACCCTCCCTTGGTTATTCACGCCAGTGA CTAACCATCCGTACGTCAAAAAATAATCCGAAAAGCACCGAAAACAACGC AAATCGAAAACAAGGGGAAACCCGCCATCGGATCGAAACCCATCCGAAAC TCAACGCCTCCACGCCGTTCATATCACGAAAGATTCCAACGGCCGTACTG CAACATCAAGGCAGGACACTGTCATATTACCGCCCTCACGGCTCGCTCTA CACGTCCACGCGCGGGTGACTTGACAAGATCCAACCTTGCGCAGCACAAA AACCAAATGGACCACGTCCCCACCCCACCCCTTGGCGAGGCCGTACGACA AACTTGGCCAAATACCCACTATCAAGCTCCTGACACCTGCTGTCTGCATT CCAAATGAAAACACTGATAATCTACGCCTAATTCCCTCCCTTGCGCAACA ACCTGCCTAGTAGTTGGGGACGACTTCATATGCCCTCTCTAGTGTACCAT TCAACGAGCGATCTCTGCGCTCTCCCTGGGTAGGCGCTTTTCCTTTAGTC ACTACTGTACCTAGAACAAAGGCGACCCCGATGAGATTCAAACTCCGGGG ATATCTTTATTTCGTTAAATGGTCTTATCCACCAGACTACTCAGTCAGCT GACTGCCCTAGAAGTACATACACACGGCAATCATCCAAAATTCGCTGAAA AAGAAAACAACCAAACACATGATACAGCATGCCTCGGACGTGGAAATACG ACCAATACCTTCACCGGAAGAGTCAGTCCGACAGCATCCGAGAGTCCAAC AACGCCCGCCGTATTGAAATTACAAATACCTGCTAGACCGAAATAGTTCC ACGTCAAGCATGAAACTGCATCTGAACGTCTGAATGCTACCGCCTCCGCA ATCTTTCTTTCCGGTGAGACTGCACCTTTGTCGAAGCAACACAAAAGCAC GTTGCATTGTTGCATCAAGAGTGGACGACCATGAACCTGTCCAGTTGCAG AATGTCTCCAGACCGGTCGTGAACTCTCCAAGCATCAAACTTTCCGAAAC AACCACGCACGTCCGTCACCCTCCCTTATTCTGCAACCATACAGGTACGC AGAAACAAGTGCCGTGAAGCTCAAGCATGTGGACGGTGGGAACATTTCGC CCTCGCATCCCTCACACAGCAACAACCAGCGATTTCTTCAAACCTTAGAA AGCGCCCCTCCTGCGACTTTTCCGTGAAAGGCAATCGCCCGTCGTTGCAT GACTCCACACGCAAGAAATACAAATAAATTCCATAAATTCCAGTACCAAC CAGAGTTGAAGCTTTGTGCCCACGGAATCCACTGCGCAGCTCCAGGATTA AATTGCCGGCAGAATCCACCGTGCAGCTGGTACCCTTTTCGCTTCCCCTC CCCACCCGCCCACACCCGATGTCCCTCGGTGTTGCAGCGTGGCGAAAAGG CATTGGTAACCCACAAAGGCGGGTTCTTTGTACCACGTGGGAACTGAGCA TCTGTTCTTATGGCCAAGTTCTTATGTTTTGCTTTTTTTTAGGCTCCAGT TAACTGCTGAGTTCTTAAGTGGTGGAGCGTTCTGCAGAGGACTCCATGGA GCGGCCGCATGCGCGTTGGAATGCCCAAGTCTACTGCTGGGGTCGGGTTG TCGAAGGGTGCAGCTGCGAAAACACCCCACGACTGGGTCCATACCACGAT CCACTGCTTGCTGTTCGCGCCACAACCCCAACCCCTCTCTTCACACTTTT GTTTTTGGTAGGGGCGTTCTCAGTGTACATAACGGTATTCCCTCTCTCGA ATACGTACTCTGAGCACTCTTGTTGAAAGTTTTTCCCAAAGAGGCGGACA TCTGTGTGGCCACCAATGTGAGTTGATCGACGTTCTGAAGGTGAATTCGG TTGAGGTTGGATAAGAAAGTCCGTAACATGAAAACGAATACGAAAGCGGG AAAGAAAAGGAGACAGCAGTTCAACTTAGGGTTCGAACCCCTGACGACGT TACCCACATCCGACGTTCGCACATGATATTACCGCAATTTTTTGTTGGAC AGGATTTGGGTGGAAAAACGGTATTTCATTCGGATTCACAGCGGGAAAAT ATCTGCGCAGAAATCACAAATTTCCGAGAACAGTCGTGATGAAAATGTCG TGGATATTAGTTAATAGAAACGATGATAGGGTACACGCGTGTGCTGCATT CTGAGAGAGGGAGACTAGAGACTATTCTGACAGGTGGAAGCGTGCACCTA GCCCTTGGCCGGGCTAGAAACAACACGAACGAAGCGGCATACAAGGCCTA GCGAACACATGTCACACGTAAAGAGAAATACGAGAAAGAGCCGTACTGAA GCGCTTGGCGGATTGATTGCTGACGAACTTTGGGGGTAAAAATATGAGAG GGAGGATGTGTTTCGGTTCTTCGCATGGGCGAGATCTACAAATACGACAA ACAACGACGGACGCCTTCTCAAACACTGACACAAGCTTGTGCACCTGAGA TGCAGCAGGGGCGGACGGGGCCAGGACGGTCACCTCTTCCAACCCACAGG GAAATCTTTCGATGGAATCTCGAGAAACATCGAACGAAGAGAACCAACTT GCTTTTAGAGAAGAAACTGGATATCGCCAACTCTAAAACAAGAGTGAAAA CAGAAGGGTGGGATCGATTTCGGGTCTGGAAAAGTGGGGTCAAAATCGAA CATAGATCAGAGAATTTCCGCGAATGACACTCAAGCCTATTGGGCTTCAG AACTACCCACAATGTTTCGATGCCTGTGCTGCTTCGGATCCATTTGCCGT GGACTTGTTCCCGGGAACAACCGAGGCGTTTTGGTAACACACGGGAACAG GGCAGCCGTTCCCGTCTCATGTTTGCCCCTGTCCCTGATCGAGATCGCCC GTTGTGGTATCAACACGAGGTTATTTATCCCTACATCTGCTGAAAAATCG TTCGGTCATTGTTGCTAGGGCGCACCCGGTGCTTCGATGCCTTCGTCGTC GCCTTGAGCCAAGCGTGCAAGGGAGGGAAGAAGCGCTGGTATGCGTCGAC GATGGAGCTGCAGCTGACCTGGCTGGACATGTGCCGGGCGTGCCGAAGTT CGTCGATCTTGCACGTGCGTGTAAATGACCAGACTCCTCACAGCTTGTGG TCTTCTCGCACAACACAGACCCGGCCGAACGCTCGCAGCTCGAAGCTCCG TACCTCGAGCCGTGTACCGGTCGTGCGGGCTCTTCGTTTGACGTGGGCCC TGTCTATGGAAGATCTGCTGAGGAAAGCCGCCGTCGAGTTGTGGACGTCG TCACAACGTCTTGAGCTGCGGGGATCGTCGTGTGCGTCTAGCTTAGGATC AGAAGCGGCTTGGCCCCAAGGGCTGACACATCTGGTATTGCACACAGATT CGTATATTCCAACAGATAACGTGTGGTGGCCGGCACACTTGCAGTATCTG GCACTTCGGGGTAGATTCAATCAGCCTATTGCCGGAGTGGTATGGCCGGC GTCCCTGAAACAACTATCTTTCGGGACCCATTACAATCAACCTATTGCTG GAGTCACGTGGCCGTCCTCTCTGGAGCACCTATGGTTCGGGTACTACTTC AATCAGCCTATTGCTGAAGTCGCGTGGCCGTCCTCCCTGCAAAAGCTATC GTTCGGGTACGAGTTCAATCAGCCTATTTCCGGAGTCGTATGGCCGTCCT CGCTGCGCCAGCTATCGTTCGGGAGCAACTACAACCTGCCTATTGCCGGA GTCGTGTGGCCGTCCTCCCTGCAACAGTTGTCATTGGGGTACAGCTTCGA TCAGCCTATCGCCGGAGTTGCGTGGCCGTCCTCCTTGCAGCGGCTATCGT TCGGGTTATGTTTCAATCAGTCAATCGCCGGAGTCGCGTGGCCGTCCTCA CTGCAGCACCTATCGTTCGGGTCCGATTTCAGACAGCCTATTGCCGGAGT AGTGTGGCCGTCCTCCCTGCAACAGTTATCGTTCGGGGCAGGATTCAATC AGCCTATTGCCGGAGTCACATGGGCGTCTTCCCTGCAACAGCTATCATTC GGGTACGAATTCAATCAGCCAATGGCGGGAGTCGTGTGGCCGTCCTCTCT GCAGCAACTTTGGTTCGGGCACCGCTTCAATCAGCCTATTGCCGGAGTCG TGTGGCCGTCCTCCCTCCAGAAACTATCGTTCGGGACCACCTTCAATCAG CCTATCGCCGGTGTCGTGTGGCCGTCCTCCCTGCAGAAACTGTCGTTCGG GTGGAGCTTCAATCAGCCTATCGCCGGCGTCGTTTGGCCGTCCTCCCTGC AACAGCTATCGTTCGGGTACTGCTTCAATCAGCCTATTTCCGGAGTCGTG TGGCCGTCCTCCCTCCAGCAGCTATCGTTCGGGTCACACTTCCGTCAGCC TGTTGCCGGAATCGTGTGGCCAACTTCGCTGCGATCTGTGACTCAAGATG GAACAAGCGTGTTGTAAATGCTTCAGGGATCATTAGAGATGATTGCGCGG TTTCGTTCAGCTTGTTTTGGAACGATGTCGTGTTCGTACCGATGCTACAG TCCAAGCGCAGCACATGTTTTCAGCACTCAAGAGTATGGACGTAATCAAA TGAGGGAGAGCTGTTTCATATCCATATGCACGAAAGACTTACTTCGAATG TTACCTCAGGCTCATCAAATCATCATGGCAACTGTGCAATCCTTGTCGGG TGTACATAGTAGCCGTCTTCCTGGTACAAGGTAATGGTGAAGGTTGGGGA ATGTCGGTAGGGGATTCTTCTGTCCCTGTGAACCACATTTGAATGGTTCT TGTTGCAAGTCGTCAAATGTCCATTCAGACTCTAATTGATACGTCGAGCA AGATATGGGTGAAGAACCG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig137:20929..28097+

>mRNA_E-siliculosus-1a_F_contig137.2209.1 ID=mRNA_E-siliculosus-1a_F_contig137.2209.1|Name=mRNA_E-siliculosus-1a_F_contig137.2209.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3024bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig137:20929..28097+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTACTGAGGATGGCTACTGAGGGGCGCACCCGGTGCTTCGATGCCT
TCGTCGTCGCCTTGAGCCAAGCGTGCAAGGGAGGGAAGAAGCGCTGGTAT
GCGTCGACGATGGAGCTGCAGCTGACCTGGCTGGACATGTGCCGGGCGTG
CCGAAGTTCGTCGATCTTGCACGTGCGTGTAAATGACCAGACTCCTCACA
GCTTGTGGTCTTCTCGCACAACACAGACCCGGCCGAACGCTCGCAGCTCG
AAGCTCCGTACCTCGAGCCGTGTACCGGTCGTGCGGGCTCTTCGTTTGAC
GTGGGCCCTGTCTATGGAAGATCTGCTGAGGAAAGCCGCCGTCGAGTTGT
GGACGTCGTCACAACGTCTTGAGCTGCGGGGATCGTCGTGTGCGTCTAGC
TTAGGATCAGAAGCGGCTTGGCCCCAAGGGCTGACACATCTGGTATTGCA
CACAGATTCGTATATTCCAACAGATAACGTGTGGTGGCCGGCACACTTGC
AGTATCTGGCACTTCGGGGTAGATTCAATCAGCCTATTGCCGGAGTGGTA
TGGCCGGCGTCCCTGAAACAACTATCTTTCGGGACCCATTACAATCAACC
TATTGCTGGAGTCACGTGGCCGTCCTCTCTGGAGCACCTATGGTTCGGGT
ACTACTTCAATCAGCCTATTGCTGAAGTCGCGTGGCCGTCCTCCCTGCAA
AAGCTATCGTTCGGGTACGAGTTCAATCAGCCTATTTCCGGAGTCGTATG
GCCGTCCTCGCTGCGCCAGCTATCGTTCGGGAGCAACTACAACCTGCCTA
TTGCCGGAGTCGTGTGGCCGTCCTCCCTGCAACAGTTGTCATTGGGGTAC
AGCTTCGATCAGCCTATCGCCGGAGTTGCGTGGCCGTCCTCCTTGCAGCG
GCTATCGTTCGGGTTATGTTTCAATCAGTCAATCGCCGGAGTCGCGTGGC
CGTCCTCACTGCAGCACCTATCGTTCGGGTCCGATTTCAGACAGCCTATT
GCCGGAGTAGTGTGGCCGTCCTCCCTGCAACAGTTATCGTTCGGGGCAGG
ATTCAATCAGCCTATTGCCGGAGTCACATGGGCGTCTTCCCTGCAACAGC
TATCATTCGGGTACGAATTCAATCAGCCAATGGCGGGAGTCGTGTGGCCG
TCCTCTCTGCAGCAACTTTGGTTCGGGCACCGCTTCAATCAGCCTATTGC
CGGAGTCGTGTGGCCGTCCTCCCTCCAGAAACTATCGTTCGGGACCACCT
TCAATCAGCCTATCGCCGGTGTCGTGTGGCCGTCCTCCCTGCAGAAACTG
TCGTTCGGGTGGAGCTTCAATCAGCCTATCGCCGGCGTCGTTTGGCCGTC
CTCCCTGCAACAGCTATCGTTCGGGTACTGCTTCAATCAGCCTATTTCCG
GAGTCGTGTGGCCGTCCTCCCTCCAGCAGCTATCGTTCGGGTCACACTTC
CGTCAGCCTGTTGCCGGAATCGTGTGGCCAACTTCGCTGCGATCTGTGAC
TCAAGATGGAACAAGCGTGTTGTAAGGCGCACCCGGTGCTTCGATGCCTT
CGTCGTCGCCTTGAGCCAAGCGTGCAAGGGAGGGAAGAAGCGCTGGTATG
CGTCGACGATGGAGCTGCAGCTGACCTGGCTGGACATGTGCCGGGCGTGC
CGAAGTTCGTCGATCTTGCACGTGCGTGTAAATGACCAGACTCCTCACAG
CTTGTGGTCTTCTCGCACAACACAGACCCGGCCGAACGCTCGCAGCTCGA
AGCTCCGTACCTCGAGCCGTGTACCGGTCGTGCGGGCTCTTCGTTTGACG
TGGGCCCTGTCTATGGAAGATCTGCTGAGGAAAGCCGCCGTCGAGTTGTG
GACGTCGTCACAACGTCTTGAGCTGCGGGGATCGTCGTGTGCGTCTAGCT
TAGGATCAGAAGCGGCTTGGCCCCAAGGGCTGACACATCTGGTATTGCAC
ACAGATTCGTATATTCCAACAGATAACGTGTGGTGGCCGGCACACTTGCA
GTATCTGGCACTTCGGGGTAGATTCAATCAGCCTATTGCCGGAGTGGTAT
GGCCGGCGTCCCTGAAACAACTATCTTTCGGGACCCATTACAATCAACCT
ATTGCTGGAGTCACGTGGCCGTCCTCTCTGGAGCACCTATGGTTCGGGTA
CTACTTCAATCAGCCTATTGCTGAAGTCGCGTGGCCGTCCTCCCTGCAAA
AGCTATCGTTCGGGTACGAGTTCAATCAGCCTATTTCCGGAGTCGTATGG
CCGTCCTCGCTGCGCCAGCTATCGTTCGGGAGCAACTACAACCTGCCTAT
TGCCGGAGTCGTGTGGCCGTCCTCCCTGCAACAGTTGTCATTGGGGTACA
GCTTCGATCAGCCTATCGCCGGAGTTGCGTGGCCGTCCTCCTTGCAGCGG
CTATCGTTCGGGTTATGTTTCAATCAGTCAATCGCCGGAGTCGCGTGGCC
GTCCTCACTGCAGCACCTATCGTTCGGGTCCGATTTCAGACAGCCTATTG
CCGGAGTAGTGTGGCCGTCCTCCCTGCAACAGTTATCGTTCGGGGCAGGA
TTCAATCAGCCTATTGCCGGAGTCACATGGGCGTCTTCCCTGCAACAGCT
ATCATTCGGGTACGAATTCAATCAGCCAATGGCGGGAGTCGTGTGGCCGT
CCTCTCTGCAGCAACTTTGGTTCGGGCACCGCTTCAATCAGCCTATTGCC
GGAGTCGTGTGGCCGTCCTCCCTCCAGAAACTATCGTTCGGGACCACCTT
CAATCAGCCTATCGCCGGTGTCGTGTGGCCGTCCTCCCTGCAGAAACTGT
CGTTCGGGTGGAGCTTCAATCAGCCTATCGCCGGCGTCGTTTGGCCGTCC
TCCCTGCAACAGCTATCGTTCGGGTACTGCTTCAATCAGCCTATTTCCGG
AGTCGTGTGGCCGTCCTCCCTCCAGCAGCTATCGTTCGGGTCACACTTCC
GTCAGCCTGTTGCCGGAATCGTGTGGCCAACTTCGCTGCGATCTGTGACT
CAAGATGGAACAAGCGTGTTGTAA
back to top