mRNA_E-siliculosus-1a_F_contig1361.2161.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1361.2161.1
Unique NamemRNA_E-siliculosus-1a_F_contig1361.2161.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A6H5JLC1_9PHAE (Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC1_9PHAE)

HSP 1 Score: 851 bits (2198), Expect = 3.070e-302
Identity = 489/549 (89.07%), Postives = 492/549 (89.62%), Query Frame = 2
Query:  101 MRVLLPDGEEKGNNPSFAPVATATPGNDDDAAGLGPSPQQHLPVSPRADLPPQPHPRAPSREAAADVLRRRTNGKQRPTTVAEPSKDNIALEGNVDDGRDVSTANAAQGFRPAARTSACDAAAGFSPSGAGGAGGASGSRIEPRGGLSQEAAAVATENDIESAFEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVSEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFPGESPTFFKGGRGMHSSFGEGFGESDLRATEEELEQAAITASLADFRGTTGXXXXXXXGKSDGAAFSVPRRGGRGSGGRFIGRGAASRVSGGREEXXXGGAAAWASGAGSPAGRVERGEWMSSGXXXXXXXXXXXXXXXXXXXXXPGEGSRKASPNSADGSTSSAVREMVWSYGFPLARVIAAHDLVGESVEDMLVLLTSDAFQPPENGDRR 1747
            MRVLLPDGEEKGN+PSFAPVATATPGNDDDAAGLGPSPQ HLPVSP AD PPQPHPRAPSREAAADVLR RTNGKQRPT VAEPSKDNIALE NVDDGRDVSTANAAQGFRPAARTSA DAA  FS SGA       GSRIEPRGGLSQEAAAVATEND+E AFEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVSEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVF GESPTFFKGGRG H SFGEGFGESDLRATEEELEQAAITASLADFRGTTGXXXXXXX KSDGAAFSVPRRGGRGSGGRFIGRGAASRVSG    XXX                          XXXXXXXXXXXXXXXXX    PGEGSRKASPNSADGSTSSAVREMVWSYGFPLARV+AAHDLVGESVEDMLVLLTSD FQPPENGDRR
Sbjct:    1 MRVLLPDGEEKGNDPSFAPVATATPGNDDDAAGLGPSPQ-HLPVSPHADQPPQPHPRAPSREAAADVLRPRTNGKQRPTNVAEPSKDNIALEANVDDGRDVSTANAAQGFRPAARTSARDAADRFSSSGAXXXXXXXGSRIEPRGGLSQEAAAVATENDMEEAFEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVSEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFSGESPTFFKGGRGTHGSFGEGFGESDLRATEEELEQAAITASLADFRGTTGXXXXXXXXKSDGAAFSVPRRGGRGSGGRFIGRGAASRVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGSPPGEGSRKASPNSADGSTSSAVREMVWSYGFPLARVVAAHDLVGESVEDMLVLLTSDGFQPPENGDRR 548          
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: D7G475_ECTSI (Deubiquitinating enzyme A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G475_ECTSI)

HSP 1 Score: 598 bits (1543), Expect = 3.050e-206
Identity = 323/351 (92.02%), Postives = 325/351 (92.59%), Query Frame = 2
Query:  695 MHGDIRRQCLDFMRKERDHYSQFVSEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFPGESPTFFKGGRGMHSSFGEGFGESDLRATEEELEQAAITASLADFRGTTGXXXXXXXGKSDGAAFSVPRRGGRGSGGRFIGRGAASRVSGGREEXXXGGAAAWASGAGSPAGRVERGEWMSSGXXXXXXXXXXXXXXXXXXXXXPGEGSRKASPNSADGSTSSAVREMVWSYGFPLARVIAAHDLVGESVEDMLVLLTSDAFQPPENGDRR 1747
            MHGDIRRQCLDFMRKERDHYSQFVSEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFPG SPTFFKGGRGMH SFGEGFGESD+RATEEELEQAAITASL+DFRGTT        GKSDGAAFSVPRRGGRGSGGRFIGRGAASRVSGGRE XXX GAAAWASGAGSPAGRVERG WMSSG XXX  XXXXX          PGEGSRKASPNSADGSTSSAVREMVWSYGFPLARVIAAHDLVGESVEDMLVLLTSDAFQPPENGDRR
Sbjct:    1 MHGDIRRQCLDFMRKERDHYSQFVSEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFPGASPTFFKGGRGMHGSFGEGFGESDVRATEEELEQAAITASLSDFRGTTSGGGSSNNGKSDGAAFSVPRRGGRGSGGRFIGRGAASRVSGGREXXXXXGAAAWASGAGSPAGRVERGGWMSSGGXXXEGXXXXXSRKRRRPGSPPGEGSRKASPNSADGSTSSAVREMVWSYGFPLARVIAAHDLVGESVEDMLVLLTSDAFQPPENGDRR 351          
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A1E7F9N9_9STRA (Deubiquitinating enzyme A (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F9N9_9STRA)

HSP 1 Score: 230 bits (587), Expect = 1.390e-64
Identity = 115/232 (49.57%), Postives = 155/232 (66.81%), Query Frame = 2
Query:  590 FEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVS-EAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVF---------PGESPTFFKGGR--GMHSSFGEGFGESDLRATEEELEQAAITASLADF 1249
            F   LK +G ++R Q+GDGNCLFRAIS Q+YGDP MHGD+R+QC+D M  +++H+SQFV+ E F  YV+R  +DGVHGNNPE+QA SELFNRPIEV+ PE G++P+NIFH  Y++G+ PIR+SYH GNHYNA++DP   + G GLG+PGL    A+K  + +A+AES ++A  +            E     K  +    H +       SD+ AT  ELEQAA+  SL  +
Sbjct:    5 FRMALKKRGLEIREQDGDGNCLFRAISLQVYGDPNMHGDVRKQCMDHMEHDQEHFSQFVTGEPFLQYVARTRQDGVHGNNPEIQACSELFNRPIEVFTPENGSSPLNIFHAEYKNGDVPIRLSYHDGNHYNAVIDPLMPTAGLGLGLPGLKPGLADKMQMAKAVAESDAAADQMELQQVMKTSEDDEIQRAIKESKLSAEHKNSNAALSLSDMDATYFELEQAALERSLQSY 236          
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A7S1ZCV0_TRICV (Deubiquitinating enzyme A n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZCV0_TRICV)

HSP 1 Score: 227 bits (579), Expect = 1.130e-61
Identity = 114/243 (46.91%), Postives = 154/243 (63.37%), Query Frame = 2
Query:  590 FEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVS-EAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGL------------SKEAAEKESLKR---------ALAESCSSAHHVFPGESPTFFKGGRGMHSSFGEGFGESDLRATEEELEQAAITASLADFR 1252
            FE  LK +G +LR Q+GDGNCLFRA+S Q+YGDP MHG++R++CLDFM K+  H++ F++ E F  Y+ RK +DGVHGNNPE+QA SELFNRP+EV+VPE G  P+NIFH  Y++ + PIR+SYH GNHYNA+VDP + + G GLG+PGL            +KE +E E + R         A+ ES +S   +   ++                    SDL AT+ ELEQA + +SL  +R
Sbjct:  157 FEEALKGRGLELREQDGDGNCLFRAVSLQVYGDPNMHGEVRKRCLDFMAKDEAHFAHFITDEPFRDYIRRKRRDGVHGNNPEIQAISELFNRPVEVFVPENGPNPLNIFHAEYKTSDVPIRLSYHDGNHYNAVVDPLKPTAGLGLGLPGLDPGLADRLQMEKAKEESEAEQIARETHRADVVRAMKESAASTDRMLKQKAMAL-----------------SDLEATDLELEQAVLQSSLESYR 382          
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A7S2K5T8_9STRA (Deubiquitinating enzyme A n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K5T8_9STRA)

HSP 1 Score: 219 bits (557), Expect = 2.220e-59
Identity = 101/177 (57.06%), Postives = 136/177 (76.84%), Query Frame = 2
Query:  584 SAFEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFV-SEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKG-TAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHV 1108
            +AFE  LK +  +L+  EGDGNCLFRA+S Q+YGD  MH ++RR+C+DFM+ E +H+++F+  E F+ Y+ RK +DGVHGNNPE+QA SEL+NRP+EVYVP+ G  APINIFH  Y++ +AP+R+SYH GNHYNAI+DP   + G GLG+PGL    A+K  +K+ALAES S  +HV
Sbjct:  148 NAFETSLKRRNLELQLVEGDGNCLFRAVSLQVYGDTNMHNEVRRRCMDFMQGESEHFAKFIPDENFEHYIHRKRRDGVHGNNPEIQAISELYNRPVEVYVPDNGGKAPINIFHAEYKTADAPVRLSYHDGNHYNAIIDPYMPTAGLGLGLPGLKPGLADKMQMKKALAESDS--NHV 322          
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A7S0GHB3_9STRA (Deubiquitinating enzyme A n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHB3_9STRA)

HSP 1 Score: 214 bits (544), Expect = 2.340e-59
Identity = 97/167 (58.08%), Postives = 125/167 (74.85%), Query Frame = 2
Query:  590 FEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVS-EAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAES 1087
            FE ELK  G +L  QEGDGNCLFRA+S Q++GD   H ++RR+CLDFM++E  HYSQFV+ E F  Y+ RK ++GVHGNNPE+QA SEL+NRP+EVYVPE G  P+NIFH  Y + + PIR+SYH GNHYNA++DP   + G GLG+PGL    A+   +K+A+ ES
Sbjct:   70 FEKELKKNGLELVIQEGDGNCLFRAVSLQVFGDSNNHTEVRRRCLDFMKREEAHYSQFVTGEQFCDYIERKSRNGVHGNNPEIQAISELYNRPVEVYVPENGPKPLNIFHKEYTTSDVPIRLSYHDGNHYNAVIDPYRPTAGLGLGLPGLQPGLADDMQMKKAVNES 236          
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A7S0CHZ9_9STRA (Deubiquitinating enzyme A n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CHZ9_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.220e-57
Identity = 97/167 (58.08%), Postives = 125/167 (74.85%), Query Frame = 2
Query:  590 FEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVS-EAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAES 1087
            FE ELK  G +L  QEGDGNCLFRA+S Q++GD   H ++RR+CLDFM++E  HYSQFV+ E F  Y+ RK ++GVHGNNPE+QA SEL+NRP+EVYVPE G  P+NIFH  Y + + PIR+SYH GNHYNA++DP   + G GLG+PGL    A+   +K+A+ ES
Sbjct:   70 FEKELKKNGLELVIQEGDGNCLFRAVSLQVFGDSNNHTEVRRRCLDFMKREEAHYSQFVTGEQFCDYIERKSRNGVHGNNPEIQAISELYNRPVEVYVPENGPKPLNIFHKEYTTSDVPIRLSYHDGNHYNAVIDPYRPTAGLGLGLPGLQPGLADDMQMKKAVNES 236          
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A7S4MQ37_9STRA (Deubiquitinating enzyme A n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MQ37_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.010e-56
Identity = 108/238 (45.38%), Postives = 151/238 (63.45%), Query Frame = 2
Query:  572 NDIESAFEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFVS-EAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFPGESPTFFKGGRGMHSSFG----------EGFGESDLRATEEELEQAAITASLADFR 1252
            +  ++ FE  LK +G ++  QEGDGNCLFRA+S Q+YGD   H ++RR+CLDFM ++  HYSQF++ E F  Y+ RK  DG+HGNNPE+QA SEL+NRP+EV+VP+ G  PINIFH  Y++ +APIR+SYH GNHYNA+VDP   + G GLG+PGL    A++  L+RA  ES             +  +  R +  S            +    SD+ AT+ ELE+A + +S+  +R
Sbjct:  361 SSCQTDFEEALKKRGLEMAEQEGDGNCLFRAVSLQVYGDANNHREVRRRCLDFMARDEPHYSQFITDEPFREYIKRKRVDGIHGNNPEIQAISELYNRPVEVFVPDSGAKPINIFHAEYKTADAPIRLSYHDGNHYNAVVDPLLPTAGLGLGLPGLEPGLADRLQLERAKEES----QIELDAAEASRIEMSRALEESRASEVARMYDKQKALAMSDMEATDYELERAVLESSMESYR 594          
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A7S2XJX5_9STRA (Deubiquitinating enzyme A n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJX5_9STRA)

HSP 1 Score: 216 bits (550), Expect = 4.620e-56
Identity = 114/245 (46.53%), Postives = 152/245 (62.04%), Query Frame = 2
Query:  590 FEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQF-VSEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGL----------------SKEAAEKESLKRALAESCSSAHHVFPGESPTFFKGGRGMHSSFG-------EGFGESDLRATEEELEQAAITASLADFR 1252
            FEA L+ +G +L  Q+GDGNCLFRA+S Q+YGD GMHGD+R+ CLDFM K+  H+SQF V E F  Y+ RK ++G+HGNNPE+QA SELFNRP+EV+VPE G  PINIFH  Y++ + PIR+SYH GNHYNA++DP   + G GLG+PGL                S E A+K   ++A+ ES          ES         M S+         +    SDL AT+ E+E+A + +SL  ++
Sbjct:  330 FEAALQKRGLELVEQDGDGNCLFRAVSLQVYGDAGMHGDVRKSCLDFMAKDEAHFSQFLVDENFWDYICRKRENGIHGNNPEIQAISELFNRPVEVFVPENGAEPINIFHEEYKTADVPIRLSYHDGNHYNAVIDPLCPTAGLGLGLPGLEPGLADRLQVEKAKRESDELADKARFEKAMEESHRELMQKAIKESA--------MESTMSVDHMYKKKTLQMSDLEATDYEMEKAVLASSLESYQ 566          
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Match: A0A7S2S8I2_9STRA (Deubiquitinating enzyme A n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S8I2_9STRA)

HSP 1 Score: 206 bits (525), Expect = 3.200e-55
Identity = 107/234 (45.73%), Postives = 146/234 (62.39%), Query Frame = 2
Query:  590 FEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMHGDIRRQCLDFMRKERDHYSQFV-SEAFDSYVSRKEKDGVHGNNPEMQAASELFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFPG------------ESPTFFKGGRGMHSSFGEGFGESDLRATEEELEQAAITASLADFR 1252
            F+  LK +G ++  Q+GDGNCLFRA+S QIYGD  MH +IR +CLD+M +E  H+SQFV  E F  Y++RK  +GVH NNPE+QA SELFNRP+EVYVP  G  PINIFH  Y++ + PIR+SYH GNHYNA+++P   + G GLG+PGL    A+K  +++A+ ES                      ES + ++     H +       SDL AT+ E+EQA +  SL  ++
Sbjct:   52 FKESLKKRGLEMVEQDGDGNCLFRAVSLQIYGDSNMHVEIRNRCLDYMAREEAHFSQFVVGEPFREYLTRKRINGVHANNPEIQAISELFNRPVEVYVPSNGAKPINIFHSEYKTADIPIRLSYHDGNHYNAVINPLCPTAGLGLGLPGLEPGLADKLQMQKAVEESDEXXXXXXXXXXXXXXXXRALDESRSDYQQKFMKHKALA----LSDLEATDYEIEQAVLQKSLESYK 281          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1361.2161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLC1_9PHAE3.070e-30289.07Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. C... [more]
D7G475_ECTSI3.050e-20692.02Deubiquitinating enzyme A n=1 Tax=Ectocarpus silic... [more]
A0A1E7F9N9_9STRA1.390e-6449.57Deubiquitinating enzyme A (Fragment) n=1 Tax=Fragi... [more]
A0A7S1ZCV0_TRICV1.130e-6146.91Deubiquitinating enzyme A n=1 Tax=Trieres chinensi... [more]
A0A7S2K5T8_9STRA2.220e-5957.06Deubiquitinating enzyme A n=1 Tax=Leptocylindrus d... [more]
A0A7S0GHB3_9STRA2.340e-5958.08Deubiquitinating enzyme A n=1 Tax=Proboscia inermi... [more]
A0A7S0CHZ9_9STRA1.220e-5758.08Deubiquitinating enzyme A n=2 Tax=Proboscia inermi... [more]
A0A7S4MQ37_9STRA1.010e-5645.38Deubiquitinating enzyme A n=1 Tax=Odontella aurita... [more]
A0A7S2XJX5_9STRA4.620e-5646.53Deubiquitinating enzyme A n=1 Tax=Attheya septentr... [more]
A0A7S2S8I2_9STRA3.200e-5545.73Deubiquitinating enzyme A n=1 Tax=Eucampia antarct... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1361contigE-siliculosus-1a_F_contig1361:21556..28199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1650
Model size2663
Exons8
Ec32 orthologEc-02_001560.1
Ec32 ortholog descriptionOvarian tumour, otubain
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03019,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EC3.4.19.12
EggNOG OGsKOG2605@1,KOG2605@2759
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
GOsGO:0000003,GO:0001775,GO:0001816,GO:0001817,GO:0001818,GO:0002237,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002286,GO:0002287,GO:0002292,GO:0002293,GO:0002294,GO:0002295,GO:0002360,GO:0002363,GO:0002366,GO:0002376,GO:0002460,GO:0002520,GO:0002521,GO:0002682,GO:0002790,GO:0002791,GO:0002792,GO:0002819,GO:0002822,GO:0003006,GO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006955,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009306,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009987,GO:0010033,GO:0010498,GO:0015031,GO:0015833,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0030097,GO:0030098,GO:0030154,GO:0030163,GO:0030217,GO:0031647,GO:0032479,GO:0032480,GO:0032496,GO:0032501,GO:0032502,GO:0032504,GO:0032625,GO:0032638,GO:0032660,GO:0032700,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0033993,GO:0035710,GO:0036037,GO:0036211,GO:0036459,GO:0042093,GO:0042110,GO:0042221,GO:0042886,GO:0043161,GO:0043170,GO:0043207,GO:0043367,GO:0043368,GO:0043369,GO:0043373,GO:0043374,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045058,GO:0045165,GO:0045184,GO:0045321,GO:0046631,GO:0046632,GO:0046649,GO:0046903,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050663,GO:0050707,GO:0050708,GO:0050709,GO:0050710,GO:0050776,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051179,GO:0051223,GO:0051224,GO:0051234,GO:0051239,GO:0051241,GO:0051603,GO:0051704,GO:0051707,GO:0061578,GO:0065007,GO:0065008,GO:0070011,GO:0070201,GO:0070536,GO:0070646,GO:0070647,GO:0071108,GO:0071702,GO:0071704,GO:0071705,GO:0072538,GO:0072539,GO:0072540,GO:0072607,GO:0072619,GO:0090087,GO:0101005,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1903530,GO:1903531,GO:1904950,GO:1905076,GO:1905077,GO:1990380,GO:2000316
KEGG ModuleM00395
KEGG Pathwayko03018,ko04622,map03018,map04622
KEGG koko:K12611,ko:K12655
Preferred nameOTUD5
Seed eggNOG ortholog2880.D7G475
Seed ortholog evalue2.4e-170
Seed ortholog score605.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1361.2161.1prot_E-siliculosus-1a_F_contig1361.2161.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1361 21656..27286 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927878.5232224-UTR-E-siliculosus-1a_F_contig1361:21555..216551622927878.5232224-UTR-E-siliculosus-1a_F_contig1361:21555..21655Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1361 21556..21655 +
1696318719.6635976-UTR-E-siliculosus-1a_F_contig1361:21555..216551696318719.6635976-UTR-E-siliculosus-1a_F_contig1361:21555..21655Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1361 21556..21655 +
1622927878.6171587-UTR-E-siliculosus-1a_F_contig1361:27286..281991622927878.6171587-UTR-E-siliculosus-1a_F_contig1361:27286..28199Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1361 27287..28199 +
1696318719.7555811-UTR-E-siliculosus-1a_F_contig1361:27286..281991696318719.7555811-UTR-E-siliculosus-1a_F_contig1361:27286..28199Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1361 27287..28199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927878.5347087-CDS-E-siliculosus-1a_F_contig1361:21655..220201622927878.5347087-CDS-E-siliculosus-1a_F_contig1361:21655..22020Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 21656..22020 +
1696318719.677444-CDS-E-siliculosus-1a_F_contig1361:21655..220201696318719.677444-CDS-E-siliculosus-1a_F_contig1361:21655..22020Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 21656..22020 +
1622927878.5443966-CDS-E-siliculosus-1a_F_contig1361:23151..232811622927878.5443966-CDS-E-siliculosus-1a_F_contig1361:23151..23281Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 23152..23281 +
1696318719.6920345-CDS-E-siliculosus-1a_F_contig1361:23151..232811696318719.6920345-CDS-E-siliculosus-1a_F_contig1361:23151..23281Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 23152..23281 +
1622927878.5539389-CDS-E-siliculosus-1a_F_contig1361:24195..243391622927878.5539389-CDS-E-siliculosus-1a_F_contig1361:24195..24339Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 24196..24339 +
1696318719.6997957-CDS-E-siliculosus-1a_F_contig1361:24195..243391696318719.6997957-CDS-E-siliculosus-1a_F_contig1361:24195..24339Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 24196..24339 +
1622927878.5657651-CDS-E-siliculosus-1a_F_contig1361:24904..250581622927878.5657651-CDS-E-siliculosus-1a_F_contig1361:24904..25058Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 24905..25058 +
1696318719.7079666-CDS-E-siliculosus-1a_F_contig1361:24904..250581696318719.7079666-CDS-E-siliculosus-1a_F_contig1361:24904..25058Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 24905..25058 +
1622927878.5758414-CDS-E-siliculosus-1a_F_contig1361:25320..254421622927878.5758414-CDS-E-siliculosus-1a_F_contig1361:25320..25442Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 25321..25442 +
1696318719.7172878-CDS-E-siliculosus-1a_F_contig1361:25320..254421696318719.7172878-CDS-E-siliculosus-1a_F_contig1361:25320..25442Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 25321..25442 +
1622927878.5863345-CDS-E-siliculosus-1a_F_contig1361:25784..259911622927878.5863345-CDS-E-siliculosus-1a_F_contig1361:25784..25991Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 25785..25991 +
1696318719.7269785-CDS-E-siliculosus-1a_F_contig1361:25784..259911696318719.7269785-CDS-E-siliculosus-1a_F_contig1361:25784..25991Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 25785..25991 +
1622927878.5955634-CDS-E-siliculosus-1a_F_contig1361:26430..267691622927878.5955634-CDS-E-siliculosus-1a_F_contig1361:26430..26769Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 26431..26769 +
1696318719.7368417-CDS-E-siliculosus-1a_F_contig1361:26430..267691696318719.7368417-CDS-E-siliculosus-1a_F_contig1361:26430..26769Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 26431..26769 +
1622927878.606539-CDS-E-siliculosus-1a_F_contig1361:27097..272861622927878.606539-CDS-E-siliculosus-1a_F_contig1361:27097..27286Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 27098..27286 +
1696318719.7463129-CDS-E-siliculosus-1a_F_contig1361:27097..272861696318719.7463129-CDS-E-siliculosus-1a_F_contig1361:27097..27286Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1361 27098..27286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1361.2161.1

>prot_E-siliculosus-1a_F_contig1361.2161.1 ID=prot_E-siliculosus-1a_F_contig1361.2161.1|Name=mRNA_E-siliculosus-1a_F_contig1361.2161.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=550bp
MRVLLPDGEEKGNNPSFAPVATATPGNDDDAAGLGPSPQQHLPVSPRADL
PPQPHPRAPSREAAADVLRRRTNGKQRPTTVAEPSKDNIALEGNVDDGRD
VSTANAAQGFRPAARTSACDAAAGFSPSGAGGAGGASGSRIEPRGGLSQE
AAAVATENDIESAFEAELKAKGWQLRRQEGDGNCLFRAISQQIYGDPGMH
GDIRRQCLDFMRKERDHYSQFVSEAFDSYVSRKEKDGVHGNNPEMQAASE
LFNRPIEVYVPEKGTAPINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEE
ASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFPGESPTFFKGGRG
MHSSFGEGFGESDLRATEEELEQAAITASLADFRGTTGGGGSSNNGKSDG
AAFSVPRRGGRGSGGRFIGRGAASRVSGGREERRGGGAAAWASGAGSPAG
RVERGEWMSSGGGAAEGKGSGKSRKRRRPGSPPGEGSRKASPNSADGSTS
SAVREMVWSYGFPLARVIAAHDLVGESVEDMLVLLTSDAFQPPENGDRR*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1361:21556..28199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1361.2161.1 ID=mRNA_E-siliculosus-1a_F_contig1361.2161.1|Name=mRNA_E-siliculosus-1a_F_contig1361.2161.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6644bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1361:21556..28199+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCGCGCACTCCGAGTAGCTCTGTCTCTCTTGCTGCCGTCTTTCAGTCTT TGTGGCCTTTCTCACACGCCTTTTTCTCGCGTGAGCTTGAGTGTGTGACC ATGCGGGTGCTGCTTCCTGACGGCGAGGAAAAAGGGAATAACCCCTCTTT CGCTCCTGTTGCGACAGCAACACCCGGAAATGACGACGACGCGGCGGGTT TAGGACCTTCGCCTCAACAACACCTCCCAGTCTCTCCTCGCGCTGACCTA CCCCCCCAACCGCACCCAAGAGCTCCATCGAGAGAGGCGGCAGCAGACGT CCTTCGTCGCAGAACGAACGGTAAGCAACGCCCCACTACCGTGGCAGAAC CGTCGAAGGATAATATCGCCTTGGAGGGGAATGTGGATGATGGGCGTGAC GTGTCGACAGCAAATGCCGCTCAAGGCTTCCGGCCGGCGGCAAGGACCTC TGCCTGTGATGCCGCGTGAGTTTGATGCGTTGAAGCGTGGAGAGAGTGGA CAAGTGCGAAGATGTTTGTGGTTGTACTGTAGAAATAGTTGGGCGATCGT TGAGGTGACCTCTCCCATATGAGTTGACCTTCAAAACTCAACACGGCCTC TCTTTTTCGTTCTCTCTCCTCCTACACTGCTGTGAGTGTAGCTTGTACTC CATTTATTTTATTGAGAGGGAGCGTAGGCGGGCAAACTCGCGCGTTTAGT GTAACTAACTGGGTGCTCCGTGCTCTTACATACGTATATCGATGTGTTTT TTTTGTATCTCTCGGTCCCGCAACCTATACCAATAAGTGATGCAGCACAG GTCAAATGCAGTACCAGGAGCATTCGATGTATCATTCCATTTTCGTGTGA GCGTCGGCCCAAGTGCAACCAGCCCATGCCTCTCGAGCAAAGCAGTACAC CTGGAGTCACACATTCGGCACCCTCCATCCCTCGTTCCCTCCTCCATCCG ACGGCGTCTCTATGCAAACCTTGACCCTCGAACCAGTTGAGCGCAGCATA TATATGCATGTGCGTATATGTGCACCGCTCACTTGGTGCCGTGTGAATCG CGTATGAAACCGTTCTGTACGTGATTCGGCTGTGTTGCCTGTTGTGGCAG TTGTCGAGCGGTACAAGTTTTCCCCCGAACTCCTGTTGTTCATTTAAGTA CCAATCTCTGATGTACCAACGGAGTCCTTGCCAAGGAGAGATTCACAAGC CTCGACTTGGTGCATGCGGCTTGGATCCGGCCGATGTCCTACTGGTAGCC ACAACTTGTAACTTGTAGACAAGTTATCCGGGCCATGGCAGAGATGTGGC GTCCTAAAACGGAAGTGTACCTAGTGCAAGGGTGCAAAGACTGCTATGCG AACAAAGCGTGGCGTGATAGATGAAGCAGTTAAGAACCTGATTTTCAGAT ATGAAGCGAACGCAGGACGTGGTGTGACCGAACCGCATGCAGTCGCTCGC GTGTGGGGTGGGAACCGCCTTGGAGTCTCGAGTTTTGAGAACTACGTTAG CGTACGATTGGGGTTAGTATTTTTTCTGTGACAACCTGTTGCTCACTGCA GTACGGCATGTTTTTTGCGGTCGATGCGCCTTCGTGTCCACACCAGGGCT GGCTTCTCGCCCTCAGGAGCCGGCGGCGCTGGGGGCGCGAGTGGGTCGAG GATAGAGCCCAGAGGTGGACTCTCGCAGGAGGCCGCCGCTGTTGCTACCG AAAACGACATCGAGAGCGCGTTCGAGGTGACCCCATGGTCAAACATAATT GAAAGAAAATAGGCGATGCATATCTGGTACAACTACTATAATGTTGCACC TTGTTTATGCTGGTGTCCGTGTCGATGATATTTCGGAAAGACGAGTATGC AGAACTGTATGCAACCACATATTGTACTTGCCGTTGCTGTCGGTACGAAT GCCTCTAACGCGCACAGGAGAATAAATGAGAACAGGGTAGGATGCCCCCA CTGCTGCTTTGTAAACGAAACGTACGGAACGATTTATACACATGCAGAGA GACTGCCGTTAGGTTTGGCATCGGAAGCCATTGATAGGAACGTATGCTAT GCTGTAGCAGGTCGAATCATTCATTACACGGCGGGTCTCGCGCGTGCTTG AGTCTGTCCCTCATTGATTGTGTTGACATGGGGTTCATTCCCTGAGCCCA CCCCCTCCCCTGCAAAGATATCACTGCCAACGTAGAGTAATCTTGTGTGT TGGATGCACGGACCGCCGGATTGACGAATCGTGCGTTCTACCCGCAGGCA GGACGCCGGATTTCGGCAGTTCTTTCCCTCGTTTTTCCAATACTTCACCG CAAGTCGCATTTTCTATCTACCTGGCTGCTTTCCTCTCTGTCTAGAGAGC AATCCGGGGTCATGAACGTTTTACCCGCCTTTTGGAGCCTGAGACGAAGC CGCAAGGCTACCGGTTTGTCCTTCCGTTGAAAGACAAAGACATACACACG ACTTTGCGAATAATTCTGGAGATTGAAATTGAATATCTCAAGCTCGTTCG TACACCATCGATCACCGACCGGTCTGTTTGAACCGGCAGCAGCCGTGCCA CTTGCAACACAAGGTCAGTGTTGACCCTGGCGTCACTACGTGTTTTGCTG TATTTCCACCTGCCGGCTTGGTTGTCGTGTCAAATCACAGGCTGAGCTTA AGGCAAAGGGTTGGCAATTGCGAAGACAGGAAGGCGATGGAAACTGTCTA TTCCGAGCAATCAGTCAGCAGATTTATGGAGACCCAGGCATGCATGGCGA TATCCGTCGCCAATGCCTAGACTTCATGCGCAAGGTACGGGAGCGAAGAC TGAAGACGAGTTGGGAATGCGTTTGGCTGGTTGTAAGATGAAGTCCCTGA CGTACGAGTTTTCCTACCGCCTCGATCAATTTAGATTTTTTTCCTTTTTT TCCTTGTTTTTATCTTGAACTGGTATGCCAATTAGAGAAAAGTGCCGAAA CGCAACAGGTCAAACTGGAGGGGGTGGGCTAGGTAAGGCCACATTCCGCC ATATAGACGAACGTCTGGTTTCGTACCTAGAGATCAGACTGCTGTATACA TATGTTTATTGTTCCTTCTTTTTGGTTCGCTGAGGTTCGCTGGGCTCTTC GAGTCTAAACACGTCAGCTGTGAGAGCTGTTGAGGTAGGGAAACGTTACA AGTGGCATCTGGCAGCCACCTGTGGGCGGTTCTGCTGCCTGCTTTTATTT TCATCTTGCATCACCCCTGGATGACACCGCTGTGGTCTCTTTTGAGCCTT GTCCGCAGGGATCACGTGTATGCTTGTGAACGAACGTGTGATATGTACTG ATGTATAGTCATCCTCCCACAAGCCGCTCCTTTTATTTCCTTTTCCCAGG AGCGAGACCACTACTCCCAGTTTGTGTCGGAGGCATTTGACAGCTACGTC AGCCGCAAGGAAAAAGACGGCGTGCACGGGAATAACCCCGAGATGCAGGC TGCCAGCGAGCTGTTCAATCGCCCTATCGAGGTCTACGTGCCGGAGAAAG GAAGTGAGCAAGAATCAACTTTTCGCATTTCATGATACATGGGAGGCACT CGACTACTTGGGCTATGTGTGGGCTACAGGATTGGGCGACAGTACGCGCT TAAGGGTTGCATGGTTGGCCTGGTTGTGTCATTTCCATGGCATTTGTCGC TGGACTTGTGTATGAGGAATCCGTAACGGGGCGAGCAACACTACGCGGAC TACCGATATTGGGTGAGTTTTATTTGTTTTCCTTTCGCTGCTCCTTTCGT TGTTCGTTTCTGCAGCTGCTCCGATCAATATCTTCCACGGAGGATACCGT TCGGGCAATGCTCCCATCCGAGTCAGCTACCACGGAGGAAACCACTACAA TGCAATCGTAGACCCTGAGGAAGCCAGCGTTGGACAGGTACGACCACTGT AGATCGAACTCATTGTGTTCTGCAGCAGCGCGCAAGGTGGCAAGGTCTGT TGATTGCCAAGTTTCAAGCTCGCCGTCGCCAAAAGCAGCCTGTGTGGCCG CATTTCGCGACGGGCATATCCAACACAAGCTCATCGCCGATCTGATCCTA TGTGAAGTTGTGCAACAAAGTGTTGTCAGCAGTTGGTTTTCCGATACAGC GCTGTCATGATTTCGAAGTATCGTGCCACCTGTAGCCTCCTGTTGTATGA AAAACTCCAAGACCCACTTCATGTCTGACTTGACACCAAACCTCCCCGTA TACATACCTTTGGAACGTCCTGTTTACAGGGCCTGGGGATTCCTGGCCTG TCGAAAGAAGCTGCGGAAAAGGAATCTCTCAAGCGCGCGTTGGCAGAATC CTGCTCGTCCGCTCATCACGTTTTTCCTGGCGAATCGCCGACGTTCTTCA AAGGAGGGCGGGGAATGCATAGTTCATTTGGGGAGGGCTTCGGGGAGTCT GACCTGAGAGCTACCGAAGAAGAACTGGAGCAGGCGGTGAGAGTGGGAAT GCTCGGGTTATTGTGTGTTTATGAGTGAGCGATTTCGCTCGATGGGTTGT TCTTGTTTCATTTCATGCCGACTATTTACGACAGTATGTTTTGCTCTACC CCTGTCTAGAGAACAACGTTGCAATACACATTCCCGCTTTTTCTGTGGTA GACATGGCCTTCGCATTTTTTCCGACGTTGGTGGGAATGGGCAACTACTG CTGTATGCTTTCTCCTCATCCTGCACTGCCAGTGCGCGGCCATATCGCAC TAGTGTTGGACAGTTGACAGGACGAGCTCTCCCGTTTTCCATTGTGCTTG ATGAAATTATGTTCTAGGTACGTATGCATATGTGTGTTCTTGCATGCCAT TGATAAGTACCAGTCTCGTGCGTGTATGCGTACCCGTTTCTGTGACCAAC CGCTCCTCTCGCCTTCGTGCAACAGGCCATAACGGCTTCTCTCGCCGACT TTCGCGGCACAACCGGTGGCGGCGGGAGCAGCAACAACGGCAAGAGCGAC GGTGCCGCCTTTTCCGTCCCTCGGCGGGGAGGCAGGGGTAGCGGTGGGAG ATTTATTGGACGCGGAGCAGCCAGCAGGGTTTCGGGAGGTCGCGAAGAAC GGAGGGGGGGGGGTGCCGCTGCATGGGCGAGTGGTGCTGGGTCGCCGGCG GGTAGGGTGGAGCGTGGGGAGTGGATGAGCAGTGGCGGAGGAGCAGCAGA AGGAAAAGGCAGCGGAAAGTCTCGAAAGCGCCGACGGCCTGGAAGCCCGC CTGGCGAAGGTTCCGTAAGTGTTCGGTGCCCCCCCTGGGTTTATATGTTG AGCTCTTGCTTGCATATGGAAGACCTTACCCGCTGTAGAGTAGTCAAGGA ATGTTTAGCTCGAGCTCTTTTCAAGTAGTGAAGAGCGTTGTCAAAAAGTG GGTGTGGGCTCACATGTGCTTGCATACACTGTAGTGACCAGTGACAGAAA GGTGTCATACTTTTAGGAATGTCTAGCGTCTCCACACCCTCGGTTTGTTG CAACACGTTGGTATCAATTTCAACGAAACTTGTGCTCTTCAAATTGACCA CCGCTTGCTTCCCCTCCTATGCTCATGTGAACGATTCCTCAGCGAAAAGC ATCACCGAACTCAGCTGATGGCTCTACAAGCAGCGCCGTGAGAGAGATGG TATGGTCCTACGGCTTCCCACTGGCAAGAGTTATTGCAGCCCATGACCTC GTGGGCGAGAGCGTGGAAGATATGCTCGTTTTGCTCACGTCGGATGCTTT TCAGCCGCCAGAAAATGGCGACCGGCGATAGATGACTGCCCGTTTCGCCC ACTCATATTTCGCGCGGAGGAAGTCGAATCATCAGGAATGTACACCGTGA GACGCACACCAGTAGAATATTCGAGTGGTGGACATTTTGTTGATATTTGC GGGACAAAATATTCTGCTCTCCATAGTTTAGAGCTGCTGTTGTTGATGTT TGTGTGGTTGCTCGTGTGATGGGGTGACAGTTGTGATGGAACATGTTGTT TGTTTGGAACGGGGCGAGACACTGTTTTCGGGAAAGGTTTGCCCTCGCGT GAGTGACGGGTTAAGTAAGAGTCTGTCGAGTGTCCGCCCACCTTGCGATC GTGCTTTGTCGCATCCACTATAGCTCTGGCTATGTGTTCCCTGTTTTCCA TGATTGTATATACGGCATGGGGCTAAAATAGTTCTTGCTTGCTAAGTCCG ACTTCGTTGGAGGGCTGGTCGGTTTCATGGCGAAACACACACACACCGGG TTTTTGAACCCAGCTAAATGTGCTTCCGCGGAGCAACTGCTGTTGCCTCC TCTGGTGTTCCGTCATCGAAAAGACCACACTAAACAAGGGCACGAGGGAA ACCACTTGGCTTCACCTACATGTAGCCTTGTAGCTGCGACATCGTGCTCG CGCCCCACGTATTCTGAAGCCTCCTCAGGGTGTGTCTGCTGTTAGTTCCG ATTGCAGACCGATTACTTGCGTGCAGAAATATCGCACAAGGACACAGCAC AGTAGTCTCCTCCTTGCAGAGACATTCTTGCCTCGGTAATTGTGTGTGTG CCATCGCGGTCTGCGCACTACGCATGTTAGAGTTTGAAGCCCTTCAAGAC AGGCCAGCTTTCAACTAGACAAGAACAAGAGCAGACAAGAGTCGGTGTCT TTTTTTGTGTCCATGGTGGACAGGACGATCAAATGTGAAACCGG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1361:21556..28199+

>mRNA_E-siliculosus-1a_F_contig1361.2161.1 ID=mRNA_E-siliculosus-1a_F_contig1361.2161.1|Name=mRNA_E-siliculosus-1a_F_contig1361.2161.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3300bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1361:21556..28199+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGGTGCTGCTTCCTGACGGCGAGGAAAAAGGGAATAACCCCTCTTT
CGCTCCTGTTGCGACAGCAACACCCGGAAATGACGACGACGCGGCGGGTT
TAGGACCTTCGCCTCAACAACACCTCCCAGTCTCTCCTCGCGCTGACCTA
CCCCCCCAACCGCACCCAAGAGCTCCATCGAGAGAGGCGGCAGCAGACGT
CCTTCGTCGCAGAACGAACGGTAAGCAACGCCCCACTACCGTGGCAGAAC
CGTCGAAGGATAATATCGCCTTGGAGGGGAATGTGGATGATGGGCGTGAC
GTGTCGACAGCAAATGCCGCTCAAGGCTTCCGGCCGGCGGCAAGGACCTC
TGCCTGTGATGCCGCATGCGGGTGCTGCTTCCTGACGGCGAGGAAAAAGG
GAATAACCCCTCTTTCGCTCCTGTTGCGACAGCAACACCCGGAAATGACG
ACGACGCGGCGGGTTTAGGACCTTCGCCTCAACAACACCTCCCAGTCTCT
CCTCGCGCTGACCTACCCCCCCAACCGCACCCAAGAGCTCCATCGAGAGA
GGCGGCAGCAGACGTCCTTCGTCGCAGAACGAACGGTAAGCAACGCCCCA
CTACCGTGGCAGAACCGTCGAAGGATAATATCGCCTTGGAGGGGAATGTG
GATGATGGGCGTGACGTGTCGACAGCAAATGCCGCTCAAGGCTTCCGGCC
GGCGGCAAGGACCTCTGCCTGTGATGCCGCGGCTGGCTTCTCGCCCTCAG
GAGCCGGCGGCGCTGGGGGCGCGAGTGGGTCGAGGATAGAGCCCAGAGGT
GGACTCTCGCAGGAGGCCGCCGCTGTTGCTACCGAAAACGACATCGAGAG
CGCGTTCGAGGGCTGGCTTCTCGCCCTCAGGAGCCGGCGGCGCTGGGGGC
GCGAGTGGGTCGAGGATAGAGCCCAGAGGTGGACTCTCGCAGGAGGCCGC
CGCTGTTGCTACCGAAAACGACATCGAGAGCGCGTTCGAGGCTGAGCTTA
AGGCAAAGGGTTGGCAATTGCGAAGACAGGAAGGCGATGGAAACTGTCTA
TTCCGAGCAATCAGTCAGCAGATTTATGGAGACCCAGGCATGCATGGCGA
TATCCGTCGCCAATGCCTAGACTTCATGCGCAAGGCTGAGCTTAAGGCAA
AGGGTTGGCAATTGCGAAGACAGGAAGGCGATGGAAACTGTCTATTCCGA
GCAATCAGTCAGCAGATTTATGGAGACCCAGGCATGCATGGCGATATCCG
TCGCCAATGCCTAGACTTCATGCGCAAGGAGCGAGACCACTACTCCCAGT
TTGTGTCGGAGGCATTTGACAGCTACGTCAGCCGCAAGGAAAAAGACGGC
GTGCACGGGAATAACCCCGAGATGCAGGCTGCCAGCGAGCTGTTCAATCG
CCCTATCGAGGTCTACGTGCCGGAGAAAGGAAGAGCGAGACCACTACTCC
CAGTTTGTGTCGGAGGCATTTGACAGCTACGTCAGCCGCAAGGAAAAAGA
CGGCGTGCACGGGAATAACCCCGAGATGCAGGCTGCCAGCGAGCTGTTCA
ATCGCCCTATCGAGGTCTACGTGCCGGAGAAAGGAACTGCTCCGATCAAT
ATCTTCCACGGAGGATACCGTTCGGGCAATGCTCCCATCCGAGTCAGCTA
CCACGGAGGAAACCACTACAATGCAATCGTAGACCCTGAGGAAGCCAGCG
TTGGACAGCTGCTCCGATCAATATCTTCCACGGAGGATACCGTTCGGGCA
ATGCTCCCATCCGAGTCAGCTACCACGGAGGAAACCACTACAATGCAATC
GTAGACCCTGAGGAAGCCAGCGTTGGACAGGGCCTGGGGATTCCTGGCCT
GTCGAAAGAAGCTGCGGAAAAGGAATCTCTCAAGCGCGCGTTGGCAGAAT
CCTGCTCGTCCGCTCATCACGTTTTTCCTGGCGAATCGCCGACGTTCTTC
AAAGGAGGGCGGGGAATGCATAGTTCATTTGGGGAGGGCTTCGGGGAGTC
TGACCTGAGAGCTACCGAAGAAGAACTGGAGCAGGCGGGCCTGGGGATTC
CTGGCCTGTCGAAAGAAGCTGCGGAAAAGGAATCTCTCAAGCGCGCGTTG
GCAGAATCCTGCTCGTCCGCTCATCACGTTTTTCCTGGCGAATCGCCGAC
GTTCTTCAAAGGAGGGCGGGGAATGCATAGTTCATTTGGGGAGGGCTTCG
GGGAGTCTGACCTGAGAGCTACCGAAGAAGAACTGGAGCAGGCGGCCATA
ACGGCTTCTCTCGCCGACTTTCGCGGCACAACCGGTGGCGGCGGGAGCAG
CAACAACGGCAAGAGCGACGGTGCCGCCTTTTCCGTCCCTCGGCGGGGAG
GCAGGGGTAGCGGTGGGAGATTTATTGGACGCGGAGCAGCCAGCAGGGTT
TCGGGAGGTCGCGAAGAACGGAGGGGGGGGGGTGCCGCTGCATGGGCGAG
TGGTGCTGGGTCGCCGGCGGGTAGGGTGGAGCGTGGGGAGTGGATGAGCA
GTGGCGGAGGAGCAGCAGAAGGAAAAGGCAGCGGAAAGTCTCGAAAGCGC
CGACGGCCTGGAAGCCCGCCTGGCGAAGGTTCCGCCATAACGGCTTCTCT
CGCCGACTTTCGCGGCACAACCGGTGGCGGCGGGAGCAGCAACAACGGCA
AGAGCGACGGTGCCGCCTTTTCCGTCCCTCGGCGGGGAGGCAGGGGTAGC
GGTGGGAGATTTATTGGACGCGGAGCAGCCAGCAGGGTTTCGGGAGGTCG
CGAAGAACGGAGGGGGGGGGGTGCCGCTGCATGGGCGAGTGGTGCTGGGT
CGCCGGCGGGTAGGGTGGAGCGTGGGGAGTGGATGAGCAGTGGCGGAGGA
GCAGCAGAAGGAAAAGGCAGCGGAAAGTCTCGAAAGCGCCGACGGCCTGG
AAGCCCGCCTGGCGAAGGTTCCCGAAAAGCATCACCGAACTCAGCTGATG
GCTCTACAAGCAGCGCCGTGAGAGAGATGGTATGGTCCTACGGCTTCCCA
CTGGCAAGAGTTATTGCAGCCCATGACCTCGTGGGCGAGAGCGTGGAAGA
TATGCTCGTTTTGCTCACGTCGGATGCTTTTCAGCCGCCAGAAAATGGCG
ACCGGCGATAGCGAAAAGCATCACCGAACTCAGCTGATGGCTCTACAAGC
AGCGCCGTGAGAGAGATGGTATGGTCCTACGGCTTCCCACTGGCAAGAGT
TATTGCAGCCCATGACCTCGTGGGCGAGAGCGTGGAAGATATGCTCGTTT
TGCTCACGTCGGATGCTTTTCAGCCGCCAGAAAATGGCGACCGGCGATAG
back to top