mRNA_E-siliculosus-1a_F_contig102.190.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig102.190.1 vs. uniprot
Match: D7FZ48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48_ECTSI) HSP 1 Score: 988 bits (2555), Expect = 0.000e+0 Identity = 554/582 (95.19%), Postives = 556/582 (95.53%), Query Frame = 1
Query: 802 IEDGGSRKMGGHRSTNSLGRMDDEDEEDSAGGGRCVSNKPSSQGGSPMVRGSSKHQEAPATFRRTSSRDSDGQVVPSSGLGPLSAVGIFKNPSSSSDGASNVPTRAVVPADDGSGRGAPGALPAVNPQQHRVVSNDAMQPPLSQKQHSPQPLXXXXXXXXXXXQHHFGRPAIAVGVAGGAGTGGAQWDDVVRRMTTPQGSGHSLEMGSEHSSNGSNGQPPVKAEYEPLVITSNNSVGTWNSNDSQVALLGPMPPPQSVQPPLRGWSFDSAQVADSGAGGSAVVDLSDVDGLFRGSAADGEAV-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQQQHEAMSDAKWANDGHLPMEKVVIEPSRNECDFEGRPTPPTDPKSGQPPIPSSTDRQCHLVFTGLNNTGQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSGEYQYVGPQLKVTYLRAAPPADAVEATPRPAGRRTASRAPIPFNSDGHQVSYSCVDYSCGDWFSDMCQSVFRSGATAHQPLHDDPNDLMNVDP 2544
IEDGGSRKMGGHRSTNSLGRMDDEDEEDSAGGGR VSNKPSSQG S MVRGSSKHQE PATFRRTSSRDSDGQVVPSSGLGPLSAVGIFKNPSSSSDG S VP RAVVPADDGSGRG PGALPAVNPQQHRVVSNDAMQPP SQKQHSPQPL QHHFGRPAIAVGVAGGA TGG QWDDVVRRMTTPQGSGHSLEMGSEHSSNGSNGQPPVKAEY+PLVITSNNSVGTWNSNDSQVALLGPMPPPQSVQPPLRGWSFDSAQVADSGAGGSAVVDLSDVDGLFRGSAADGEAV A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QQQHEAMSDAKWANDGHLPMEKVVIEPSRNECDFEGRPTPPTDPKSG+PPIPSSTDRQCHLVFTGLNNTGQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSGEYQYVGPQLKVTYLRAAPPADA EATPRPAGRRTASRAPIPFNSDGHQVSYSCVDYSCGDWFSDMCQSVFRSGATAHQPLHDDPNDLMNVDP
Sbjct: 6 IEDGGSRKMGGHRSTNSLGRMDDEDEEDSAGGGRFVSNKPSSQGDSLMVRGSSKHQEPPATFRRTSSRDSDGQVVPSSGLGPLSAVGIFKNPSSSSDGPSTVPPRAVVPADDGSGRGTPGALPAVNPQQHRVVSNDAMQPPSSQKQHSPQPLPQPFQQALQHQQHHFGRPAIAVGVAGGAVTGGTQWDDVVRRMTTPQGSGHSLEMGSEHSSNGSNGQPPVKAEYDPLVITSNNSVGTWNSNDSQVALLGPMPPPQSVQPPLRGWSFDSAQVADSGAGGSAVVDLSDVDGLFRGSAADGEAVSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQHEAMSDAKWANDGHLPMEKVVIEPSRNECDFEGRPTPPTDPKSGEPPIPSSTDRQCHLVFTGLNNTGQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSGEYQYVGPQLKVTYLRAAPPADAAEATPRPAGRRTASRAPIPFNSDGHQVSYSCVDYSCGDWFSDMCQSVFRSGATAHQPLHDDPNDLMNVDP 587
BLAST of mRNA_E-siliculosus-1a_F_contig102.190.1 vs. uniprot
Match: D7FZ47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ47_ECTSI) HSP 1 Score: 260 bits (664), Expect = 2.620e-76 Identity = 148/154 (96.10%), Postives = 151/154 (98.05%), Query Frame = 1
Query: 340 MAASAVVGTSTASIVPTGGAGXXXXXXXXXXXXGARTARRKQRCWLFQVDGVTSNASEVELLASIRERYTTVKRLVVRPAASSKDAVSAAEGSPRNVVVEVQFTGPQPSEGPGALLCDLLCGVSVDAKPVELPRGRKKRARTDATASMEGSDSD 801
MAASAVVG STASIVPTGGAG XXXXXXXXXXGARTARRKQRCWLFQVDGVTSNASEVELLASIRERYTTVKRLVVRPAA+SKDAV+AA+GSPRNVVVEVQFTGPQPSEGPGALLCDLLCGVSVDAKPVELPRGRKKRARTDATASMEGSDSD
Sbjct: 1 MAASAVVGASTASIVPTGGAGAVXXXXXXXXXXGARTARRKQRCWLFQVDGVTSNASEVELLASIRERYTTVKRLVVRPAATSKDAVAAADGSPRNVVVEVQFTGPQPSEGPGALLCDLLCGVSVDAKPVELPRGRKKRARTDATASMEGSDSD 154
BLAST of mRNA_E-siliculosus-1a_F_contig102.190.1 vs. uniprot
Match: D7G7N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N5_ECTSI) HSP 1 Score: 189 bits (480), Expect = 3.360e-49 Identity = 104/184 (56.52%), Postives = 131/184 (71.20%), Query Frame = 1
Query: 1852 EAMSDAKWAND-GHLPMEKVVIEPSRNECDFEGRPTPPTDPKSGQPPIPSSTD--RQCHLVFTGLNNTGQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDS-GEYQYVGPQLKVTYLRAAPPAD-AVEATPRPAGRRTASRAPI 2388
E+ DA+ D G LPM VV+E SR ECD EGRP T + PI +S+ R+ H+ FTGL TG DLR LRVTA FGVD+VH++ VTSPI++G +GRAY+ VFYP MQEIWPELY+TSNIR+VEVD+ +EI SD+ GE+++VGP LKV Y RA PP D + +PRP GR+TA R +
Sbjct: 88 ESSWDAELVGDFGRLPMGDVVVEVSRKECDLEGRPI--TRIGNSLTPITASSPDVRESHIEFTGLEKTGHDLRGLRVTAIFGVDAVHQIACVTSPIEVGPDGRAYSRVFYPGMQEIWPELYNTSNIRLVEVDVAIEILSDTCGEFRFVGPHLKVAYRRAIPPVDDGGDVSPRPTGRQTARRVAV 269
BLAST of mRNA_E-siliculosus-1a_F_contig102.190.1 vs. uniprot
Match: D7G7N4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N4_ECTSI) HSP 1 Score: 160 bits (406), Expect = 2.480e-41 Identity = 83/147 (56.46%), Postives = 105/147 (71.43%), Query Frame = 1
Query: 1876 ANDGHLPMEKVVIEPSRNECDFEGRPTPPTDPKSGQPPIPSST----DRQCHLVFTGLNNTGQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSG-EYQYVGPQLKV 2301
A + LP+E VV+ +R ECDFEGRP P G PSST R H+VFTGLN+TG D R LRVT FGVD+VH++ VTSPIQ+ ++GRAY+ VFYPS++E+WPELY T ++R VEVD+ VE+ SD G E++YVGP LKV
Sbjct: 37 AEERRLPIEGVVVALARKECDFEGRPLP----GGGSGMTPSSTVSSNGRDTHVVFTGLNDTGHDPRGLRVTVIFGVDAVHQIACVTSPIQVAADGRAYSRVFYPSLEEVWPELYYTVDVRAVEVDVAVEVLSDDGREFRYVGPHLKV 179
BLAST of mRNA_E-siliculosus-1a_F_contig102.190.1 vs. uniprot
Match: A0A6H5JDQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ6_9PHAE) HSP 1 Score: 168 bits (426), Expect = 4.000e-41 Identity = 88/162 (54.32%), Postives = 112/162 (69.14%), Query Frame = 1
Query: 1867 AKWANDGHLPMEKVVIEPSRNECDFEGRPTPPTDPKSGQPPIPSST----DRQCHLVFTGLNNTGQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSG-EYQYVGPQLKVTYLRAAPPADAV 2337
A A + LP+E VV+ +R ECDFEGRP P G PSST R H+VFTGL+NTG D R LRVT FGVD+VH++ VTSP+Q+ ++GRAY+ VFYPS++++WPELY T ++R VEVD+ VEI SD G E++YVGP LKV Y R PP A+
Sbjct: 212 AGMAEERRLPIEGVVVALARKECDFEGRPLP----GGGSGMTPSSTVSSNGRDTHVVFTGLHNTGHDPRGLRVTVIFGVDAVHQIACVTSPVQVAADGRAYSRVFYPSLEDVWPELYYTVDVRAVEVDVAVEILSDDGREFRYVGPHLKVGYTRITPPVSAM 369
BLAST of mRNA_E-siliculosus-1a_F_contig102.190.1 vs. uniprot
Match: A0A6H5JMY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMY9_9PHAE) HSP 1 Score: 132 bits (332), Expect = 8.700e-31 Identity = 75/129 (58.14%), Postives = 88/129 (68.22%), Query Frame = 1
Query: 1852 EAMSDAKWAND-GHLPMEKVVIEPSRNECDFEGRPTPPTDPKSGQPPIPSSTD-RQCHLVFTGLNNTGQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVE 2232
E DA+ D G LPM VV+E SR ECD EGRP S P SSTD R+ + FTGL TG DLR L VTA FGVD+VH++ VTSPI++G +GRA + VFYP MQEIWPELY+TSNIR+VE
Sbjct: 92 ECSWDAELVGDCGRLPMGDVVVEVSRKECDLEGRPIARIG-NSLTPITASSTDVRESLIEFTGLEKTGHDLRGLCVTAIFGVDAVHQIACVTSPIEVGPSGRACSRVFYPGMQEIWPELYNTSNIRLVE 219
BLAST of mRNA_E-siliculosus-1a_F_contig102.190.1 vs. uniprot
Match: D8LCJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ7_ECTSI) HSP 1 Score: 124 bits (310), Expect = 4.400e-25 Identity = 180/667 (26.99%), Postives = 258/667 (38.68%), Query Frame = 1
Query: 457 RKQRCWLFQVDGVT---SNASEVELLASIRERYTTVKRLVVRPAA----------------------SSKDAVSAAEGSPRNVVVEVQFTGPQPSEGPGALLCDLLCGVSVDAKPVELPRGRKKRARTDATASMEGSDSDIEDGGSRKMGG-HRSTNSLGRMDDEDEEDSAGGGRCVSNKPSSQGGSPMVRGSSKHQEAPATFRRTSSRDSDGQVVPSSGLGPLSAVGIFKNPSSSSDGASNVPTRAV--VPADDGSGRGAPGALP--AVNPQQHRVVSNDAMQPPLSQKQHSPQPLXXXXXXXXXXXQHHFGRPAIAVGVAGGAGTGGAQWDDVVRRMTTPQGSGHSLEMGSEHSSNGSNGQPPVKAEYEPLVITSNNSVGTWNSND--------SQVALLGPMP--PPQSVQPPLRGWS--FDSAQVADSGAGGSAVVDLSDVDGLFRGSAADGEAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQQQHEAMSDAKWANDGHLPMEKVVIEPSRNECDFEGRPTPPTDPKSGQP-----PIPSSTDRQCHLVFTGLNNTGQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSGEYQYVGPQLKVTYLRA 2316
RKQRCW F V GV+ + A + LA+ + YT L VRPA D+ S++ G+ R+VVVEV+F+GPQP++ P LL LL G SV A PV L RGR+ ++ A A E S R +RS L R + R V ++ S G + +E + D DG P G G L F S A T A V +D RG P AL AVN Q + R +A G+ GG G+ +++ + P S S+ + + G K PL + + + S D S ++LL P P Q+ + P G D+A + G G + G G + + +VA + + S+ + + ++ + +E R E DF+GR P +P P +P S + Q +L FTGL +TGQ LR L F V+S V P+Q G NGR Y + YPSM E+WPE+ STS +RVV+VD +V+IRS G++ ++G KVTY +A
Sbjct: 22 RKQRCWQFHVSGVSISDTKAQQEAALATFTDTYTATTWLTVRPATPRGPVGRRKKYGTLDETDRKTTEKGDSESSSSGT-RSVVVEVRFSGPQPADRPALLLRSLLKGESVAAHPVSLRRGRQTKSMKAAAAGDERS---------RIFANVNRSPGFLTRAEATRTAWCLLSSRSVMHRVSDPPRDEAGAGQGRAEEQGLLSDEDNDSD-DGLGNPFKGHGILFQA--FSRCMDLSRWAPANETNAGKGVAEEDRGSRGGPSALKSSAVNIDQGHAAGE--------------------AESGWNLKMGNDARDDLA-GLWGGGGS-----NNLSPLIVAPPRSPF-RRRASDTALDRVAGPALTKTAVSPLTVQAPPAARRTRSEDGLKDSTSESDLSLLLPNRNRPEQTHRAPWSGCDEDHDTAMKWEMGEGDVGSDASAAPRGCGNGLSDNSSSVAASARETG-------------------------------------DREKGPSERRAESAANV----IAVESLREEFDFDGRSYQPDNPPKDSPFASVFSVPCSDEAQ-YLAFTGLGHTGQPLRMLTARVQFSVNSERTAESVVGPLQAGGNGRVYGALRYPSMSELWPEICSTSAVRVVQVDTLVDIRSRQGDFLFLGNGPKVTYRQA 606
BLAST of mRNA_E-siliculosus-1a_F_contig102.190.1 vs. uniprot
Match: D8LCL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL1_ECTSI) HSP 1 Score: 112 bits (279), Expect = 1.520e-22 Identity = 61/136 (44.85%), Postives = 83/136 (61.03%), Query Frame = 1
Query: 1918 PSRNECDFEGR---PTPPTD-PKSGQPPIPSSTDRQCHLVFTGLNNTGQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSGEYQYVGPQLKVTYLR 2313
P + DFEGR P P+D P + +P S D Q HLVF GL TG+ L +L A F + K ++ P+Q GSNGR Y V YPSM E+WPE+Y+++ IRVV+VD++VE+RS G+ Y+ +LK Y R
Sbjct: 204 PVVEDFDFEGRTIEPNKPSDSPFAAAFSVPRSDDEQ-HLVFIGLGETGRPLPTLAARAQFSANPGRKAERMVGPLQAGSNGRVYGAVQYPSMAELWPEVYNSTAIRVVKVDMLVEVRSRYGDSLYLATELKAMYRR 338
BLAST of mRNA_E-siliculosus-1a_F_contig102.190.1 vs. uniprot
Match: A0A6H5JZ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ42_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.350e-21 Identity = 63/146 (43.15%), Postives = 86/146 (58.90%), Query Frame = 1
Query: 1897 MEKVVIEPSRNECDFEGRPTPPTDPKSGQP-----PIPSSTDRQCHLVFTGLNNTGQDLRSLRVTAHFGVDSVHKVGKVTSPIQL--GSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSGEYQYVGPQLKVTYLR 2313
++ V IE R + DFEGR P P SG P +P S D Q +LVF GL TG+ L +L A F + + ++ P+Q GSNGR Y V YPSM E+WPE+Y++ IRVV+VD++VE+RS SG+ Y+ +L Y R
Sbjct: 279 VDNVFIESLREDFDFEGRTIEPNKP-SGSPFAAALSVPRSDDEQ-YLVFIGLGETGRPLPALAARAQFSANPGRQAERMVGPLQARAGSNGRVYGAVQYPSMAELWPEVYNSKAIRVVKVDMLVEVRSRSGDSLYLATELMAMYRR 422
BLAST of mRNA_E-siliculosus-1a_F_contig102.190.1 vs. uniprot
Match: D7G6J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J1_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 8.780e-18 Identity = 52/140 (37.14%), Postives = 73/140 (52.14%), Query Frame = 1
Query: 1933 CDFEGR----PTPPTDPKSGQPPIPSSTDRQCHLVFTGLNNTGQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSGEYQYVGPQLKVTYLRAAPPADAVE 2340
CDF GR P P + S + Q HLVFTGL G L L T +F ++S + + P+Q+G + R Y V YP+M E+WPE+Y + VV+VD+ + +RS +Y G +LKVTY R D V+
Sbjct: 6 CDFHGRAVAHPQESVVPSALAACFMSGSLEQ-HLVFTGLVGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGHKTIRYPGTELKVTYRRTRMSPDVVD 144 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig102.190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig102.190.1 >prot_E-siliculosus-1a_F_contig102.190.1 ID=prot_E-siliculosus-1a_F_contig102.190.1|Name=mRNA_E-siliculosus-1a_F_contig102.190.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=736bp MAASAVVGTSTASIVPTGGAGAVAPAAAGAGAGGARTARRKQRCWLFQVDback to top mRNA from alignment at E-siliculosus-1a_F_contig102:50847..60998- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig102.190.1 ID=mRNA_E-siliculosus-1a_F_contig102.190.1|Name=mRNA_E-siliculosus-1a_F_contig102.190.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=10152bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig102:50847..60998- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig102:50847..60998- >mRNA_E-siliculosus-1a_F_contig102.190.1 ID=mRNA_E-siliculosus-1a_F_contig102.190.1|Name=mRNA_E-siliculosus-1a_F_contig102.190.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4416bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig102:50847..60998- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |