mRNA_E-siliculosus-1a_F_contig1341.2050.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1341.2050.1
Unique NamemRNA_E-siliculosus-1a_F_contig1341.2050.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1341.2050.1 vs. uniprot
Match: D7FQ18_ECTSI (Putative tRNA isopentenyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ18_ECTSI)

HSP 1 Score: 945 bits (2442), Expect = 0.000e+0
Identity = 493/543 (90.79%), Postives = 503/543 (92.63%), Query Frame = 1
Query:   85 MAAAPLFLVWAPARALLGAAVSRLPSSTTRLLSCSQNKVRRRRGGSTASRTLSCSSSTAV----KDGAAKVIVIAGPTATGKSSVALALCRDLGGEIVSCDSVQVYRDVFIGCNKPSPQEMKEVRHHLVDVAPLDETFTAGDFVQRAEAAIDDILSRGRVPVVVGGTMMYLHWLVHGKPDAPKKDPAVAQAVATELLPFHDRGDWDGALELLAAVNSTRAASMARNDWYRLSRSLEVLRVPNDTGEEVFTGVRTPINKKYDFRSFFIIGDRERLFRRIDKRCEEMLIRGLLPETAGLLVRGMLDPASPAGRAIGYRQAIDFLLQEARLAD----------GSADANREATDVTATAAADPETRFLEFFLTFAAKTRQYSGEQMKWFRSSKGRDFSWQAWDLGGPIEEVPRRAGSGEKRGGGAKSHEAGSCARAGDGCGWRDVATSITEQFELPRASFDEELGGDYQTMLRSENRQRAGDMKRYVSELSLLGGGGNENEAFGRLVLETKELAARIRQAQPERFRDGAITERPAMEVQGWHAGNR 1671
            MAAAPLFLVWAPARALLGAAVSRLPSSTTRLLS SQNKVRRRRG ST                 +DGAAKVIVIAGPTATGKSS+ALALCRDLGGEIVSCDSVQVYRDVFIGCNKPSP+EMKEVRHHLVDVAPLDETFTAGDFVQRAEAAIDDILSRGRVPVVVGGTMMYLHWLVHGKPDAPKKDPAVAQAVATELLPFHDRGDWDGALELLAAVNS RAASMA+NDWYRLSRSLEVLRVPNDTGEEVFTGVR PINKKYDFRSFFIIGDRERLFRRIDKRCEEML+RGLLPETAGLLVRGMLDPASPAGRAIGYRQAIDFL QEARLAD          GSADANREAT+VTATAAADPETRFLEFFLTFAAKTRQYSGEQMKWFRSSKGRDFSWQAWDLGGPIEEVPRRAGSGEKRGGGAKSHEAGSCARAGDGCGWRDVATSI EQFELPR  FDE+LGG+ Q MLRSENRQRAGDMKRYVSELSLLGGGG ENEA GRLVLET+ELAARIRQAQ E+FRDGAITERPAMEVQGWHAGNR
Sbjct:    1 MAAAPLFLVWAPARALLGAAVSRLPSSTTRLLSYSQNKVRRRRGASTXXXXXXXXXXXXXXXXXEDGAAKVIVIAGPTATGKSSIALALCRDLGGEIVSCDSVQVYRDVFIGCNKPSPEEMKEVRHHLVDVAPLDETFTAGDFVQRAEAAIDDILSRGRVPVVVGGTMMYLHWLVHGKPDAPKKDPAVAQAVATELLPFHDRGDWDGALELLAAVNSRRAASMAKNDWYRLSRSLEVLRVPNDTGEEVFTGVRAPINKKYDFRSFFIIGDRERLFRRIDKRCEEMLMRGLLPETAGLLVRGMLDPASPAGRAIGYRQAIDFLHQEARLADDLRPAIAGASGSADANREATEVTATAAADPETRFLEFFLTFAAKTRQYSGEQMKWFRSSKGRDFSWQAWDLGGPIEEVPRRAGSGEKRGGGAKSHEAGSCARAGDGCGWRDVATSIAEQFELPRERFDEDLGGESQAMLRSENRQRAGDMKRYVSELSLLGGGGTENEALGRLVLETEELAARIRQAQHEQFRDGAITERPAMEVQGWHAGNR 543          
BLAST of mRNA_E-siliculosus-1a_F_contig1341.2050.1 vs. uniprot
Match: W7T6K3_9STRA (Trna dimethylallyltransferase 9 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6K3_9STRA)

HSP 1 Score: 299 bits (766), Expect = 1.700e-91
Identity = 171/355 (48.17%), Postives = 217/355 (61.13%), Query Frame = 1
Query:  280 KVIVIAGPTATGKSSVALALCRDLG----GEIVSCDSVQVYRDVFIGCNKPSPQEMKEVRHHLVDVAPLD--ETFTAGDFVQRAEAAIDDILSRGRVPVVVGGTMMYLHWLVHGKPDAPKKDPAVAQAVATELLPFHDRGDWDGALELLAAVNSTRAASMARNDWYRLSRSLEVLRVPNDTGEEV---------------FTGVRTP-INKKYDFRSFFIIGDRERLFRRIDKRCEEMLIRGLLPETAGLLVRGMLDPASPAGRAIGYRQAIDFLLQEARLADGSADANREATDVTATAAADPETRFLEFFLTFAAKTRQYSGEQMKWFRSSKGRDFSWQAWDLG--GPIEEVPR 1272
            KV+V+ GPTA GKS++AL +C+DL     GEI+S DSVQVYR + +G NKPS  E   V HHL+DV   D  E FTAGDFV++AE AIDD+L+RG +PVVVGGT MY  WLV G+PDAPK DP + Q     L PF D+ DW G L LL A N+ RAA +  NDWYRL R+LEV    +  G +                FTG+R+  +++KYDFR FF+I  RE L R ID+RC +M+  GLL ETA LL  G L+P+SP GRAIGYRQ I++L +E     G      EAT +             EF   FA  TR+Y+ +QM WFR+    +F W  W+L   GP+ +  R
Sbjct:   75 KVVVVTGPTAVGKSNLALRICQDLAPGARGEIISVDSVQVYRGLDVGSNKPSEAERARVPHHLLDVLDADSPEAFTAGDFVRKAEEAIDDVLARGGMPVVVGGTSMYTQWLVQGRPDAPKSDPEMEQRARKMLAPFLDKKDWKGGLSLLKAHNTERAAKLHANDWYRLERALEVALTTSQKGSDPEAAVPPSPSAHSSSSFTGIRSQTLSRKYDFRCFFLIAAREELCRLIDRRCLQMVEGGLLEETAHLLAAGTLNPSSPPGRAIGYRQTIEYLSKE-----GIEGEMAEATALQ------------EFLEDFATATRRYAKQQMVWFRAQA--EFMWLRWNLQDLGPVLDAVR 410          
BLAST of mRNA_E-siliculosus-1a_F_contig1341.2050.1 vs. uniprot
Match: A0A835YP32_9STRA (IPP transferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP32_9STRA)

HSP 1 Score: 284 bits (727), Expect = 3.890e-87
Identity = 151/308 (49.03%), Postives = 199/308 (64.61%), Query Frame = 1
Query:  337 LCRDLGGEIVSCDSVQVYRDVFIGCNKPSPQEMKEVRHHLVDVA-PLDETFTAGDFVQRAEAAIDDILSRGRVPVVVGGTMMYLHWLVHGKPDAPKKDPAVAQAVATELLPFHDRGDWDGALELLAAVNSTRAASMARNDWYRLSRSLEVLRVPNDTGEEVFTGVRT-PINKKYDFRSFFIIGDRERLFRRIDKRCEEMLIRGLLPETAGLLVRGMLDPASPAGRAIGYRQAIDFLLQEARLADGSADANREATDVTATAAADPETRFLEFFLTFAAKTRQYSGEQMKWFRSSKGRDFSWQAWDLGGP 1254
            +C+ +GGEIVS DSVQ+YR + +G NKPS +++  VRHHLV++  P  E +T G +++ A AAIDD+L RG+VP+VVGGTM+Y  WLV G+PDAP+ D A  Q V T L PF   GDWDG LELL AVN+TRAA + +NDW RL RSL++  +    G+EVFTG RT   +++YD RS+FI+ DR    RRI +RC+ ML  GLL E A LL  G+L   S  GRAIGYRQ  ++LL+           +  A D  A          ++F+  F   TR+Y+ +Q+KWFRSSKG +F W A D   P
Sbjct:    3 VCKAVGGEIVSADSVQIYRRLDVGANKPSAEDLAAVRHHLVNILDPGSEEYTVGQWLRAAYAAIDDVLQRGKVPLVVGGTMLYTQWLVQGQPDAPEGDAATQQIVRTILAPFEATGDWDGGLELLRAVNATRAAQLNKNDWVRLGRSLQIS-MDMRQGDEVFTGERTGAASERYDVRSYFIVADRAEAARRITQRCQAMLSSGLLQEVAALLHAGLLPKESSPGRAIGYRQMREYLLRP----------DPHAGDAEA---------LVQFYSDFCTATRRYASDQLKWFRSSKGTEFVWCARDFADP 290          
BLAST of mRNA_E-siliculosus-1a_F_contig1341.2050.1 vs. uniprot
Match: A0A4D9D1X7_9STRA (E3 ubiquitin-protein ligase n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1X7_9STRA)

HSP 1 Score: 299 bits (766), Expect = 1.020e-84
Identity = 171/355 (48.17%), Postives = 218/355 (61.41%), Query Frame = 1
Query:  280 KVIVIAGPTATGKSSVALALCRDLG----GEIVSCDSVQVYRDVFIGCNKPSPQEMKEVRHHLVDVAPLD--ETFTAGDFVQRAEAAIDDILSRGRVPVVVGGTMMYLHWLVHGKPDAPKKDPAVAQAVATELLPFHDRGDWDGALELLAAVNSTRAASMARNDWYRLSRSLEVLRVPNDTGEEV---------------FTGVRTP-INKKYDFRSFFIIGDRERLFRRIDKRCEEMLIRGLLPETAGLLVRGMLDPASPAGRAIGYRQAIDFLLQEARLADGSADANREATDVTATAAADPETRFLEFFLTFAAKTRQYSGEQMKWFRSSKGRDFSWQAWDLG--GPIEEVPR 1272
            KV+V+ GPTA GKS++AL +C+DL     GEI+S DSVQVYR + +G NKPS  E   V HHL+DV   D  E FTAGDFV++AE AIDD+L+RG +PVVVGGT MY  WLV G+PDAPK DP + Q     L PF D+ DW+G L LL A N+ RAA +  NDWYRL R+LEV    +  G +                FTG+R+  +++KYDFR FF+I  RE L R ID+RC +M+  GLL ETA LL  G L+P+SP GRAIGYRQ I++L +E     G      EAT +             EF   FA  TR+Y+ +QM WFR+    +F W  W+L   GP+ +  R
Sbjct: 2472 KVVVVTGPTAVGKSNLALRICQDLAQGARGEIISVDSVQVYRGLDVGSNKPSEAERARVPHHLLDVLDADSPEAFTAGDFVRKAEEAIDDVLARGGMPVVVGGTSMYTQWLVQGRPDAPKSDPEMEQRARKMLAPFLDKKDWEGGLSLLKAHNTERAAKLHANDWYRLERALEVALTTSQKGSDPEAAVPPSPSAHSSSSFTGIRSQTLSRKYDFRCFFLIAAREDLCRLIDRRCLQMVEGGLLEETAHLLAAGTLNPSSPPGRAIGYRQTIEYLSKE-----GIEGEMAEATALQ------------EFLEDFATATRRYAKQQMVWFRAQA--EFIWLRWNLQDLGPVLDAVR 2807          
BLAST of mRNA_E-siliculosus-1a_F_contig1341.2050.1 vs. uniprot
Match: A0A8J5XJR5_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJR5_DIALT)

HSP 1 Score: 275 bits (703), Expect = 1.290e-82
Identity = 152/318 (47.80%), Postives = 193/318 (60.69%), Query Frame = 1
Query:  283 VIVIAGPTATGKSSVALALCRDLGGEIVSCDSVQVYRDVFIGCNKPSPQEMKEVRHHLVDVAPLDETFTAGDFVQRAEAAIDDILSRGRVPVVVGGTMMYLHWLVHGKPDAPKKDPAVAQAVATELLPFHDRGDWDGALELLAAVNSTRAASMARNDWYRLSRSLEVLRVPNDTGEEVFTGV-RTPINKKYDFRSFFIIGDRERLFRRIDKRCEEMLIRGLLPETAGLLVRGMLDPASPAGRAIGYRQAIDFLLQ-EARLADGSADANREATDVTATAAADPETRFLEFFLTFAAKTRQYSGEQMKWFRSSKGRDFSW 1230
            VIVIAGPT  GKS VA+ L   LGGEI+S DSVQVYR + +G NKPS  EM+ VRHHLV V    E + AG+F + A  AI D+ +RGR  + VGGT MY+HWL++G P APK DPA+A  VA  L P  +   WD A+ LL A +  RAA++ RNDWYRL R+L +    +    E+     R  +++ YD R+FF++  RE+L RRID RCE ML  GLL ET+ LL  G L P S  GRA+GYRQA+D+L++ +AR ADG A                    FL F   F   +R Y+ +QMKWFR      F W
Sbjct:   42 VIVIAGPTGVGKSDVAMQLAARLGGEIISVDSVQVYRSLDVGSNKPSAAEMRRVRHHLVSVREPSEPYAAGNFYRDAADAIADVHARGRWAICVGGTSMYMHWLINGTPTAPKADPALAAQVAARLAPLREAHAWDDAIALLRASDPERAAALGRNDWYRLMRALTIAAQTSTPLAELRRDEGREQLHELYDLRAFFLVAPREQLARRIDARCERMLADGLLRETSALLASGELHPDSQPGRAVGYRQAVDYLIRTDARDADGDA--------------------FLAFARAFTQASRAYAAQQMKWFRKEPA--FEW 337          
BLAST of mRNA_E-siliculosus-1a_F_contig1341.2050.1 vs. uniprot
Match: A0A7S3S7Q7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S7Q7_EMIHU)

HSP 1 Score: 271 bits (694), Expect = 6.890e-81
Identity = 176/476 (36.97%), Postives = 235/476 (49.37%), Query Frame = 1
Query:  274 AAKVIVIAGPTATGKSSVALALCRDLGGEIVSCDSVQVYRDVFIGCNKPSPQEMKEVRHHLVDVAPLDETFTAGDFVQRAEAAIDDILSRGRVPVVVGGTMMYLHWLVHGKPDAPKKDPAVAQAVATELLPFHDRGDWDGALELLAAVNSTRAASMARNDWYRLSRSLEVLRV-----------PNDTGEEVFTGVRTPINKKYDFRSFFIIGDRERLFRRIDKRCEEMLIRGLLPETAGLLVRGMLDPASPAGRAIGYRQAIDFLLQEARLADGSADANREATDVTATAAADPETRFLEFFLTFAAKTRQYSGEQMKWFRSSKGRDFSWQAWDLGGPIEEVPRRAGSGEKRGGGAKSHEAGSCARAGDGCGWRDVATSITEQFELPRASFDEELGGDYQTMLRSENRQRAGDMKRYVSELSLLGGGGNENEAFGRLVLETKELAARIRQAQPERFRDGAITERPAMEVQGWHAGN 1668
            A +V+V+AGPTA GKS++ + LC  L GE+VS DSVQVYR + IG NKPS  E     HHL+DVA L + +TAG F   A  A+D++LSRG+ PV+VGGT MYL WLVHG+P AP+ DPAVA A    L P+ +  DW+G L LL A++  RAA ++ NDWYRL R+L V              P+D+G +        +    D R FF+   R  L RRID+RC  ML  GLL E + LL++  L P+ PAGRAIGYRQA+++LL+          A R+A  +++            F   FAA +R+Y+ +Q KWFRS     F W   D   P  EV                                  A  +      PR   +++L    Q  +R+        MKRYV     L     E+ A G  +L   +      QA      D    +    E   WHA +
Sbjct:   49 ARRVVVVAGPTAVGKSALGMRLCEALPGELVSVDSVQVYRGLQIGANKPSAVERARTAHHLIDVAELSDDYTAGTFYADALTAVDEVLSRGKTPVLVGGTSMYLRWLVHGRPTAPRSDPAVAAAARDALQPYQEAADWEGGLALLRALDGPRAAQLSANDWYRLHRALVVAMQTRSQAAALPPPPDDSGLDA-------LRASLDLRCFFLTAPRVPLCRRIDERCGAMLQAGLLREVSDLLLQRKLLPSHPAGRAIGYRQALEYLLRPCY-------APRDADALSS------------FVHAFAAASRRYAQQQTKWFRSEPS--FEWVDVDWSAP--EV---------------------------------AAERVLASVRKPRLEHEDDLAAPRQAEMRAVKPDEGKAMKRYVERHDAL-----EDAAVGEALLREADACCEALQAARA---DLLAADEALAERYPWHAAD 453          
BLAST of mRNA_E-siliculosus-1a_F_contig1341.2050.1 vs. uniprot
Match: A0A7S4BQD7_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BQD7_CHRCT)

HSP 1 Score: 251 bits (642), Expect = 1.170e-74
Identity = 142/318 (44.65%), Postives = 184/318 (57.86%), Query Frame = 1
Query:  280 KVIVIAGPTATGKSSVALALCRDLGGEIVSCDSVQVYRDVFIGCNKPSPQEMKEVRHHLVDVAPLDETFTAGDFVQRAEAAIDDILSRGRVPVVVGGTMMYLHWLVHGKPDAPKKDPAVAQAVATELLPFHDRGDWDGALELLAAVNSTRAASMARNDWYRLSRSLEVLRVPNDTGEEVFTGVRTPINKKY----------DFRSFFIIGDRERLFRRIDKRCEEMLIRGLLPETAGLLVRGMLDPASPAGRAIGYRQAIDFLLQEARLADGSADANREATDVTATAAADPETRFLEFFLTFAAKTRQYSGEQMKWFR 1203
            +VIV+ GPTA GKS++ L LC  L GE++S DSVQVYR + IG NKPS  E+  V HHLVD+    + +TAG F + A  A+  +L RG+ PV+VGGT MYL WLV+G+PDAP+ DPA+A+     L  +   GDW+ AL  LA  +S RA  +  NDWYRL R+L V+ +    G    T    P+  +           D R FF+   RE+L RRID RCE+M+  GL+ E A LL    L P+SPAGRAIGYRQ ID+LL+E  + D                          F   FAA +RQY+ +Q KWFR
Sbjct:   40 RVIVLTGPTAVGKSALGLRLCEALPGELISVDSVQVYRGLQIGANKPSASELARVPHHLVDICEPRDDYTAGAFYRDALKAVKQVLERGKTPVLVGGTSMYLKWLVNGRPDAPRSDPAIAKRAHAMLQDYEKAGDWNSALSRLAEYDSHRAKELFANDWYRLHRAL-VVALQTQEGS---TNQEEPVEPEVLQLDELRASLDMRCFFLTFPREQLCRRIDSRCEQMVQAGLIEEVAELLATERLLPSSPAGRAIGYRQTIDYLLREPFVPDDKG-------------------ALQHFVEGFAAASRQYAAKQTKWFR 334          
BLAST of mRNA_E-siliculosus-1a_F_contig1341.2050.1 vs. uniprot
Match: A0A0M0K692_9EUKA (tRNA dimethylallyltransferase 9 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K692_9EUKA)

HSP 1 Score: 251 bits (640), Expect = 7.110e-74
Identity = 158/404 (39.11%), Postives = 202/404 (50.00%), Query Frame = 1
Query:  337 LCRDLGGEIVSCDSVQVYRDVFIGCNKPSPQEMKEVRHHLVDVAPLDETFTAGDFVQRAEAAIDDILSRGRVPVVVGGTMMYLHWLVHGKPDAPKKDPAVAQAVATELLPFHDRGDWDGALELLAAVNSTRAASMARNDWYRLSRSLEVL-----------RVPNDTGEEVFTGVRTPINKKYDFRSFFIIGDRERLFRRIDKRCEEMLIRGLLPETAGLLVRGMLDPASPAGRAIGYRQAIDFLLQEARL-ADGSADANREATDVTATAAADPETRFLEFFLTFAAKTRQYSGEQMKWFRSSKGRDFSWQAWDLGGPIEEVPRRAGSGEKRGGGAKSHEAGSCARAGDGCGWRDVATSITEQFELPRASFDEELGGDYQTMLRSENRQRAGDMKRYVSELSLL 1512
            LC  L GE++S DSVQVYR + IG NKPS  E   + HHL+DV   DE +TAG F   A  A++++L+RGRVPV+VGGT MYL WLV G+P+APK DPA+A+ V   L P    G W   LE LAA++  RA  ++RNDWYRLSR+L V            R+P+  G +        +    D R FF+   RE L RRID RCE ML  GLL E + LL  G L P+SPAGRAIGYRQ +D+LL+     A+G A                     +EF   F A +R+Y+ +Q+KWFR+     F W   D   P                                     V   +  Q +L RA F++ L    Q  LR+     A  MK Y   L  L
Sbjct:    3 LCELLPGELISVDSVQVYRGLQIGANKPSADERARIVHHLLDVRDPDEEYTAGAFYADALRAVEEVLARGRVPVLVGGTSMYLRWLVSGRPEAPKADPAIAERVRLLLAPLEASGSWAEGLEQLAALDGARAEMLSRNDWYRLSRALTVALQTSSTAAALPRLPDPEGLDA-------LRSSLDLRCFFLAAPREALCRRIDARCEAMLEAGLLEEVSSLLASGRLLPSSPAGRAIGYRQVLDYLLRSPWAPAEGVA--------------------LVEFLEGFTAASRRYAAQQVKWFRNEP--QFEWVEADWAAP-----------------------------------ETVEQHVLGQLDLERARFEQLLQAPRQAELRALRPDEAKRMKTYAPRLRAL 342          
BLAST of mRNA_E-siliculosus-1a_F_contig1341.2050.1 vs. uniprot
Match: A0A7S4F577_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F577_CHRCT)

HSP 1 Score: 252 bits (644), Expect = 1.380e-73
Identity = 167/445 (37.53%), Postives = 219/445 (49.21%), Query Frame = 1
Query:  280 KVIVIAGPTATGKSSVALALCRDLGGEIVSCDSVQVYRDVFIGCNKPSPQEMKEVRHHLVDVAPLDETFTAGDFVQRAEAAIDDILSRGRVPVVVGGTMMYLHWLVHGKPDAPKKDPAVAQAVATELLPFHDRGDWDGALELLAAVNSTRAASMARNDWYRLSRSLEVLRVPNDTGEEVFTGVRTPINKKY----------DFRSFFIIGDRERLFRRIDKRCEEMLIRGLLPETAGLLVRGMLDPASPAGRAIGYRQAIDFLLQEARLADGSADANREATDVTATAAADPETRFLEFFLTFAAKTRQYSGEQMKWFRSSKGRDFSWQAWDLGGPIEEVPRRAGSGEKRGGGAKSHEAGSCARAGDGCGWRDVATSITEQFELPRASFDEELGGDYQTMLRSENRQRAGDMKRYVSELSLLGGGGNENEAFGRLVLETKELAARI 1584
            +VIV+ GPTA GKS++ L LC  L GE++S DSVQVYR + IG NKPS  E+  V HHLVD+    + +TAG F + A  A+  +L RG+ PV+VGGT MYL WLV+G+PDAP+ DPA+A+     L  +   GDW+ AL  LA  +S RA  +  NDWYRL R+L V+ +    G    T    P+  +           D R FF+   RE+L RRID RCE+M+  GL+ E A LL    L P+SPAGRAIGYRQ ID+LL+E  + D                          F   FAA +RQY+ +Q KWFR  K   F W      G  E                                     T++ +   + RA F+EEL    Q  LR   R     M+ Y+    LL  G      +  L+      AAR+
Sbjct:   40 RVIVLTGPTAVGKSALGLRLCEALPGELISVDSVQVYRGLQIGANKPSASELARVPHHLVDICEPRDDYTAGAFYRDALKAVKQVLERGKTPVLVGGTSMYLKWLVNGRPDAPRSDPAIAKRAHAMLQDYEKAGDWNSALSRLAEYDSHRAKELFANDWYRLHRAL-VVALQTQEGS---TNQEEPVEPEVLQLDELRASLDMRCFFLTFPREQLCRRIDSRCEQMVQAGLIEEVAELLATERLLPSSPAGRAIGYRQTIDYLLREPFVPDDKG-------------------ALQHFVEGFAAASRQYAAKQTKWFR--KEPLFRWVETTSIGTAE-------------------------------------TTLMQATRIGRAEFEEELRSTSQISLRRVTRDEQKAMRCYMRIDGLLCDGAR----WRALLARADACAARL 418          
BLAST of mRNA_E-siliculosus-1a_F_contig1341.2050.1 vs. uniprot
Match: A0A8J2S9H3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9H3_9STRA)

HSP 1 Score: 249 bits (637), Expect = 1.570e-73
Identity = 143/313 (45.69%), Postives = 193/313 (61.66%), Query Frame = 1
Query:  277 AKVIVIAGPTATGKSSVALALCRDLGGEIVSCDSVQVYRDVFIGCNKPSPQEMKEVRHHLVDVAPLDETFTAGDFVQRAEAAIDDILSRGRVPVVVGGTMMYLHWLVHGKPDAPKKDPAVAQAVATELLPFHDRGDWDGALELLAAVN---STRAASMARNDWYRLSRSLEVLRVPNDTGEEVFTGVRTPINKKYDFRSFFII-GDRERLFRRIDKRCEEMLIRGLLPETAGLLVRGMLDPASPAGRAIGYRQAIDFLLQEARLADGSADANREATDVTATAAADPETRFLEFFLTFAAKTRQYSGEQMKWFR 1203
            A+V+V+AGPTA GKSS AL LC    GE+VS DSVQ+YR + +G NKPSP E++ VRHHLVDVA   E ++AG +   A  A+ D++ RG++PVVVGGTMMY  WLV G PDAPK     A +    L P+ D  DW+ AL  +AA +   + R A +++ND+YRLSR+LE+  +  + G       R  +   +D R  F+   DR  L+  ID+RC+ ML RGLL ETA L   G L  +S A RAIGYRQA+D+L  EAR++ G ADA+ E+              ++ F   F   +R Y+ EQ+KW+R
Sbjct:    8 ARVLVVAGPTAVGKSSAALRLCEARDGELVSADSVQLYRGLDVGSNKPSPAELQRVRHHLVDVADASEPWSAGAWCAAAAEAVGDVVKRGKLPVVVGGTMMYAQWLVRGAPDAPKASATAAASAQEFLAPYGD--DWESALSAVAARSEACAARVAKLSQNDFYRLSRALEI-ELDREAGGGSVEARRPVLGSDFDVRCAFLAPADRTALYHAIDERCDIMLARGLLEETANLRAAGRLPSSSTAARAIGYRQALDYL--EARVS-GEADASLES--------------YVAFCRQFRTASRNYAAEQLKWYR 300          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1341.2050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ18_ECTSI0.000e+090.79Putative tRNA isopentenyltransferase n=2 Tax=Ectoc... [more]
W7T6K3_9STRA1.700e-9148.17Trna dimethylallyltransferase 9 n=1 Tax=Nannochlor... [more]
A0A835YP32_9STRA3.890e-8749.03IPP transferase-domain-containing protein n=1 Tax=... [more]
A0A4D9D1X7_9STRA1.020e-8448.17E3 ubiquitin-protein ligase n=6 Tax=Monodopsidacea... [more]
A0A8J5XJR5_DIALT1.290e-8247.80Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S3S7Q7_EMIHU6.890e-8136.97Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S4BQD7_CHRCT1.170e-7444.65Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A0M0K692_9EUKA7.110e-7439.11tRNA dimethylallyltransferase 9 n=1 Tax=Chrysochro... [more]
A0A7S4F577_CHRCT1.380e-7337.53Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A8J2S9H3_9STRA1.570e-7345.69Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1341contigE-siliculosus-1a_F_contig1341:1379..5741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1629
Model size1758
Exons7
Ec32 orthologEc-01_007830.1
Ec32 ortholog descriptionputative tRNA isopentenyltransferase
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001,ko01000,ko01006,ko03016
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EC2.5.1.75
EggNOG OGsCOG0324@1,KOG1384@2759
EggNOG free text desc.Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
KEGG Pathwayko00908,ko01100,ko01110,map00908,map01100,map01110
KEGG ReactionR01122
KEGG koko:K00791
KEGG rclassRC02820
Seed eggNOG ortholog2880.D7FQ18
Seed ortholog evalue8.8e-274
Seed ortholog score949.1
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927858.7991068-UTR-E-siliculosus-1a_F_contig1341:1378..14621622927858.7991068-UTR-E-siliculosus-1a_F_contig1341:1378..1462Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1341 1379..1462 -
1696318711.5547616-UTR-E-siliculosus-1a_F_contig1341:1378..14621696318711.5547616-UTR-E-siliculosus-1a_F_contig1341:1378..1462Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1341 1379..1462 -
1622927858.9132595-UTR-E-siliculosus-1a_F_contig1341:5696..57411622927858.9132595-UTR-E-siliculosus-1a_F_contig1341:5696..5741Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1341 5697..5741 -
1696318711.63098-UTR-E-siliculosus-1a_F_contig1341:5696..57411696318711.63098-UTR-E-siliculosus-1a_F_contig1341:5696..5741Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1341 5697..5741 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927858.812201-CDS-E-siliculosus-1a_F_contig1341:1462..22221622927858.812201-CDS-E-siliculosus-1a_F_contig1341:1462..2222Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1341 1463..2222 -
1696318711.568295-CDS-E-siliculosus-1a_F_contig1341:1462..22221696318711.568295-CDS-E-siliculosus-1a_F_contig1341:1462..2222Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1341 1463..2222 -
1622927858.824728-CDS-E-siliculosus-1a_F_contig1341:2712..28461622927858.824728-CDS-E-siliculosus-1a_F_contig1341:2712..2846Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1341 2713..2846 -
1696318711.577719-CDS-E-siliculosus-1a_F_contig1341:2712..28461696318711.577719-CDS-E-siliculosus-1a_F_contig1341:2712..2846Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1341 2713..2846 -
1622927858.8369493-CDS-E-siliculosus-1a_F_contig1341:3544..36221622927858.8369493-CDS-E-siliculosus-1a_F_contig1341:3544..3622Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1341 3545..3622 -
1696318711.5868871-CDS-E-siliculosus-1a_F_contig1341:3544..36221696318711.5868871-CDS-E-siliculosus-1a_F_contig1341:3544..3622Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1341 3545..3622 -
1622927858.8550477-CDS-E-siliculosus-1a_F_contig1341:4216..42941622927858.8550477-CDS-E-siliculosus-1a_F_contig1341:4216..4294Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1341 4217..4294 -
1696318711.6004827-CDS-E-siliculosus-1a_F_contig1341:4216..42941696318711.6004827-CDS-E-siliculosus-1a_F_contig1341:4216..4294Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1341 4217..4294 -
1622927858.8691332-CDS-E-siliculosus-1a_F_contig1341:4627..47581622927858.8691332-CDS-E-siliculosus-1a_F_contig1341:4627..4758Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1341 4628..4758 -
1696318711.6077924-CDS-E-siliculosus-1a_F_contig1341:4627..47581696318711.6077924-CDS-E-siliculosus-1a_F_contig1341:4627..4758Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1341 4628..4758 -
1622927858.8830976-CDS-E-siliculosus-1a_F_contig1341:4997..51921622927858.8830976-CDS-E-siliculosus-1a_F_contig1341:4997..5192Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1341 4998..5192 -
1696318711.615071-CDS-E-siliculosus-1a_F_contig1341:4997..51921696318711.615071-CDS-E-siliculosus-1a_F_contig1341:4997..5192Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1341 4998..5192 -
1622927858.9001753-CDS-E-siliculosus-1a_F_contig1341:5443..56961622927858.9001753-CDS-E-siliculosus-1a_F_contig1341:5443..5696Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1341 5444..5696 -
1696318711.6228073-CDS-E-siliculosus-1a_F_contig1341:5443..56961696318711.6228073-CDS-E-siliculosus-1a_F_contig1341:5443..5696Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1341 5444..5696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1341.2050.1prot_E-siliculosus-1a_F_contig1341.2050.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1341 1463..5696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1341.2050.1

>prot_E-siliculosus-1a_F_contig1341.2050.1 ID=prot_E-siliculosus-1a_F_contig1341.2050.1|Name=mRNA_E-siliculosus-1a_F_contig1341.2050.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=543bp
MPLAWPKSLPLIFMAAAPLFLVWAPARALLGAAVSRLPSSTTRLLSCSQN
KVRRRRGGSTASRTLSCSSSTAVKDGAAKVIVIAGPTATGKSSVALALCR
DLGGEIVSCDSVQVYRDVFIGCNKPSPQEMKEVRHHLVDVAPLDETFTAG
DFVQRAEAAIDDILSRGRVPVVVGGTMMYLHWLVHGKPDAPKKDPAVAQA
VATELLPFHDRGDWDGALELLAAVNSTRAASMARNDWYRLSRSLEVLRVP
NDTGEEVFTGVRTPINKKYDFRSFFIIGDRERLFRRIDKRCEEMLIRGLL
PETAGLLVRGMLDPASPAGRAIGYRQAIDFLLQEARLADGSADANREATD
VTATAAADPETRFLEFFLTFAAKTRQYSGEQMKWFRSSKGRDFSWQAWDL
GGPIEEVPRRAGSGEKRGGGAKSHEAGSCARAGDGCGWRDVATSITEQFE
LPRASFDEELGGDYQTMLRSENRQRAGDMKRYVSELSLLGGGGNENEAFG
RLVLETKELAARIRQAQPERFRDGAITERPAMEVQGWHAGNR*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1341:1379..5741-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1341.2050.1 ID=mRNA_E-siliculosus-1a_F_contig1341.2050.1|Name=mRNA_E-siliculosus-1a_F_contig1341.2050.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4363bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1341:1379..5741- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCAACGTGCAGCAACACACCACAACAGCGTGACAAAGTAGGTAGATGCC GCTTGCGTGGCCCAAATCCTTGCCGCTCATTTTCATGGCGGCGGCACCAC TCTTCCTTGTGTGGGCTCCGGCGAGAGCTCTGCTTGGAGCAGCTGTTTCC AGGTTGCCATCAAGCACGACTCGGTTGCTCTCGTGCTCTCAGAACAAGGT GCGGCGGCGCCGGGGTGGTTCAACGGCCTCACGGACGCTCTCATGCAGCA GCAGCACGGCGGTGAAGGATGGAGCCGCGAAAGTGATCGTTATCGCAGGT GCGAACTACTGCGGTAACAAGAGCTACAGCAGTATTTACGATTTACGATA TTCGCTCTGGCATCCCACACAACCATTTTCGGGTGCGGTATGATCACAAG ACTGTTGTTTTCAGCCAACGCGATTGCTGCAATCCAAAGGGCCGGTTGCT CGTTGACTCGTTGACTATCTTGGAGGACATGCGCCATTTCTGACTAGGGA ATTGGCTGTGATAAAGACGCAAGCGTGCCCCCCGTATTAAATACGGCAGG TCCCACGGCCACTGGGAAGTCATCCGTCGCGCTGGCCCTCTGCAGGGATC TTGGTGGAGAGATAGTGTCCTGCGACTCGGTTCAAGTGTATAGAGACGTC TTCATTGGCTGCAACAAGCCGTCACCACAGGAGATGAAAGAGGTGCGCCA TCACCTCGTGGACGTGGCCCCCCTCGACGAAACGTTCACAGCCGGTATGT TGTAATGGTCATGACCGGTACTGCTGTTCACGAATTTCTCTTGTCACCGC GCAATCTGTTTGTATTATAGCCGCATCACTGGATGGAGCTATGAATGTAC AGCGGTCCTATGCATAATGTCGACGGTTGCTTGGACTGACCAGGCACTGC TGATGCACGAATGACGTTGAGCTGAAGCACATATCCGACCCAGTCGCTTC GTCCGCTTCCCGTATCACCTCACAATACACCAGGTGATTTCGTGCAACGA GCTGAAGCGGCAATAGACGACATCTTGTCGCGTGGAAGAGTGCCGGTGGT GGTTGGGGGCACGATGATGTACCTCCATTGGCTTGTGCATGGCAAACCGG ACGCCCCCAAGAAGGTAATGCAACAGAGAAAATGACAGAGGGAGAGGAGG TGCAATCAAACTGTGTGCACCTGGAAACACATCCTGTGTATGGTACCGAA CATGGAAATTATATTGTGTACCTTCAGAGTAGTTGGCACGTCAGGTCAGC CGCCGTCACCGGGGCCATGATTTTCACCTCCCACGGTTGGGCGCAGCCGG CATTCCTCCCAAGTGCCTGCGCTCCTTTATTTTGCAGTAGTGGCCACTGG AGAATCCAACCTTTCCGCACGACTCATTGGCGGTTGTGTTTCGGGTGTCA TCCTCTTGTTCCGATGCATTATATGCCGGGTGGTTCTGGGTGAGCAGGAT CCCGCGGTGGCGCAGGCGGTGGCGACGGAGCTACTCCCGTTCCATGATCG GGGGGATTGGGATGGCGCTTTGGAGGTGCGACACGCAGTATGAAAGCTGG TGTTTGTTTGTGTTCTCATCCCACACATTCTCGTCATCAGTCTGGCCTCT GTCCTGCACTCGCTGGATTGGTGTCATTGTCACGAAAGAAAGACTCCTGT GCGCGAGGCCCCCACTGTCTTTCGGTGGGGTATGTATCCCTTATTTCTGT GTCGAAGTTTTTAATTTCTCTCGTCAGAAGTTCAGTCAAACTACATATCT AGGTACTCACAAACTGTGCTTGTGTCATGAAGGCTATTGTAGGACGTGGT ACAACTTGCGCTACGCGGGCTGAAGAAACGAACAGGTCACCGGAATACAC TAAAAAGTGTATCATCGGACGCGGGCATGATTCGACAGTATTTGTTTCAC TCATTGATTTCGAACCTATAATCGTTGCATCGAAGTACATGGAACCACTT TTTCATCGACGGCGGTTGTGTGGGCCTTGTGCTGCAAGCCTAGAGCGTTG CTGCTGGCTTGTTTCGTCGGCGCAGTTGGCCGGGTCCAAAATAGTATTTT TATTCGGCGACCGTTCGAACCAAGACTTTCATCATACCTCCCCCGCCCCC CGCCCCCCTCCTTCCCAAGCTCTTGGCAGCGGTGAATTCGACGCGGGCGG CTTCAATGGCAAGGAATGACTGGTATCGCCTATCCCGTTCTCTCGAGGTG GGCGAAACTTGCACTGACTGCAGCTTGCCGCAACAACACTACGGATTACC AATTGGTCACTGCAAAGAGATTTGTGTTACGTTTTAGGTGTCCGAGGTAC CTTGACAGTATGCCGGAGCGCCCTCGCTCGGGCAGGATGATATCCCGTTC TCTTTGCAGTCTAGTTGCTGTTGTGCGGGGCGTTGTTGCTGCTGTGTAGC CACAACAAGAACTCACGACCACATCCAAAAAGCACTATACGCAGAGGGAT CGGTCTGTCTCTTCGACAGACGTCGATTTGTACGCACAAACGTTTTGCTT GTCTCTTCCGTTGTCAGCACGTGTGCGCACCGTTGCGAAACGTACATCGG GCCGAGCCGTAGGTTGTGAGAGAGGCACTGGTACAGCACGTCTCTGTAAG AGACGCCTCAGGACTTTTTTCCCGTGGTCCTATTCAGAGTACAATCGCAT TTACGTGCCCTGCGGTTCTGCCTCTTTCAACTGAATATCTTCACTCCGGG GTCGCTGAGAAAATTCCTATACCTTCGTTTCAACGGAAGGAGGGTTCAGT GGTTCCTTCCCTCAGGTGCACCAAAACTATGTGTAGAAAGAGGCACGAAG CTCAATAGGCTTGAACAGTAGGAAGCGTTCTTGCATTAGAGAGCAACATC AAAGTCGCCTCTCAGGATGCTCACACCACGTGACGACTACATCAGGTGCT CCGTGTCCCGAACGACACAGGCGAAGAGGTGTTCACCGGGGTACGAACGC CCATCAACAAGAAGTATGACTTCCGCTCGTTCTTCATCATCGGAGATAGG GAGCGTCTGTTCAGGCGCATCGACAAGAGGTTAGCGAGCGTTTATCCTCT CCCCTTTGGGCTATCCGGGTCTTCCCGCCTCTGCACCCTCCACCTCCTCA ACCTGTTGTGTTCGCAACCAGGGCCCTGTCAGCTATGCATGAGTGCCTCC CGTCGTGTTGTGGTGCTGCTGTTCGCCCCTGCGCGCGCCTGCTGAAGTGG AGTGCTGTCTCTAGTCTTTTATTCCCCCGACGAGGCGAAACCTATGTCAA TATTCATGTTTTGTAGCAGCTCTCGTTTGTGAAGTAGATGATGGCCGAGA ATTTCATGACCGTGATCTGCCCAAGCATATGTGGTCCTTGGAAGCTGTCA ATTTCGAAAAGAGCCGGCGGCACCATCTATCAATCTCGCGACCTGCTGCT GCATTCTGGATCAGCAAATAACATCTCCTCGTCACGCGTGCGATGAGTGG GCATGCATGGAAGCTCGCATTGCGATCCGAACCCGCTCGTCTTTCCCGCA CTGCCTGCCCCACGTAAAGGTGCGAAGAGATGCTGATTCGGGGGCTCCTC CCAGAAACCGCGGGTCTTCTCGTGAGAGGGATGCTGGACCCCGCTTCCCC CGCAGGCCGGGCGATCGGCTACCGGCAGGCCATCGACTTCCTGCTTCAAG AGGCAAGACTAGCGGACGGTAGCGCCGACGCCAACCGTGAAGCTACAGAC GTAACAGCAACAGCAGCGGCGGACCCCGAGACTAGGTTCCTGGAGTTCTT CCTCACGTTCGCCGCGAAGACGCGGCAGTACTCGGGCGAGCAGATGAAGT GGTTTCGATCGTCCAAGGGCCGTGATTTTTCATGGCAAGCTTGGGACCTC GGCGGGCCGATTGAAGAGGTACCACGCCGGGCAGGCAGCGGCGAGAAAAG AGGGGGCGGTGCAAAATCTCACGAAGCCGGAAGCTGCGCCAGAGCTGGCG ATGGGTGTGGCTGGCGAGACGTCGCGACATCCATAACGGAACAATTTGAG TTGCCCAGAGCGAGTTTCGACGAGGAGTTGGGGGGAGATTACCAAACCAT GTTGCGTAGCGAGAACCGACAGCGTGCGGGGGATATGAAGCGGTACGTCT CGGAGTTGTCGCTGCTCGGAGGCGGCGGGAACGAAAACGAAGCGTTTGGA AGATTGGTTCTCGAAACGAAAGAGCTGGCGGCGAGAATACGGCAGGCGCA GCCCGAGCGATTCCGAGATGGGGCTATTACGGAACGTCCGGCAATGGAGG TTCAGGGGTGGCACGCGGGCAACCGCTAGCAAGGACGGTCATTGGGAGTG CTGTTATAGTTGTTGCTGGTGTGTTCTCTCGGCCATCCACAATCTCAAAA TTGAGTTGCGTGC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1341:1379..5741-

>mRNA_E-siliculosus-1a_F_contig1341.2050.1 ID=mRNA_E-siliculosus-1a_F_contig1341.2050.1|Name=mRNA_E-siliculosus-1a_F_contig1341.2050.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3258bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1341:1379..5741- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGCTTGCGTGGCCCAAATCCTTGCCGCTCATTTTCATGGCGGCGGC
ACCACTCTTCCTTGTGTGGGCTCCGGCGAGAGCTCTGCTTGGAGCAGCTG
TTTCCAGGTTGCCATCAAGCACGACTCGGTTGCTCTCGTGCTCTCAGAAC
AAGGTGCGGCGGCGCCGGGGTGGTTCAACGGCCTCACGGACGCTCTCATG
CAGCAGCAGCACGGCGGTGAAGGATGGAGCCGCGAAAGTGATCGTTATCG
CAGATGCCGCTTGCGTGGCCCAAATCCTTGCCGCTCATTTTCATGGCGGC
GGCACCACTCTTCCTTGTGTGGGCTCCGGCGAGAGCTCTGCTTGGAGCAG
CTGTTTCCAGGTTGCCATCAAGCACGACTCGGTTGCTCTCGTGCTCTCAG
AACAAGGTGCGGCGGCGCCGGGGTGGTTCAACGGCCTCACGGACGCTCTC
ATGCAGCAGCAGCACGGCGGTGAAGGATGGAGCCGCGAAAGTGATCGTTA
TCGCAGGTCCCACGGCCACTGGGAAGTCATCCGTCGCGCTGGCCCTCTGC
AGGGATCTTGGTGGAGAGATAGTGTCCTGCGACTCGGTTCAAGTGTATAG
AGACGTCTTCATTGGCTGCAACAAGCCGTCACCACAGGAGATGAAAGAGG
TGCGCCATCACCTCGTGGACGTGGCCCCCCTCGACGAAACGTTCACAGCC
GGTCCCACGGCCACTGGGAAGTCATCCGTCGCGCTGGCCCTCTGCAGGGA
TCTTGGTGGAGAGATAGTGTCCTGCGACTCGGTTCAAGTGTATAGAGACG
TCTTCATTGGCTGCAACAAGCCGTCACCACAGGAGATGAAAGAGGTGCGC
CATCACCTCGTGGACGTGGCCCCCCTCGACGAAACGTTCACAGCCGGTGA
TTTCGTGCAACGAGCTGAAGCGGCAATAGACGACATCTTGTCGCGTGGAA
GAGTGCCGGTGGTGGTTGGGGGCACGATGATGTACCTCCATTGGCTTGTG
CATGGCAAACCGGACGCCCCCAAGAAGGTGATTTCGTGCAACGAGCTGAA
GCGGCAATAGACGACATCTTGTCGCGTGGAAGAGTGCCGGTGGTGGTTGG
GGGCACGATGATGTACCTCCATTGGCTTGTGCATGGCAAACCGGACGCCC
CCAAGAAGGATCCCGCGGTGGCGCAGGCGGTGGCGACGGAGCTACTCCCG
TTCCATGATCGGGGGGATTGGGATGGCGCTTTGGAGGATCCCGCGGTGGC
GCAGGCGGTGGCGACGGAGCTACTCCCGTTCCATGATCGGGGGGATTGGG
ATGGCGCTTTGGAGCTCTTGGCAGCGGTGAATTCGACGCGGGCGGCTTCA
ATGGCAAGGAATGACTGGTATCGCCTATCCCGTTCTCTCGAGCTCTTGGC
AGCGGTGAATTCGACGCGGGCGGCTTCAATGGCAAGGAATGACTGGTATC
GCCTATCCCGTTCTCTCGAGGTGCTCCGTGTCCCGAACGACACAGGCGAA
GAGGTGTTCACCGGGGTACGAACGCCCATCAACAAGAAGTATGACTTCCG
CTCGTTCTTCATCATCGGAGATAGGGAGCGTCTGTTCAGGCGCATCGACA
AGAGGTGCTCCGTGTCCCGAACGACACAGGCGAAGAGGTGTTCACCGGGG
TACGAACGCCCATCAACAAGAAGTATGACTTCCGCTCGTTCTTCATCATC
GGAGATAGGGAGCGTCTGTTCAGGCGCATCGACAAGAGGTGCGAAGAGAT
GCTGATTCGGGGGCTCCTCCCAGAAACCGCGGGTCTTCTCGTGAGAGGGA
TGCTGGACCCCGCTTCCCCCGCAGGCCGGGCGATCGGCTACCGGCAGGCC
ATCGACTTCCTGCTTCAAGAGGCAAGACTAGCGGACGGTAGCGCCGACGC
CAACCGTGAAGCTACAGACGTAACAGCAACAGCAGCGGCGGACCCCGAGA
CTAGGTTCCTGGAGTTCTTCCTCACGTTCGCCGCGAAGACGCGGCAGTAC
TCGGGCGAGCAGATGAAGTGGTTTCGATCGTCCAAGGGCCGTGATTTTTC
ATGGCAAGCTTGGGACCTCGGCGGGCCGATTGAAGAGGTACCACGCCGGG
CAGGCAGCGGCGAGAAAAGAGGGGGCGGTGCAAAATCTCACGAAGCCGGA
AGCTGCGCCAGAGCTGGCGATGGGTGTGGCTGGCGAGACGTCGCGACATC
CATAACGGAACAATTTGAGTTGCCCAGAGCGAGTTTCGACGAGGAGTTGG
GGGGAGATTACCAAACCATGTTGCGTAGCGAGAACCGACAGCGTGCGGGG
GATATGAAGCGGTACGTCTCGGAGTTGTCGCTGCTCGGAGGCGGCGGGAA
CGAAAACGAAGCGTTTGGAAGATTGGTTCTCGAAACGAAAGAGCTGGCGG
CGAGAATACGGCAGGCGCAGCCCGAGCGATTCCGAGATGGGGCTATTACG
GAACGTCCGGCAATGGAGGTTCAGGGGTGGCACGCGGGCAACCGCTAGGT
GCGAAGAGATGCTGATTCGGGGGCTCCTCCCAGAAACCGCGGGTCTTCTC
GTGAGAGGGATGCTGGACCCCGCTTCCCCCGCAGGCCGGGCGATCGGCTA
CCGGCAGGCCATCGACTTCCTGCTTCAAGAGGCAAGACTAGCGGACGGTA
GCGCCGACGCCAACCGTGAAGCTACAGACGTAACAGCAACAGCAGCGGCG
GACCCCGAGACTAGGTTCCTGGAGTTCTTCCTCACGTTCGCCGCGAAGAC
GCGGCAGTACTCGGGCGAGCAGATGAAGTGGTTTCGATCGTCCAAGGGCC
GTGATTTTTCATGGCAAGCTTGGGACCTCGGCGGGCCGATTGAAGAGGTA
CCACGCCGGGCAGGCAGCGGCGAGAAAAGAGGGGGCGGTGCAAAATCTCA
CGAAGCCGGAAGCTGCGCCAGAGCTGGCGATGGGTGTGGCTGGCGAGACG
TCGCGACATCCATAACGGAACAATTTGAGTTGCCCAGAGCGAGTTTCGAC
GAGGAGTTGGGGGGAGATTACCAAACCATGTTGCGTAGCGAGAACCGACA
GCGTGCGGGGGATATGAAGCGGTACGTCTCGGAGTTGTCGCTGCTCGGAG
GCGGCGGGAACGAAAACGAAGCGTTTGGAAGATTGGTTCTCGAAACGAAA
GAGCTGGCGGCGAGAATACGGCAGGCGCAGCCCGAGCGATTCCGAGATGG
GGCTATTACGGAACGTCCGGCAATGGAGGTTCAGGGGTGGCACGCGGGCA
ACCGCTAG
back to top