mRNA_E-siliculosus-1a_F_contig1361.2161.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A6H5JLC1_9PHAE (Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC1_9PHAE) HSP 1 Score: 851 bits (2198), Expect = 3.070e-302 Identity = 489/549 (89.07%), Postives = 492/549 (89.62%), Query Frame = 2
Query: 101 MRVLLPDGEEKGNNPSFAPVATATPGNDDDAAGLGPSPQQHLPVSPRADLPPQPHPRAPSREAAADVLRRRTNGKQRPTTVAEPSKDNIALEGNVDDGRDVSTANAAQGFRPAARTSACDAAAGFSPSGAGGAGGASGSRIEPRGGLSQEAAAVATENDIESAFEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVSEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFPGESPTFFKGGRGMHSSFGEGFGESDLRATEEELEQAAITASLADFRGTTGXXXXXXXGKSDGAAFSVPRRGGRGSGGRFIGRGAASRVSGGREEXXXGGAAAWASGAGSPAGRVERGEWMSSGXXXXXXXXXXXXXXXXXXXXXPGEGSRKASPNSADGSTSSAVREMVWSYGFPLARVIAAHDLVGESVEDMLVLLTSDAFQPPENGDRR 1747
MRVLLPDGEEKGN+PSFAPVATATPGNDDDAAGLGPSPQ HLPVSP AD PPQPHPRAPSREAAADVLR RTNGKQRPT VAEPSKDNIALE NVDDGRDVSTANAAQGFRPAARTSA DAA FS SGA GSRIEPRGGLSQEAAAVATEND+E AFEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVSEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVF GESPTFFKGGRG H SFGEGFGESDLRATEEELEQAAITASLADFRGTTGXXXXXXX KSDGAAFSVPRRGGRGSGGRFIGRGAASRVSG XXX XXXXXXXXXXXXXXXXX PGEGSRKASPNSADGSTSSAVREMVWSYGFPLARV+AAHDLVGESVEDMLVLLTSD FQPPENGDRR
Sbjct: 1 MRVLLPDGEEKGNDPSFAPVATATPGNDDDAAGLGPSPQ-HLPVSPHADQPPQPHPRAPSREAAADVLRPRTNGKQRPTNVAEPSKDNIALEANVDDGRDVSTANAAQGFRPAARTSARDAADRFSSSGAXXXXXXXGSRIEPRGGLSQEAAAVATENDMEEAFEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVSEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFSGESPTFFKGGRGTHGSFGEGFGESDLRATEEELEQAAITASLADFRGTTGXXXXXXXXKSDGAAFSVPRRGGRGSGGRFIGRGAASRVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGSPPGEGSRKASPNSADGSTSSAVREMVWSYGFPLARVVAAHDLVGESVEDMLVLLTSDGFQPPENGDRR 548
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: D7G475_ECTSI (Deubiquitinating enzyme A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G475_ECTSI) HSP 1 Score: 598 bits (1543), Expect = 3.050e-206 Identity = 323/351 (92.02%), Postives = 325/351 (92.59%), Query Frame = 2
Query: 695 MHGDIRRQCLDFMRKERDHYSQFVSEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFPGESPTFFKGGRGMHSSFGEGFGESDLRATEEELEQAAITASLADFRGTTGXXXXXXXGKSDGAAFSVPRRGGRGSGGRFIGRGAASRVSGGREEXXXGGAAAWASGAGSPAGRVERGEWMSSGXXXXXXXXXXXXXXXXXXXXXPGEGSRKASPNSADGSTSSAVREMVWSYGFPLARVIAAHDLVGESVEDMLVLLTSDAFQPPENGDRR 1747
MHGDIRRQCLDFMRKERDHYSQFVSEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFPG SPTFFKGGRGMH SFGEGFGESD+RATEEELEQAAITASL+DFRGTT GKSDGAAFSVPRRGGRGSGGRFIGRGAASRVSGGRE XXX GAAAWASGAGSPAGRVERG WMSSG XXX XXXXX PGEGSRKASPNSADGSTSSAVREMVWSYGFPLARVIAAHDLVGESVEDMLVLLTSDAFQPPENGDRR
Sbjct: 1 MHGDIRRQCLDFMRKERDHYSQFVSEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFPGASPTFFKGGRGMHGSFGEGFGESDVRATEEELEQAAITASLSDFRGTTSGGGSSNNGKSDGAAFSVPRRGGRGSGGRFIGRGAASRVSGGREXXXXXGAAAWASGAGSPAGRVERGGWMSSGGXXXEGXXXXXSRKRRRPGSPPGEGSRKASPNSADGSTSSAVREMVWSYGFPLARVIAAHDLVGESVEDMLVLLTSDAFQPPENGDRR 351
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A1E7F9N9_9STRA (Deubiquitinating enzyme A (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F9N9_9STRA) HSP 1 Score: 230 bits (587), Expect = 1.390e-64 Identity = 115/232 (49.57%), Postives = 155/232 (66.81%), Query Frame = 2
Query: 590 FEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVS-EAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVF---------PGESPTFFKGGR--GMHSSFGEGFGESDLRATEEELEQAAITASLADF 1249
F LK +G ++R Q+GDGNCLFRAIS Q+YGDP MHGD+R+QC+D M +++H+SQFV+ E F YV+R +DGVHGNNPE+QA SELFNRPIEV+ PE G++P+NIFH Y++G+ PIR+SYH GNHYNA++DP + G GLG+PGL A+K + +A+AES ++A + E K + H + SD+ AT ELEQAA+ SL +
Sbjct: 5 FRMALKKRGLEIREQDGDGNCLFRAISLQVYGDPNMHGDVRKQCMDHMEHDQEHFSQFVTGEPFLQYVARTRQDGVHGNNPEIQACSELFNRPIEVFTPENGSSPLNIFHAEYKNGDVPIRLSYHDGNHYNAVIDPLMPTAGLGLGLPGLKPGLADKMQMAKAVAESDAAADQMELQQVMKTSEDDEIQRAIKESKLSAEHKNSNAALSLSDMDATYFELEQAALERSLQSY 236
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A7S1ZCV0_TRICV (Deubiquitinating enzyme A n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZCV0_TRICV) HSP 1 Score: 227 bits (579), Expect = 1.130e-61 Identity = 114/243 (46.91%), Postives = 154/243 (63.37%), Query Frame = 2
Query: 590 FEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVS-EAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGL------------SKEAAEKESLKR---------ALAESCSSAHHVFPGESPTFFKGGRGMHSSFGEGFGESDLRATEEELEQAAITASLADFR 1252
FE LK +G +LR Q+GDGNCLFRA+S Q+YGDP MHG++R++CLDFM K+ H++ F++ E F Y+ RK +DGVHGNNPE+QA SELFNRP+EV+VPE G P+NIFH Y++ + PIR+SYH GNHYNA+VDP + + G GLG+PGL +KE +E E + R A+ ES +S + ++ SDL AT+ ELEQA + +SL +R
Sbjct: 157 FEEALKGRGLELREQDGDGNCLFRAVSLQVYGDPNMHGEVRKRCLDFMAKDEAHFAHFITDEPFRDYIRRKRRDGVHGNNPEIQAISELFNRPVEVFVPENGPNPLNIFHAEYKTSDVPIRLSYHDGNHYNAVVDPLKPTAGLGLGLPGLDPGLADRLQMEKAKEESEAEQIARETHRADVVRAMKESAASTDRMLKQKAMAL-----------------SDLEATDLELEQAVLQSSLESYR 382
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A7S2K5T8_9STRA (Deubiquitinating enzyme A n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K5T8_9STRA) HSP 1 Score: 219 bits (557), Expect = 2.220e-59 Identity = 101/177 (57.06%), Postives = 136/177 (76.84%), Query Frame = 2
Query: 584 SAFEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFV-SEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKG-TAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHV 1108
+AFE LK + +L+ EGDGNCLFRA+S Q+YGD MH ++RR+C+DFM+ E +H+++F+ E F+ Y+ RK +DGVHGNNPE+QA SEL+NRP+EVYVP+ G APINIFH Y++ +AP+R+SYH GNHYNAI+DP + G GLG+PGL A+K +K+ALAES S +HV
Sbjct: 148 NAFETSLKRRNLELQLVEGDGNCLFRAVSLQVYGDTNMHNEVRRRCMDFMQGESEHFAKFIPDENFEHYIHRKRRDGVHGNNPEIQAISELYNRPVEVYVPDNGGKAPINIFHAEYKTADAPVRLSYHDGNHYNAIIDPYMPTAGLGLGLPGLKPGLADKMQMKKALAESDS--NHV 322
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A7S0GHB3_9STRA (Deubiquitinating enzyme A n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHB3_9STRA) HSP 1 Score: 214 bits (544), Expect = 2.340e-59 Identity = 97/167 (58.08%), Postives = 125/167 (74.85%), Query Frame = 2
Query: 590 FEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVS-EAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAES 1087
FE ELK G +L QEGDGNCLFRA+S Q++GD H ++RR+CLDFM++E HYSQFV+ E F Y+ RK ++GVHGNNPE+QA SEL+NRP+EVYVPE G P+NIFH Y + + PIR+SYH GNHYNA++DP + G GLG+PGL A+ +K+A+ ES
Sbjct: 70 FEKELKKNGLELVIQEGDGNCLFRAVSLQVFGDSNNHTEVRRRCLDFMKREEAHYSQFVTGEQFCDYIERKSRNGVHGNNPEIQAISELYNRPVEVYVPENGPKPLNIFHKEYTTSDVPIRLSYHDGNHYNAVIDPYRPTAGLGLGLPGLQPGLADDMQMKKAVNES 236
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A7S0CHZ9_9STRA (Deubiquitinating enzyme A n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CHZ9_9STRA) HSP 1 Score: 214 bits (544), Expect = 1.220e-57 Identity = 97/167 (58.08%), Postives = 125/167 (74.85%), Query Frame = 2
Query: 590 FEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVS-EAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAES 1087
FE ELK G +L QEGDGNCLFRA+S Q++GD H ++RR+CLDFM++E HYSQFV+ E F Y+ RK ++GVHGNNPE+QA SEL+NRP+EVYVPE G P+NIFH Y + + PIR+SYH GNHYNA++DP + G GLG+PGL A+ +K+A+ ES
Sbjct: 70 FEKELKKNGLELVIQEGDGNCLFRAVSLQVFGDSNNHTEVRRRCLDFMKREEAHYSQFVTGEQFCDYIERKSRNGVHGNNPEIQAISELYNRPVEVYVPENGPKPLNIFHKEYTTSDVPIRLSYHDGNHYNAVIDPYRPTAGLGLGLPGLQPGLADDMQMKKAVNES 236
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A7S4MQ37_9STRA (Deubiquitinating enzyme A n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MQ37_9STRA) HSP 1 Score: 218 bits (556), Expect = 1.010e-56 Identity = 108/238 (45.38%), Postives = 151/238 (63.45%), Query Frame = 2
Query: 572 NDIESAFEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVS-EAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFPGESPTFFKGGRGMHSSFG----------EGFGESDLRATEEELEQAAITASLADFR 1252
+ ++ FE LK +G ++ QEGDGNCLFRA+S Q+YGD H ++RR+CLDFM ++ HYSQF++ E F Y+ RK DG+HGNNPE+QA SEL+NRP+EV+VP+ G PINIFH Y++ +APIR+SYH GNHYNA+VDP + G GLG+PGL A++ L+RA ES + + R + S + SD+ AT+ ELE+A + +S+ +R
Sbjct: 361 SSCQTDFEEALKKRGLEMAEQEGDGNCLFRAVSLQVYGDANNHREVRRRCLDFMARDEPHYSQFITDEPFREYIKRKRVDGIHGNNPEIQAISELYNRPVEVFVPDSGAKPINIFHAEYKTADAPIRLSYHDGNHYNAVVDPLLPTAGLGLGLPGLEPGLADRLQLERAKEES----QIELDAAEASRIEMSRALEESRASEVARMYDKQKALAMSDMEATDYELERAVLESSMESYR 594
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A7S2XJX5_9STRA (Deubiquitinating enzyme A n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJX5_9STRA) HSP 1 Score: 216 bits (550), Expect = 4.620e-56 Identity = 114/245 (46.53%), Postives = 152/245 (62.04%), Query Frame = 2
Query: 590 FEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQF-VSEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGL----------------SKEAAEKESLKRALAESCSSAHHVFPGESPTFFKGGRGMHSSFG-------EGFGESDLRATEEELEQAAITASLADFR 1252
FEA L+ +G +L Q+GDGNCLFRA+S Q+YGD GMHGD+R+ CLDFM K+ H+SQF V E F Y+ RK ++G+HGNNPE+QA SELFNRP+EV+VPE G PINIFH Y++ + PIR+SYH GNHYNA++DP + G GLG+PGL S E A+K ++A+ ES ES M S+ + SDL AT+ E+E+A + +SL ++
Sbjct: 330 FEAALQKRGLELVEQDGDGNCLFRAVSLQVYGDAGMHGDVRKSCLDFMAKDEAHFSQFLVDENFWDYICRKRENGIHGNNPEIQAISELFNRPVEVFVPENGAEPINIFHEEYKTADVPIRLSYHDGNHYNAVIDPLCPTAGLGLGLPGLEPGLADRLQVEKAKRESDELADKARFEKAMEESHRELMQKAIKESA--------MESTMSVDHMYKKKTLQMSDLEATDYEMEKAVLASSLESYQ 566
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A7S2S8I2_9STRA (Deubiquitinating enzyme A n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S8I2_9STRA) HSP 1 Score: 206 bits (525), Expect = 3.200e-55 Identity = 107/234 (45.73%), Postives = 146/234 (62.39%), Query Frame = 2
Query: 590 FEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFV-SEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFPG------------ESPTFFKGGRGMHSSFGEGFGESDLRATEEELEQAAITASLADFR 1252
F+ LK +G ++ Q+GDGNCLFRA+S QIYGD MH +IR +CLD+M +E H+SQFV E F Y++RK +GVH NNPE+QA SELFNRP+EVYVP G PINIFH Y++ + PIR+SYH GNHYNA+++P + G GLG+PGL A+K +++A+ ES ES + ++ H + SDL AT+ E+EQA + SL ++
Sbjct: 52 FKESLKKRGLEMVEQDGDGNCLFRAVSLQIYGDSNMHVEIRNRCLDYMAREEAHFSQFVVGEPFREYLTRKRINGVHANNPEIQAISELFNRPVEVYVPSNGAKPINIFHSEYKTADIPIRLSYHDGNHYNAVINPLCPTAGLGLGLPGLEPGLADKLQMQKAVEESDEXXXXXXXXXXXXXXXXRALDESRSDYQQKFMKHKALA----LSDLEATDYEIEQAVLQKSLESYK 281 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1361.2161.1 >prot_E-siliculosus-1a_F_contig1361.2161.1 ID=prot_E-siliculosus-1a_F_contig1361.2161.1|Name=mRNA_E-siliculosus-1a_F_contig1361.2161.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=550bp MRVLLPDGEEKGNNPSFAPVATATPGNDDDAAGLGPSPQQHLPVSPRADLback to top mRNA from alignment at E-siliculosus-1a_F_contig1361:21556..28199+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1361.2161.1 ID=mRNA_E-siliculosus-1a_F_contig1361.2161.1|Name=mRNA_E-siliculosus-1a_F_contig1361.2161.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6644bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1361:21556..28199+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1361:21556..28199+ >mRNA_E-siliculosus-1a_F_contig1361.2161.1 ID=mRNA_E-siliculosus-1a_F_contig1361.2161.1|Name=mRNA_E-siliculosus-1a_F_contig1361.2161.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3300bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1361:21556..28199+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |