mRNA_E-siliculosus-1a_F_contig13561.2126.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13561.2126.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE) HSP 1 Score: 278 bits (711), Expect = 2.080e-86 Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 1
Query: 1 FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAAGEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFRNIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIF 438
FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAA EARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIF++IYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIF
Sbjct: 70 FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAASEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFQDIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIF 215
BLAST of mRNA_E-siliculosus-1a_F_contig13561.2126.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI) HSP 1 Score: 164 bits (416), Expect = 1.810e-44 Identity = 87/146 (59.59%), Postives = 102/146 (69.86%), Query Frame = 1
Query: 1 FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAAGEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFRNIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIF 438
FE R F VTVV DG PPAK TS+ RR +R+ +A +AR L GG EINK AS AC FD RV A +AT LR +I GEVYIAP EADPQ+V+F++I+L TG VYVYANDSDL VLGVR LL +V G L G C+R RL+F
Sbjct: 31 FEDRNFLVTVVFDGRPPPAKSGTSQHRRERRQKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIRGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNARGELVGRCVRQRLLF 176
BLAST of mRNA_E-siliculosus-1a_F_contig13561.2126.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE) HSP 1 Score: 164 bits (415), Expect = 3.160e-44 Identity = 87/146 (59.59%), Postives = 102/146 (69.86%), Query Frame = 1
Query: 1 FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAAGEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFRNIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIF 438
FE R F VTVV DG PPAK TS+ RR +RE +A +AR L GG E+NK AS AC FD RV A +AT LR +I GEVYIAP EADPQ+V+F++I+L TG VYVYANDSDL VLGVR LL +V G L G C+R RL+F
Sbjct: 276 FEDRNFLVTVVFDGQPPPAKGGTSQHRRERREKSAQQARALHAAGGCPMEVNKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGPNVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLF 421
BLAST of mRNA_E-siliculosus-1a_F_contig13561.2126.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI) HSP 1 Score: 157 bits (396), Expect = 1.410e-42 Identity = 84/146 (57.53%), Postives = 100/146 (68.49%), Query Frame = 1
Query: 1 FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAAGEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFRNIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIF 438
FE R F VTVV DG PPAK TS+ RR +R+ +A +AR L GG EINK AS AC FD RV A +AT LR +I GEVYIAP +ADPQ+V+F++I+L TG VYVYANDSDL VLGVR L +V G L G +R RL+F
Sbjct: 4 FEDRNFLVTVVFDGRPPPAKSGTSQHRRERRQKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIRGEVYIAPGKADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDRLVEVVKNARGELVGRSVRQRLLF 149
BLAST of mRNA_E-siliculosus-1a_F_contig13561.2126.1 vs. uniprot
Match: D7FZG7_ECTSI (Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG7_ECTSI) HSP 1 Score: 139 bits (351), Expect = 7.400e-36 Identity = 75/127 (59.06%), Postives = 88/127 (69.29%), Query Frame = 1
Query: 1 FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAAGEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFRNIYLETGCTVYVYANDSDLIVLGVRSLLWDV 381
FE F VTVV DG PP K TS+ RR +R+ +A +AR L GG EINK AS AC F+ RV A +AT R I GEVYIAP EADPQ+V+F++I+L TG VYVYANDSDL VLGVR LL +V
Sbjct: 31 FEDHNFLVTVVFDGRPPPVKSGTSQHRRERRKKSAQQARALHDAGGCPVEINKLASAACAFNGRVTAEIATRSRALIRGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEV 157
BLAST of mRNA_E-siliculosus-1a_F_contig13561.2126.1 vs. uniprot
Match: A0A6H5KRU2_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU2_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 2.410e-19 Identity = 55/137 (40.15%), Postives = 79/137 (57.66%), Query Frame = 1
Query: 7 SRGFKVTVVLDGSTPPAKKSTSEARRTKREAAAGEARELQRTGGRLTE--INKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFRNIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTG 411
S G+ +TVV DG+ PP K +T+ +R ++RE + L+ + L + K A NA F S +VARV+ + + E AP EADPQ+ + +Y G V V NDSDL+V+GVRSLLW+V ++ G L G
Sbjct: 74 SAGWGITVVFDGAPPPGKGATTRSRSSERERTRQQCLRLRESNVPLQHPGLQKAAVNAVAFTSHIVARVSRFVSRSLRCECITAPYEADPQLRVLEEMYTCMGKRVLVRGNDSDLMVIGVRSLLWEVV-SEEGRLFG 209 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13561.2126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig13561.2126.1 >prot_E-siliculosus-1a_F_contig13561.2126.1 ID=prot_E-siliculosus-1a_F_contig13561.2126.1|Name=mRNA_E-siliculosus-1a_F_contig13561.2126.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=146bp FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAAGEARELQRTGGRLTEback to top mRNA from alignment at E-siliculosus-1a_F_contig13561:845..1282+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig13561.2126.1 ID=mRNA_E-siliculosus-1a_F_contig13561.2126.1|Name=mRNA_E-siliculosus-1a_F_contig13561.2126.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13561:845..1282+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13561:845..1282+ >mRNA_E-siliculosus-1a_F_contig13561.2126.1 ID=mRNA_E-siliculosus-1a_F_contig13561.2126.1|Name=mRNA_E-siliculosus-1a_F_contig13561.2126.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13561:845..1282+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |