mRNA_E-siliculosus-1a_F_contig13644.2178.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13644.2178.1
Unique NamemRNA_E-siliculosus-1a_F_contig13644.2178.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 4.810e-85
Identity = 113/120 (94.17%), Postives = 119/120 (99.17%), Query Frame = 3
Query:    3 VCSYKGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLYPTGRGQDLLVKECDTR 362
            VCSY+GEEFPGDSEGPVHCHGFVWPENASDDFIKYLALD+AFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANL+GSDFMACSKNDLRRAYK+LYPTGRG+DLLVK+CD R
Sbjct:   82 VCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELYPTGRGRDLLVKKCDNR 201          
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 3.990e-84
Identity = 113/120 (94.17%), Postives = 119/120 (99.17%), Query Frame = 3
Query:    3 VCSYKGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLYPTGRGQDLLVKECDTR 362
            VCSY+GEEFPGDSEGPVHCHGFVWPENASDDFIKYLALD+AFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANL+GSDFMACSKNDLRRAYK+LYPTGRG+DLLVK+CD R
Sbjct:  146 VCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELYPTGRGRDLLVKKCDNR 265          
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D8LHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 1.790e-47
Identity = 68/104 (65.38%), Postives = 84/104 (80.77%), Query Frame = 3
Query:    3 VCSYKGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLY 314
            V  Y   EFPG+SEG VHCHG VWPE +SD++I YLALD+A+ +HV+EK Y G+IPGAPVC CLE MPEVSR+DC+QYR A+L GSDFMAC KNDLR  ++ ++
Sbjct:   19 VYRYGSTEFPGESEGDVHCHGLVWPEGSSDEYIIYLALDVAYNHHVEEKGYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGSDFMACPKNDLRPIWRPIH 122          
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.260e-33
Identity = 61/112 (54.46%), Postives = 75/112 (66.96%), Query Frame = 3
Query:   24 EFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLYPTGRGQDLLVKECDT 359
            E+PG+SEG VHCHGFVWPE+A+D +I  LA  +   +H D + Y GNI GAP+C C+EEMP+VS ADCT Y         F AC+KNDLR  Y++ YP G   D LV ECD 
Sbjct:  330 EYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEYPMGE-LDNLVGECDN 440          
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.350e-33
Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 3
Query:   24 EFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLYPTGRGQDLLVKECDT 359
            E+PG+SEG VHCHGFVWPE+A+D +I  LA  +   +H D + Y GNI GAP+C C+EEMP+VS ADCT Y         F AC+ NDLR  Y++ YP G   D LV ECD 
Sbjct:  373 EYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGE-LDNLVGECDN 483          
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 4.230e-33
Identity = 61/112 (54.46%), Postives = 73/112 (65.18%), Query Frame = 3
Query:   24 EFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLYPTGRGQDLLVKECDT 359
            EFPGDSEG VHCHGFVWPE+A+D +I  L+  +   +H D + Y GNI GAP+C C+EEMP VS ADCT Y         F AC+KNDLR  Y+  YPTG   +L V  CD 
Sbjct:  359 EFPGDSEGEVHCHGFVWPEDATDKYIHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLRTRYEAEYPTGELANL-VDTCDN 469          
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 2.970e-32
Identity = 58/113 (51.33%), Postives = 69/113 (61.06%), Query Frame = 3
Query:   24 EFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLYPTGRGQDLLVKECDTR 362
            E+PGDSEG VHCHG VWPE+A+D +I  LA  +   +H+  K Y GNI GAP+C C E+MPEVS+ADCT Y            C  NDLR  Y  LYP G   D LV  CD +
Sbjct:  307 EYPGDSEGDVHCHGIVWPEDATDKYIHLLAQYVQTFDHIGNKGYYGNIEGAPMCGCAEDMPEVSKADCTNYSPTEEDEDRIRGCDPNDLRTRYDVLYPDG-DLDNLVGRCDNQ 418          
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: A0A6H5JSN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.550e-22
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 3
Query:    3 VCSYKGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGN--IPGAPVCHC 191
            VC Y+  EFPG+SEG VHCHG+VWPE +SDD+I+YLALD+A+INHV+EK Y G    P   V  C
Sbjct:   19 VCRYESTEFPGESEGDVHCHGWVWPEGSSDDYIEYLALDVAYINHVEEKGYFGQRVCPAFRVLRC 83          
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.700e-19
Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 3
Query:    3 VCSYKGE--EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDIAFINHVDEKA-YTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLY--PTGRGQDLLVKECDT 359
            VCS   E  E PGDSEGPV+CHGF WPE A  ++ I  L   +  I   +E+  Y GN+ GAP C C+EEMP+VS A+C+++     S      C +  L   Y      P G  +  LV+ CD 
Sbjct:   62 VCSVPSEGLEMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRF-----SIDGIGECGEGGLYSQYNGRLDAPYGEMEHNLVRSCDN 181          
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: A0A7S1YUI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YUI1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.120e-17
Identity = 45/127 (35.43%), Postives = 69/127 (54.33%), Query Frame = 3
Query:   27 FPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFIN---HVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRK----------------ANLSGS--DFMAC-----SKNDLRRAYKQLYPTGRG 329
            F G+ EGP+HCHGF W +++ +D  +Y   ++ +++   H+ ++ Y  N+PGAP+C CLE+MP VSR+DCT+  +                A L     DF AC     + N+L   YK+L   GR 
Sbjct:   65 FEGNGEGPIHCHGFAWGQDSFEDAARYKGNNLFYVSMYDHMHQRGYVRNVPGAPMCGCLEKMPIVSRSDCTEIAETASWTFQWSADHDRFTARLDEVEVDFNACQGVNNNNNNLEAYYKRLVEEGRA 191          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8D2_ECTSI4.810e-8594.17Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G8C5_ECTSI3.990e-8494.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHS4_ECTSI1.790e-4765.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2N2_ECTSI1.260e-3354.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2N0_ECTSI1.350e-3353.57Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7FT55_ECTSI4.230e-3354.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT54_ECTSI2.970e-3251.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JSN0_9PHAE2.550e-2261.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT53_ECTSI2.700e-1940.80Imm downregulated 17 n=1 Tax=Ectocarpus siliculosu... [more]
A0A7S1YUI1_9STRA1.120e-1735.43Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13644contigE-siliculosus-1a_F_contig13644:293..959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size432
Model size432
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927881.4304702-CDS-E-siliculosus-1a_F_contig13644:292..5611622927881.4304702-CDS-E-siliculosus-1a_F_contig13644:292..561Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13644 293..561 -
1696318720.8631806-CDS-E-siliculosus-1a_F_contig13644:292..5611696318720.8631806-CDS-E-siliculosus-1a_F_contig13644:292..561Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13644 293..561 -
1622927881.4485006-CDS-E-siliculosus-1a_F_contig13644:796..9591622927881.4485006-CDS-E-siliculosus-1a_F_contig13644:796..959Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13644 797..959 -
1696318720.8705835-CDS-E-siliculosus-1a_F_contig13644:796..9591696318720.8705835-CDS-E-siliculosus-1a_F_contig13644:796..959Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13644 797..959 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13644.2178.1prot_E-siliculosus-1a_F_contig13644.2178.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13644 293..959 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13644.2178.1

>prot_E-siliculosus-1a_F_contig13644.2178.1 ID=prot_E-siliculosus-1a_F_contig13644.2178.1|Name=mRNA_E-siliculosus-1a_F_contig13644.2178.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=144bp
MSVATRAKSSPGIPKGLCTATGLCGLRTRATTSSNIWRWISLSSTTWTRR
PTPETFRGLQCATAWKRCQRYLGPIAPSTGKLTCPEATSWRARKTISDAR
TNSCTRLVAAKTYSSKSVTPVKICRFIGSSGLTWCETKCSAACS
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mRNA from alignment at E-siliculosus-1a_F_contig13644:293..959-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13644.2178.1 ID=mRNA_E-siliculosus-1a_F_contig13644.2178.1|Name=mRNA_E-siliculosus-1a_F_contig13644.2178.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=667bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13644:293..959- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTGTAGCTACAAGGGCGAAGAGTTCCCCGGGGATTCCGAAGGGCCT GTGCACTGCCACGGGTTTGTGTGGCCTGAGAACGCGAGCGACGACTTCAT CAAATATTTGGCGCTGGATATCGCTTTCATCAACCACGTGGACGAGAAGG CCTACACCGGAAAGTGAGTCTGCGCAGTTTCTGTTTATGAGTGTTATGAT GCGTCGGGTTGACTACATTGAACATAAATACTTGCACTAGCAAACAGCAG GTAGGTGCGTGTTGCCAAGTCTGCTTCAATCGTTCGATATCCAATACAGT CCAACCACATGCGCCGTCCCTTCTGCGATACCCACACATACATCTTGTTG CCCCCCCGCCCGCCTCCCGCCATGTTTGCAAATTTTTCTCCAACCCAGCA TTCCGGGGGCTCCAGTGTGCCACTGCTTGGAAGAGATGCCAGAGGTATCT CGGGCCGATTGCACCCAGTACAGGAAAGCTAACCTGTCCGGAAGCGACTT CATGGCGTGCTCGAAAAACGATCTCAGACGCGCGTACAAACAGCTGTACC CGACTGGTCGCGGCCAAGACCTACTCGTCAAAGAGTGTGACACCCGTTAA GATATGTAGGTTCATTGGGTCTTCTGGCTTGACGTGGTGCGAGACTAAGT GTTCGGCTGCTTGTTCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13644:293..959-

>mRNA_E-siliculosus-1a_F_contig13644.2178.1 ID=mRNA_E-siliculosus-1a_F_contig13644.2178.1|Name=mRNA_E-siliculosus-1a_F_contig13644.2178.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13644:293..959- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTGTAGCTACAAGGGCGAAGAGTTCCCCGGGGATTCCGAAGGGCCT
GTGCACTGCCACGGGTTTGTGTGGCCTGAGAACGCGAGCGACGACTTCAT
CAAATATTTGGCGCTGGATATCGCTTTCATCAACCACGTGGACGAGAAGG
CCTACACCGGAAAATGTCTGTAGCTACAAGGGCGAAGAGTTCCCCGGGGA
TTCCGAAGGGCCTGTGCACTGCCACGGGTTTGTGTGGCCTGAGAACGCGA
GCGACGACTTCATCAAATATTTGGCGCTGGATATCGCTTTCATCAACCAC
GTGGACGAGAAGGCCTACACCGGAAACATTCCGGGGGCTCCAGTGTGCCA
CTGCTTGGAAGAGATGCCAGAGGTATCTCGGGCCGATTGCACCCAGTACA
GGAAAGCTAACCTGTCCGGAAGCGACTTCATGGCGTGCTCGAAAAACGAT
CTCAGACGCGCGTACAAACAGCTGTACCCGACTGGTCGCGGCCAAGACCT
ACTCGTCAAAGAGTGTGACACCCGTTAAGATATGTAGGTTCATTGGGTCT
TCTGGCTTGACGTGGTGCGAGACTAAGTGTTCGGCTGCTTGTTCCCATTC
CGGGGGCTCCAGTGTGCCACTGCTTGGAAGAGATGCCAGAGGTATCTCGG
GCCGATTGCACCCAGTACAGGAAAGCTAACCTGTCCGGAAGCGACTTCAT
GGCGTGCTCGAAAAACGATCTCAGACGCGCGTACAAACAGCTGTACCCGA
CTGGTCGCGGCCAAGACCTACTCGTCAAAGAGTGTGACACCCGTTAAGAT
ATGTAGGTTCATTGGGTCTTCTGGCTTGACGTGGTGCGAGACTAAGTGTT
CGGCTGCTTGTTCC
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