mRNA_E-siliculosus-1a_F_contig1345.2062.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1345.2062.1 vs. uniprot
Match: D8LI39_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI39_ECTSI) HSP 1 Score: 545 bits (1404), Expect = 1.200e-188 Identity = 366/428 (85.51%), Postives = 373/428 (87.15%), Query Frame = 1
Query: 55 EPSRSHGGPKGGVVTGAKQNGAEGTAKAAGNNDTATNSQVADDGNLGDGSGVGNTLWEQMTAREGKDAARRAGMRAGDWQAERQLQEALRESRQDGGPVGVASALGGSGREDDEASFVDTGFHALATNAVEGEEGEGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DYGDVELVVTQDGGIIPVAAGAVGDGSAAAGRAQXXXXXXXXXXXXXXHDHKLAKKAYEGGVRVGVAKEGVGGGGAAADHVPKNATAMDEEQGEEVTPLPPDIVLTLPDDILHRTMLFLNPEDIFECRAVSSRWSFPGHENVYEGLCRRTYLAQSAKKMLNVKRWRSWQRMFKFRPRLRDTGLYSLKTTYFKKPVRDMSTEWTPGKILRVTYYRYFRFFGDGRVAYALTHEPPKDFVRMLQ 1335
E RSHG V G GAEGTAKAAGN+DTAT+SQVADDGNLGDGSGVGNTLWEQMTAREGKDAAR AGMRAGDWQAERQLQEALRESRQDGGPVGVAS+L GSGREDDEASFVDTGFHALATNAVEGEEGEGEA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DYGDVELVVTQDGGIIPVA GA XXXXXXXXXXXXXX AKE VG A +H+PK ATAMDEEQGEEVTPLPPDIVLT+PDDILHRTMLFLNPEDIFECRAVSSRWSFPGHENVYEGLCRRTYLAQSAKKMLNVKRWRSWQRMFKFRPRLRDTGLYSLKTTYFKKPVRDMSTEWTPGKILRVTYYRYF+FFGDGRVAYALTHEPPKDFVRMLQ
Sbjct: 14 ELQRSHGAH----VRGRPNAGAEGTAKAAGNDDTATSSQVADDGNLGDGSGVGNTLWEQMTAREGKDAARLAGMRAGDWQAERQLQEALRESRQDGGPVGVASSLEGSGREDDEASFVDTGFHALATNAVEGEEGEGEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDYGDVELVVTQDGGIIPVATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXAKEDVGAAAADNEHLPKIATAMDEEQGEEVTPLPPDIVLTMPDDILHRTMLFLNPEDIFECRAVSSRWSFPGHENVYEGLCRRTYLAQSAKKMLNVKRWRSWQRMFKFRPRLRDTGLYSLKTTYFKKPVRDMSTEWTPGKILRVTYYRYFKFFGDGRVAYALTHEPPKDFVRMLQ 433
BLAST of mRNA_E-siliculosus-1a_F_contig1345.2062.1 vs. uniprot
Match: A0A6H5KRR7_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRR7_9PHAE) HSP 1 Score: 417 bits (1073), Expect = 1.740e-139 Identity = 285/355 (80.28%), Postives = 295/355 (83.10%), Query Frame = 1
Query: 37 MAESEKEPSRSHGGPKGGVVTGAKQNGAEGTAKAAGNNDTATNSQVADDGNLGDGSGVGNTLWEQMTAREGKDAARRAGMRAGDWQAERQLQEALRESRQDGGPVGVASALGGSGREDDEASFVDTGFHALATNAVEGEEGEGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYGDVELVVTQDGGIIPVAAGAVGDGSAAAGRAQXXXXXXXXXXXXXX------HDHKLAKKAYEGGVRVGVAKEGVGGGGAA---ADHVPKNATAMDEEQGEEVTPLPPDIVLTLPDDILHRTMLFLNPEDIFECRAVSSRWSFPGHENVYEGLCRRTYLAQ 1074
MAESEK P+R HGG KG V TGAKQNGAEGTAK AG + T T+SQVADDGNLGD S V NTLW+QMTAREGKDAARRAGMRAGDWQAERQLQEALRESRQD GPVGV S L GSGRE DEASFVD GFHALATNA+EGEEGEGEA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YGDVELVVTQDGGIIPVAAG+VGDGS XXXXXXXXXXXXXX HDHKLAKKA+EGGVRVGVA E VG ADH+PKNATA+DEEQGEEVTPLPPDIVLTLPDDILHRTMLFLNPEDIFECRAVS+RWSFP HE VYEGLCRRTYLAQ
Sbjct: 1 MAESEKGPARGHGGAKGVVETGAKQNGAEGTAKPAGTHGTTTSSQVADDGNLGDSSDVCNTLWDQMTAREGKDAARRAGMRAGDWQAERQLQEALRESRQDDGPVGVTSILEGSGREGDEASFVDMGFHALATNALEGEEGEGEAATAADTEVASSRGQPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGDVELVVTQDGGIIPVAAGSVGDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXHDHKLAKKAFEGGVRVGVAAEDVGAAXXXXXXADHLPKNATAIDEEQGEEVTPLPPDIVLTLPDDILHRTMLFLNPEDIFECRAVSTRWSFPEHEKVYEGLCRRTYLAQ 355
BLAST of mRNA_E-siliculosus-1a_F_contig1345.2062.1 vs. uniprot
Match: D8R5V6_SELML (F-box domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R5V6_SELML) HSP 1 Score: 68.9 bits (167), Expect = 4.630e-9 Identity = 48/167 (28.74%), Postives = 83/167 (49.70%), Query Frame = 1
Query: 931 LPDDILHRTMLFLNPEDIFECRAVSSRWSFPGHENVYEGL-CRRTYL---AQSAKKMLNVKRWRSWQRMFKFRPRLRDTGLYSLKTTYFKKPVRDMSTEW-TPGKILRVTYYRYFRFFGDGRVAYALTHEPPKDFVRMLQQEGSPKVVFG-TYTISKWEVNVEIPNP 1413
L +DILH + L+P + + V +W + V+ L C +T+ + +K+L+ SW++M+ RPRLR G+Y + TY + V EW + V YYRY RFF +GR Y T K+ + + + + + +G YT+++ +V+ + P
Sbjct: 55 LSEDILHEIFMRLSPYTLGKASCVCRKWRYAIRNPVFWRLACLKTWQLHGVEGNRKILSQNYDGSWRKMWHHRPRLRFDGIYVSRNTYIRAGV----AEWKVTNPVHLVCYYRYIRFFPNGRFLYKNTALRLKEIAKTMNRRATKENTYGGRYTLAQSQVDAAVVYP 217
BLAST of mRNA_E-siliculosus-1a_F_contig1345.2062.1 vs. uniprot
Match: A0A8H7VMP6_9FUNG (F-box domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VMP6_9FUNG) HSP 1 Score: 66.2 bits (160), Expect = 7.100e-8 Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1
Query: 1114 WQRMFKFRPRLRDTGLYSLKTTYFKKPVRDMSTEWTPGKILRVTYYRYFRFFGDGRVAYALTHEPPKDFVRMLQQEGSPKVVF-GTYTIS--KWEVNVEIPN---PWSWVSFTLQLANGERGRFTHLVMLRHSSVSRN 1509
W MF RPRLR G+Y + + +P R + WT L VTYYRY RFF DGR+ L+ E PKD +R+L + S + VF G + + +V VE+ + P + L + + RGR L L ++S N
Sbjct: 289 WLGMFIERPRLRYDGVY-ISVCQYIRPGRSDTNAWTQPVHL-VTYYRYLRFFPDGRIVKYLSTEEPKDVIRLLTPDFSRRQVFHGKFCLDDDNGQVAVEMRDKTRPRDRFNMLLYIKSTSRGRHNKLGWLSYTSKKDN 424
BLAST of mRNA_E-siliculosus-1a_F_contig1345.2062.1 vs. uniprot
Match: A0A7J7MD57_9MAGN (F-box domain-containing protein n=2 Tax=Magnoliopsida TaxID=3398 RepID=A0A7J7MD57_9MAGN) HSP 1 Score: 65.1 bits (157), Expect = 1.090e-7 Identity = 49/171 (28.65%), Postives = 78/171 (45.61%), Query Frame = 1
Query: 931 LPDDILHRTMLFLNPEDIFECRAVSSRWSF----PGHENVYEGLCRRTYLAQSAK---KMLNVKRWRSWQRMFKFRPRLRDTGLYSLKTTYFKKPVRDMSTEWTP-GKILRVTYYRYFRFFGDGRVAYALTHEPPKDFVRMLQQEGSP--KVVFGTYTISKWEVNVEIPNP 1413
LPD++L+ +NP + + V +W + P H + C RT+ ++L K SW++M+ RPR+R GLY + TY + + EW + V YYRY RFF +G+ Y + + KD + + S V G YT++ +V I P
Sbjct: 88 LPDELLYEVFARMNPYSLGKAACVCRKWRYTIRIPLH---WRNACLRTWQISGPVENYRILQSKYDGSWRKMWLLRPRIRTDGLYVSRNTYIRVGI----AEWRVYNPVHLVCYYRYMRFFPNGKFLYMNSSQKLKDVAKYMNFRASKTESVFSGKYTLTDDKVEAAILYP 251
BLAST of mRNA_E-siliculosus-1a_F_contig1345.2062.1 vs. uniprot
Match: A0A175W378_9PEZI (F-box protein pof7 n=1 Tax=Madurella mycetomatis TaxID=100816 RepID=A0A175W378_9PEZI) HSP 1 Score: 64.7 bits (156), Expect = 2.590e-7 Identity = 42/106 (39.62%), Postives = 53/106 (50.00%), Query Frame = 1
Query: 1111 SWQRMFKFRPRLRDTGLYSLKTTYFKKPVRDMST-EW-TPGKILRVTYYRYFRFFGDGRVAYALTHEPPKDFVRMLQQE---GSPKVVFGTYTISKWEVNVEIPNP 1413
SWQRMF+FRPR+R G Y Y + + +++T W TP I VTYYRY RFF DG T P D V L +E KV + +W + E NP
Sbjct: 351 SWQRMFRFRPRIRFNGCYICTVNYIRSGLANVNTITWNTPVHI--VTYYRYLRFFRDGTAISLQTTAEPADVVHHLTREFVASGSKVAEHSILKGRWRLAREADNP 454
BLAST of mRNA_E-siliculosus-1a_F_contig1345.2062.1 vs. uniprot
Match: A0A4V4H3R7_MUSBA (Ubiquitin-fold modifier 1 n=3 Tax=Musa TaxID=4640 RepID=A0A4V4H3R7_MUSBA) HSP 1 Score: 63.5 bits (153), Expect = 4.240e-7 Identity = 41/167 (24.55%), Postives = 79/167 (47.31%), Query Frame = 1
Query: 931 LPDDILHRTMLFLNPEDIFECRAVSSRWSFP-GHENVYEGLCRRTYLAQSAKKMLNVKRWR---SWQRMFKFRPRLRDTGLYSLKTTYFKKPVRDMSTEW-TPGKILRVTYYRYFRFFGDGRVAYALTHEPPKDFVRMLQQEGSPKVVF-GTYTISKWEVNVEIPNP 1413
LPD++L ++P + V +W + + N++ C + + + + + SW++M+ +RPR+R+ GLY + TY + V EW + V YYRY RF+ G+ Y ++ + K+ V+ + + VF G Y +++ +V + P
Sbjct: 133 LPDELLFEVFSRMSPYTLGRAACVCRKWRYTIRNPNLWRNACLKIWQVSGVETNYRIVQSLYDGSWRKMWVWRPRIRNDGLYVSRNTYIRTGV----AEWKVTNPVHVVCYYRYLRFYPSGKFLYKISSQKVKEVVKCMNRASKADCVFKGDYILTEDQVETALLYP 295
BLAST of mRNA_E-siliculosus-1a_F_contig1345.2062.1 vs. uniprot
Match: A0A5P1EBA5_ASPOF (F-box domain-containing protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EBA5_ASPOF) HSP 1 Score: 61.6 bits (148), Expect = 1.250e-6 Identity = 44/169 (26.04%), Postives = 82/169 (48.52%), Query Frame = 1
Query: 928 TLPDDILHRTMLFLNPEDIFECRAVSSRWSFP-GHENVYEGLCRRTYLAQSAK---KMLNVKRWRSWQRMFKFRPRLRDTGLYSLKTTYFKKPVRDMSTEW-TPGKILRVTYYRYFRFFGDGRVAYALTHEPPKDFVRMLQQEGS-PKVVF-GTYTISKWEVNVEIPNP 1413
+LPD++++ +P + V +W + + ++++ C R + A K++ SW++M+ RPR+R GLY + TY + V EW + V YYRY RF+ +GR+ Y ++ + K+ + + S P V+ G Y +++ +V I P
Sbjct: 62 SLPDELIYEVFARADPYSLGRAACVCRKWRYTIRNPSLWQNACLRAWQLSGASENYKIVTSMYDCSWRKMWTHRPRVRFDGLYVSRNTYVRVGV----AEWKVTNPVHLVCYYRYIRFYPNGRLLYKVSSQRVKEAAKCMHLRASKPDCVYKGEYRLAEDQVEAAILYP 226
BLAST of mRNA_E-siliculosus-1a_F_contig1345.2062.1 vs. uniprot
Match: UPI0010A00D93 (LOW QUALITY PROTEIN: F-box protein 7 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0010A00D93) HSP 1 Score: 60.8 bits (146), Expect = 2.210e-6 Identity = 41/156 (26.28%), Postives = 73/156 (46.79%), Query Frame = 1
Query: 931 LPDDILHRTMLFLNPEDIFECRAVSSRWSFPGHENV-YEGLCRRTYLAQSAK---KMLNVKRWRSWQRMFKFRPRLRDTGLYSLKTTYFKKPVRDMSTEW-TPGKILRVTYYRYFRFFGDGRVAYALTHEPPKDFVRMLQQEGSPKVVF-GTYTIS 1380
LPD++L ++P + ++W + + + C ++ A K++ SW +M+ RPR+R GLY + TY + V EW + V YYRY RFF +G+ Y ++ + K+ +++ + + VF G YT+S
Sbjct: 63 LPDELLFEVFSRMSPYSLGRAHVFVAKWRYTVRNPILWRSACLKSMALSGALTNYKIVQSMYECSWXKMWIHRPRIRHDGLYVSRNTYIRTGV----AEWKVTNPVHLVCYYRYLRFFLNGKFLYKISSQKVKEVAKIMSRASKSECVFKGDYTLS 214
BLAST of mRNA_E-siliculosus-1a_F_contig1345.2062.1 vs. uniprot
Match: J9K2V3_ACYPI (Uncharacterized protein n=3 Tax=Macrosiphini TaxID=33386 RepID=J9K2V3_ACYPI) HSP 1 Score: 60.1 bits (144), Expect = 4.750e-6 Identity = 37/92 (40.22%), Postives = 49/92 (53.26%), Query Frame = 1
Query: 1111 SWQRMFKFRPRLRDTGLYSLKTTYFKKPVRDMSTEWTPGKILRVTYYRYFRFFGDGRVAYALTHEPPKDFVRMLQ-QEGSP-KVVFGTYTIS 1380
+W++MF RP + G Y K TY ++ T G +V YYRY RFF DGRV L++ PP VR LQ +E +P V G Y +S
Sbjct: 173 NWRQMFIERPNVLTIGCYICKITYVRRGEESFRDN-TNGPSFQVVYYRYLRFFSDGRVLMVLSYNPPYKIVRKLQTREKAPFNVSPGHYRLS 263 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1345.2062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1345.2062.1 >prot_E-siliculosus-1a_F_contig1345.2062.1 ID=prot_E-siliculosus-1a_F_contig1345.2062.1|Name=mRNA_E-siliculosus-1a_F_contig1345.2062.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=517bp MAESEKEPSRSHGGPKGGVVTGAKQNGAEGTAKAAGNNDTATNSQVADDGback to top mRNA from alignment at E-siliculosus-1a_F_contig1345:11918..19707+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1345.2062.1 ID=mRNA_E-siliculosus-1a_F_contig1345.2062.1|Name=mRNA_E-siliculosus-1a_F_contig1345.2062.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7790bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1345:11918..19707+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1345:11918..19707+ >mRNA_E-siliculosus-1a_F_contig1345.2062.1 ID=mRNA_E-siliculosus-1a_F_contig1345.2062.1|Name=mRNA_E-siliculosus-1a_F_contig1345.2062.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3102bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1345:11918..19707+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |