mRNA_E-siliculosus-1a_F_contig1310.1893.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1310.1893.1
Unique NamemRNA_E-siliculosus-1a_F_contig1310.1893.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1893.1 vs. uniprot
Match: D7FHS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS1_ECTSI)

HSP 1 Score: 410 bits (1054), Expect = 3.450e-135
Identity = 223/226 (98.67%), Postives = 224/226 (99.12%), Query Frame = 1 
Query:  442 MVTGAAIPADDPVVVKSLTSQVESSSITTRNGAIQREMQDAYRKLICANVERKLTLQDVASFSTFLVGVRVRLHEKGSNLRRRHSVLSSLLKHAPRARVQRIYSDLAAVEEQESALTKDVDLFNKLQQDLKESPAYKAMMEYGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFKMEDKRNEEQGGGGRGAGSVGGGNGFSPVFSASAGTGGRLRGGAGA 1119
            MVTGAAIPADDPVVVKSLTSQVESSSITTRNGAIQREMQDAYRKLICANVERKLTLQDVASFSTFLVGVRVRLHEKGSNLRRRHSVLSSLLKHAPRARVQRIYSDLAAVEEQESALTKDVDLFNKLQQDLKESPAYKAMMEYGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFKMEDKRNEEQGGGGRGAGSVGG NG SPVFSA+AGTGGRLRGGAGA
Sbjct:    1 MVTGAAIPADDPVVVKSLTSQVESSSITTRNGAIQREMQDAYRKLICANVERKLTLQDVASFSTFLVGVRVRLHEKGSNLRRRHSVLSSLLKHAPRARVQRIYSDLAAVEEQESALTKDVDLFNKLQQDLKESPAYKAMMEYGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFKMEDKRNEEQGGGGRGAGSVGGDNGLSPVFSAAAGTGGRLRGGAGA 226
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1893.1 vs. uniprot
Match: A0A6H5JIY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY2_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 3.830e-67
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 1 
Query:  742 RIYSDLAAVEEQESALTKDVDLFNKLQQDLKESPAYKAMMEYGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFKMEDKRNEEQGGGGRGAGSVGGGNGFSPVFSASAGTGGRLRGGAGA 1119
            RIYSDLAAVEEQESALTKDVDLFNKLQQDLKESPAYKAMMEYGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFKMEDKRNE+QGGGGRGAGSVGG NGFSPVFSA+AGTGGRLRGGAGA
Sbjct:    3 RIYSDLAAVEEQESALTKDVDLFNKLQQDLKESPAYKAMMEYGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFKMEDKRNEKQGGGGRGAGSVGGDNGFSPVFSAAAGTGGRLRGGAGA 128
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1893.1 vs. uniprot
Match: A0A176VK39_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176VK39_MARPO)

HSP 1 Score: 80.5 bits (197), Expect = 8.280e-12
Identity = 48/165 (29.09%), Postives = 94/165 (56.97%), Query Frame = 1 
Query:  523 TTRNGAIQREMQDAYRKLICANVERKLTLQDVASFSTFLVGVRVRLHEKGSNLRRRHSVLSSLLKHAPRARVQRIYSDLAAVEEQESALTKDVDLFNKLQQDLKESPAYKAMMEYGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFKMEDKRNEEQGG 1017
            T+    +QR++++ Y +L+ +NV + LTL  V  F+T LV  +  L +K   ++RR ++  SLL  A ++   R+   +  +E ++  L +D  ++N+LQ+ LK SPAY+ M+EYG++   +  +   + +     ++E    +S +++LA+ K +   + E GG
Sbjct:  427 TSSGSMVQRKIKEQYDELVRSNVAKSLTLAQVGRFTTCLVEAKSSLQQKSDTIQRRFTIAKSLLSKADKSSFDRLCGQIYGLEIEQKKLEEDTVVYNRLQEQLKLSPAYQKMLEYGRTHFELQPNTGQLIEKVDSEDME----ISFEELLAQEKKDSFWSAENGG 587
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1893.1 vs. uniprot
Match: A0A2R6XWC9_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XWC9_MARPO)

HSP 1 Score: 77.8 bits (190), Expect = 5.920e-11
Identity = 40/118 (33.90%), Postives = 73/118 (61.86%), Query Frame = 1 
Query:  523 TTRNGAIQREMQDAYRKLICANVERKLTLQDVASFSTFLVGVRVRLHEKGSNLRRRHSVLSSLLKHAPRARVQRIYSDLAAVEEQESALTKDVDLFNKLQQDLKESPAYKAMMEYGQS 876
            T+    +QR++++ Y +L+ +NV + LTL  V  F+T LV  +  L +K   ++RR ++  SLL  A ++   R+   +  +E ++  L +D  ++N+LQ+ LK SPAY+ M+EYG++
Sbjct:  707 TSSGSMVQRKIKEQYDELVRSNVAKSLTLAQVGRFTTCLVEAKSSLQQKSDTIQRRFTIAKSLLSKADKSSFDRLCGQIYGLEIEQKKLEEDTVVYNRLQEQLKLSPAYQKMLEYGRT 824
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1893.1 vs. uniprot
Match: A0A7I4E987_PHYPA (Uncharacterized protein n=7 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4E987_PHYPA)

HSP 1 Score: 74.7 bits (182), Expect = 4.840e-10
Identity = 39/118 (33.05%), Postives = 70/118 (59.32%), Query Frame = 1 
Query:  523 TTRNGAIQREMQDAYRKLICANVERKLTLQDVASFSTFLVGVRVRLHEKGSNLRRRHSVLSSLLKHAPRARVQRIYSDLAAVEEQESALTKDVDLFNKLQQDLKESPAYKAMMEYGQS 876
            T     +QR++++ Y +L+ +N  + LTL  V  F+T LV  +  L +K   ++RR ++  SLL  A ++   R+   +  +E ++  L +D  ++N+LQ+ LK SPAY  M+EYG++
Sbjct:  584 TYSGSMVQRKIKEQYDELVRSNAAKTLTLAQVGRFTTCLVETKSALQQKSDTIQRRFTIAKSLLSKADKSSFDRLCGQIYGLENEQKKLEEDTVVYNRLQEQLKLSPAYLKMLEYGRA 701
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1893.1 vs. uniprot
Match: A0A1D1Z5Y6_9ARAE (Chaperone protein DnaK (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z5Y6_9ARAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.600e-8
Identity = 36/113 (31.86%), Postives = 64/113 (56.64%), Query Frame = 1 
Query:  532 NGAIQREMQDAYRKLICANVERKLTLQDVASFSTFLVGVRVRLHEKGSNLRRRHSVLSSLLKHAPRARVQRIYSDLAAVEEQESALTKDVDLFNKLQQDLKESPAYKAMMEYG 870
            + A QR ++  Y +L+ +N  + LT+  V  F+  L+  R  L  K   ++R+ ++  +LL  A R+   R+   +  +E ++  L +D  ++N+LQ+ LK SPAYK M+E G
Sbjct:   35 SSATQRRIKQQYDQLVKSNQAKALTMAQVGEFANCLIEARNELQHKSEVIQRKFTITKALLFKADRSSFDRLCQQIYKLEAEQKRLEEDAVVYNRLQEQLKLSPAYKTMLEIG 147
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1893.1 vs. uniprot
Match: A0A3S3NYD6_9MAGN (Uncharacterized protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3NYD6_9MAGN)

HSP 1 Score: 68.6 bits (166), Expect = 1.610e-8
Identity = 37/114 (32.46%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:  523 TTRNGAIQREMQDAYRKLICANVERKLTLQDVASFSTFLVGVRVRLHEKGSNLRRRHSVLSSLLKHAPRARVQRIYSDLAAVEEQESALTKDVDLFNKLQQDLKESPAYKAMME 864
            T+   A QR+++  Y +L+ +N  + LT+  V  F+  L+  R  L  K   ++R+ ++  +LL  A R+   R+Y  +  +E ++  L +D  ++N+LQ+ LK SPAYK M+E
Sbjct:  204 TSAASATQRKIKQHYDQLVKSNDAKALTMAQVGQFANCLIEARNELQHKSEIIQRKFTITKALLFKADRSSFDRLYQQIYKLEAEQKRLEEDASVYNRLQEQLKLSPAYKQMLE 317
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1893.1 vs. uniprot
Match: A0A1U7YW96_NELNU (uncharacterized protein LOC104586621 n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7YW96_NELNU)

HSP 1 Score: 67.8 bits (164), Expect = 2.840e-8
Identity = 38/117 (32.48%), Postives = 67/117 (57.26%), Query Frame = 1 
Query:  523 TTRNGAIQREMQDAYRKLICANVERKLTLQDVASFSTFLVGVRVRLHEKGSNLRRRHSVLSSLLKHAPRARVQRIYSDLAAVEEQESALTKDVDLFNKLQQDLKESPAYKAMMEYGQ 873
            T+ +   QR+++  Y +L+ +N  + LTL  V  F+  L+  R  L  K   ++R+ ++  +LL  A R+   R+   +  +E ++  L +D  ++N+LQQ LK SPAYK M+E G+
Sbjct:  203 TSSSSVTQRKIKQQYDQLVKSNDSKALTLAQVCQFANCLIEARNELKHKSEIIQRKFTITKALLFKADRSSFDRLCQQMYKLEAEQKRLEEDALVYNRLQQQLKLSPAYKKMLEIGE 319
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1893.1 vs. uniprot
Match: A0A835DJU0_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835DJU0_9MAGN)

HSP 1 Score: 67.4 bits (163), Expect = 3.740e-8
Identity = 37/114 (32.46%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:  523 TTRNGAIQREMQDAYRKLICANVERKLTLQDVASFSTFLVGVRVRLHEKGSNLRRRHSVLSSLLKHAPRARVQRIYSDLAAVEEQESALTKDVDLFNKLQQDLKESPAYKAMME 864
            T+ + A QR+++  Y +L  ++    LTL  V  F+  L+  +  L  K   ++R+ ++  +LL  A R+   R+Y  ++ +E ++  L +D  ++N+LQQ LK SPAYK M+E
Sbjct:  201 TSSSSATQRKIKQQYDQLKKSHESNGLTLAQVGQFANCLIEAKNELQHKSEIIQRKFTITKALLIKANRSSFDRLYQQISKLESEQKRLEEDASVYNRLQQQLKLSPAYKKMLE 314
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1893.1 vs. uniprot
Match: B8LR74_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LR74_PICSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.960e-8
Identity = 41/152 (26.97%), Postives = 83/152 (54.61%), Query Frame = 1 
Query:  529 RNGAIQREMQDAYRKLICANVERKLTLQDVASFSTFLVGVRVRLHEKGSNLRRRHSVLSSLLKHAPRARVQRIYSDLAAVEEQESALTKDVDLFNKLQQDLKESPAYKAMMEYGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFK 984
            R   +QR ++  Y +L+ +N    LTL  V  F+  LV  +  L +K   ++R+ ++  SLL  A ++   R+   +  +E ++  L +D  ++N+LQ+ LK SP+Y+ M+EYG      +++   + + ++  + E    +S +++LA+ K
Sbjct:  259 RGSVMQRRIKQHYDELMHSNTAGPLTLAQVGRFTNCLVEAKAALLQKSETIQRKFTIAKSLLVKADKSSFDRLCGQIYRLETEQKRLEEDTKVYNRLQEQLKISPSYQKMLEYGHGHFQSHLNTGQLLEKSEAEDAE----ISFEELLAQEK 406
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FHS1_ECTSI3.450e-13598.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIY2_9PHAE3.830e-6797.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A176VK39_MARPO8.280e-1229.09Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A2R6XWC9_MARPO5.920e-1133.90Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A7I4E987_PHYPA4.840e-1033.05Uncharacterized protein n=7 Tax=Physcomitrium pate... [more]
A0A1D1Z5Y6_9ARAE1.600e-831.86Chaperone protein DnaK (Fragment) n=1 Tax=Anthuriu... [more]
A0A3S3NYD6_9MAGN1.610e-832.46Uncharacterized protein n=1 Tax=Cinnamomum micrant... [more]
A0A1U7YW96_NELNU2.840e-832.48uncharacterized protein LOC104586621 n=2 Tax=Nelum... [more]
A0A835DJU0_9MAGN3.740e-832.46Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
B8LR74_PICSI4.960e-826.97Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1310contigE-siliculosus-1a_F_contig1310:11988..18920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1089
Model size2434
Exons6
Ec32 orthologEc-07_006560.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.I
EggNOG OGsCOG2084@1,KOG0409@2759
EggNOG free text desc.3hydroxyisobutyrate dehydrogenase
Seed eggNOG ortholog2880.D7FHS1
Seed ortholog evalue2.8e-114
Seed ortholog score418.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1310.1893.1prot_E-siliculosus-1a_F_contig1310.1893.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1310 12102..17689 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927833.489818-UTR-E-siliculosus-1a_F_contig1310:11987..121011622927833.489818-UTR-E-siliculosus-1a_F_contig1310:11987..12101Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1310 11988..12101 +
1696318699.8061757-UTR-E-siliculosus-1a_F_contig1310:11987..121011696318699.8061757-UTR-E-siliculosus-1a_F_contig1310:11987..12101Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1310 11988..12101 +
1622927833.8095143-UTR-E-siliculosus-1a_F_contig1310:17689..189201622927833.8095143-UTR-E-siliculosus-1a_F_contig1310:17689..18920Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1310 17690..18920 +
1696318699.863032-UTR-E-siliculosus-1a_F_contig1310:17689..189201696318699.863032-UTR-E-siliculosus-1a_F_contig1310:17689..18920Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1310 17690..18920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927833.5064726-CDS-E-siliculosus-1a_F_contig1310:12101..124911622927833.5064726-CDS-E-siliculosus-1a_F_contig1310:12101..12491Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 12102..12491 +
1696318699.8158872-CDS-E-siliculosus-1a_F_contig1310:12101..124911696318699.8158872-CDS-E-siliculosus-1a_F_contig1310:12101..12491Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 12102..12491 +
1622927833.6096451-CDS-E-siliculosus-1a_F_contig1310:14802..148981622927833.6096451-CDS-E-siliculosus-1a_F_contig1310:14802..14898Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 14803..14898 +
1696318699.8228874-CDS-E-siliculosus-1a_F_contig1310:14802..148981696318699.8228874-CDS-E-siliculosus-1a_F_contig1310:14802..14898Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 14803..14898 +
1622927833.7485936-CDS-E-siliculosus-1a_F_contig1310:15150..152931622927833.7485936-CDS-E-siliculosus-1a_F_contig1310:15150..15293Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 15151..15293 +
1696318699.83003-CDS-E-siliculosus-1a_F_contig1310:15150..152931696318699.83003-CDS-E-siliculosus-1a_F_contig1310:15150..15293Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 15151..15293 +
1622927833.7692027-CDS-E-siliculosus-1a_F_contig1310:16023..161311622927833.7692027-CDS-E-siliculosus-1a_F_contig1310:16023..16131Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 16024..16131 +
1696318699.837813-CDS-E-siliculosus-1a_F_contig1310:16023..161311696318699.837813-CDS-E-siliculosus-1a_F_contig1310:16023..16131Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 16024..16131 +
1622927833.7822177-CDS-E-siliculosus-1a_F_contig1310:16760..168541622927833.7822177-CDS-E-siliculosus-1a_F_contig1310:16760..16854Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 16761..16854 +
1696318699.8457909-CDS-E-siliculosus-1a_F_contig1310:16760..168541696318699.8457909-CDS-E-siliculosus-1a_F_contig1310:16760..16854Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 16761..16854 +
1622927833.7938514-CDS-E-siliculosus-1a_F_contig1310:17431..176891622927833.7938514-CDS-E-siliculosus-1a_F_contig1310:17431..17689Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 17432..17689 +
1696318699.8541076-CDS-E-siliculosus-1a_F_contig1310:17431..176891696318699.8541076-CDS-E-siliculosus-1a_F_contig1310:17431..17689Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 17432..17689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1310.1893.1

>prot_E-siliculosus-1a_F_contig1310.1893.1 ID=prot_E-siliculosus-1a_F_contig1310.1893.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1893.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=363bp
MLHVQGTTGMARETFGPEPSPSIWKPEDLGAAAAAGGVDLHSTTSEGRLS
GEPGYGWGLETATKPSAPASTAPEANEQRRQQRQQQQRPAGTAGSGFGGR
PKNVVPPPSMVTGAAIPADDPVVVKSLTSQVESSSITTRNGAIQREMQDA
YRKLICANVERKLTLQDVASFSTFLVGVRVRLHEKGSNLRRRHSVLSSLL
KHAPRARVQRIYSDLAAVEEQESALTKDVDLFNKLQQDLKESPAYKAMME
YGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFKMEDKRNEEQG
GGGRGAGSVGGGNGFSPVFSASAGTGGRLRGGAGAGGVGKAGDAAAPQKN
KKGKKGKKDRRR*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1310:11988..18920+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1310.1893.1 ID=mRNA_E-siliculosus-1a_F_contig1310.1893.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1893.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6933bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1310:11988..18920+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGCGTGGAAACACAACATCGCAACAAGCACACACGAATACACACACTAC
GCAGCAACAGCGGCGTGGGCAGGAGTGAAATTACCCAAGACCGTCCTCCC
GTTTCAACCCGCTGATGCTTCACGTCCAAGGGACAACGGGCATGGCGCGA
GAGACGTTCGGGCCTGAGCCTTCCCCGTCTATCTGGAAGCCAGAAGACCT
TGGGGCAGCAGCGGCAGCAGGAGGAGTAGACCTGCACTCCACGACCTCCG
AAGGACGTTTGTCCGGAGAGCCAGGGTACGGATGGGGGTTAGAGACTGCT
ACCAAGCCTTCGGCACCGGCATCGACAGCACCTGAGGCCAACGAGCAGCG
GCGGCAACAGCGGCAGCAGCAGCAAAGGCCTGCTGGTACTGCTGGTTCGG
GCTTCGGAGGGAGACCGAAAAACGTGGTGCCACCACCTTCAATGGTGACG
GGAGCGGCGATACCCGCAGACGACCCGGTGGTTGTTAAGAGCTTGACGTC
ACAGGTGCGCGCTGATGCTGTGTGCGCGCCGTTGCTGTGAGAGTGTGGTT
CGCACAATACCACTCGTTGTTGTGCAGCAGCATGCTTTAGTTTGTGAGAG
ATTTCCCGAAAAAAAACAATACGTGCCCGTGTCGTATGTACGCTAGTTCG
TATGCATATGCAGTTGTACTGCTGAAGTCTACGATGTGATGCGGTGCGAA
CAAAAACGGTGTTTGTACTTGTATTTTTTCTTTAAAAAACGCCCCGGGTT
TAGCCGCGGGCAACGAAGAAACGCCGCTCGTGAAACAACGTACAAAGAGA
GAGCGCGAAATCCGAGGATATTTTGGAATTCTGGGGACACCTTGCAATTC
GACTGGCTCTACTTTTCAGGTTGTCATGCGGGGGTGGCCTCTCGTTGGTC
CGGCACTGCTGTGTGTGATGTCCGGCTTCATCATGTCTCATCTCTTTTTT
CTCGAACATACGTAGTCTGGGAGACACGTACGCGTATGCATACGTCTAGA
AGTCGAGATACCCATTACCAGTAGACTATAATAGGCAGCGCGTGGTTTGG
TTTTCGGCTTCCATGCAATAATGGGGGACTGTCGCCATAAACAGGACGGA
CACACCTACACGCCAGCTACATTAGGAACTGTCTGCAACAAACCATCATG
GAATCGTGGGGTTCATTCAGGTGGCAACCTTGCACCTTTTGCACTAAAAA
AAAATGCTTGTGACGGACGTCGGTGGACTCACTCGCACGTTTGGCTTCAT
TTTTTTCCGACAATATCCATGTCTGCACGTGTCCATATGCACATGGTTAC
ATTCGTGGAACGCGATTGTTTGCGTACGGACTACTTCTTACGACAACGAG
GGCAAGCAACGGCTGAGTCCTTCTCCGCTTCACAAAAGAAAAAGGCAGTC
ATCGCAGAAGGAAATCGGAAAGCACCTCATCAACTCCCGTGTGGCAATCC
TCCTGTGCTACCTCGGGCTGATACGTCCAGAATATACGCCGAAAACTGGT
GTTCAGACTTTTGATTCCAAAATGAATGACACGACACAACGCACGCTCCG
GCCGTCTCTCCGTAACTCCCCTTTTCTTGTCCTTGTAAGGGGGCGAGAAA
CGCTCAAGTATAGCGCCAAGTGTCAGCACCCGTGACAACCGATGTTGTGC
AATGCAGTCAATAGCAGTCAACAAGGTGTTTGCACTTGCAAAGCCATGTC
CCAATACTACAGTACGCCAGGCGCTGCCCAAGCAGCTTGTGTTTCGCGTC
GTAGTCTGCCGGAAGTGACCTCTGGCGATCGAGCGGGGGGCTCGTGTGTG
CGTTATGTCGCCGCAGTTCATAATCCTCCGCCTACCTTTGTAGTGAAAAA
TGCCAAGCATCGCAGAAACAGCCGGTTGTTGCTTCCCTCCCCCCGATGTG
TGGCATTTCGACCTCTTCGGTCGATCGGGATCCTATGTTGTAGATTCAGA
GGGGCTCCGAGACATGGCTTTCTGTTCAAAGATTGGTCTAATTGTTTATG
TGGGAAGGTTTTTTGTTGAGAAATACATGAGCCCTTCTCCCCAACAGCCG
CTACATCGCTGTTTTCATTTGTGTGCAATTGGCACGCCACAATATTTGTA
TCGAGGGGGATGGTGCAGGGTCGATGTGCCTTGTCTGCCTTGTTTTGAAA
CGGACAATAACGCCATTGTTGAAGCGGCGGTCACTGTATTCGCAAGTGGG
AGCTTCTCCCGGTGTTTTGGTTTTCATCTGTCGGACGCCTTTGGGAAAGG
GTCCTTCTGTGTGACCACGGGTTGGAGTACGCGGCACAAATGCTGTAAGC
GCTGATTTGAAGGGATGACGACCAAAAAAGAAGACGCCTTGACGCGGAGT
ATTGTACTATCCAAAACGCAATGAAAATCGAAATGTTTCAATTTGGGACC
TGAGTAATTTGTTCTGCATGCATGTAAGTAGCAGAGAGGACCAAGATGTT
TGTGCGTGTCCGGGCGAGGAGCGTGTCTGTGTTGAGGGAGAGATGTTCAC
TCACACGGGACGTCGGTGTGGTACAATATCGCACTGGAGTTGTCAAGGGG
GGATCTGTGGGTAGGACCCGGTATGGCGCTTACCGTGCTGCCCAAGTACA
AATACAACACAGCCTGGTTATAGGGAAATTGACTTCCTTCCCGATTGATT
TCGGGAATCCGCACCTGCTGTCCATGGCATGATTCGCCGCAAGAAGAGGT
AGCTGTCGGGAGATGCAAGGGGGCAAGCGCTGTTGCCCCGCTGTTCACAT
TTTTGTTTTCTCCAAGCCGGGACCAACGCTTGCGGTTGTTTGGCAACGTG
GTGCTCGACATGCAGGTGGAATCGTCGTCTATTACAACCCGTAACGGGGC
TATCCAGCGTGAGATGCAGGACGCCTACCGGAAGCTCATCTGCGCCAACG
TCGAGCGTAAGGTATGCGTGTGTCTCTTGAATGGTTATTGCATCGACCGC
CTACCCGGCTGTCCAGTGAAGAGACATCTGTCTCACAGCGGTGCGAAGAA
AGCATGTGTGTGTTGGTTGGACATGTTGGTGTGATGTTTTTCTTTTCGGT
GGCATCGACCCAAGGCGTCTCTGGACAAGGAAACGGACAACGGCTCAAGC
AATCAGCAAGGGACTGAGGACCCCTCCCCCCCCCCCTATCTCCCACCGTA
CACGCCGTAACAGCTGACACTGCAAGATGTGGCTTCGTTCTCGACCTTCC
TGGTCGGGGTACGAGTGAGGCTACACGAGAAGGGCTCTAACCTCCGGAGG
CGCCACAGCGTCCTGTCCTCCTTGCTAAAGCACGCACCTCGCGCACGCGT
GCAGCGGTGAGCCTGGGTTTTTGTTACTGTCGTGGTTGTTGCTGTTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTGACGGTAGTGGTGAG
TCGGCCTCGGGATCTTCCGTTGTTGCTACTCTTGTTGGTGTAGTAGTAGT
TGTTGTTGTTGGTTGCGTGCTGCGGTGGTGTTGCCCGACCTCACGGAGGA
CCGTTGTTGCTACTATTGTTGGTGTTGAAGTAGGGTAGTTATTTTGTTGT
TGGTTGCGTGCTGCGGTACCATTGGCCGACCTTCGGAGGACCGTTCTTGT
TGTTCTTGTTGGTGTTGTCGTTGGTGGTGGCGGCTGTTGTTGACGTTGGT
ACCGATCACGGTTGTCTTTCTCCATGTGCCTGACATTGAAGAAAAGTCTT
CCCTCGCTTCGGTCTTCCTGCTACGGTAGTATTCTGTTTTGTGGTCGGAC
AGCCGTGTTCGCCGTAACCTGTGCTGTTGTGCTACAGTACGGTCCCGCAG
TTGAGAAATATTTTGTCAAGAAACCGAGGCTCAAATTGTCATCAAGAGAA
AAAACGGTTGAGAAACCCAGCTCAGCGGCGAATCCTAACGAAATTCAATA
TAACATAATGCGCTTGACAGCAGTGGCGATGAAAACAGAATCTGGCGCTT
GACCCGATATTGACGTTTCTTATCTCCGGGCCCGAACTGTAGTGGTCTCT
TACTTTTGTTGACCCTCTGTTGTGGACGTTCTGCAGAATCTACTCGGACC
TCGCTGCTGTGGAGGAGCAGGAATCCGCCCTTACCAAGGACGTCGACCTC
TTTAACAAGCTGCAACAAGATTTGAAGGAATCCCCGGCCTACAAGTGAGC
GATGAAGAAAAAAATTCTTTGAGCAGTTGGCAAATGCATCCGTGAGTATG
AGCGCATGTCTTGAAACATCCGGGGAGCTCGGTGGGAGCAAGCATGCGGA
TCGTCAGTTTTGCTTCTACAAGATTTTTCAGATTTTTTTGTAGCTGTTTC
AAGTTCCTTGCGGTTCGACGAAAATGTCGCGAGCCAGGAGAGCACGGTCT
GTTGGAACGGGTTGACGCAGTCATGGTTCAAGAGGAACATTGTGAGCATC
TTTGCCTGGCTGTGGGTGCAGGCTCTCTTCGCGTAACGTGGCACAAGTTA
CGGTAGGTTGACATGTTACTGTAGGTGGTAAATCCTGCCGTAACGCAATT
CATTGGCGGGGTTGGACCGTTGCCCGTCGAAGGGTGGTTGGCGTGGGTGA
GTCAAGCACATGCTACGGCTTGTGCACACCTGTTTTTCGAGCAATCAAGC
AGGCGTACAGACGATGTCGTACACGCAAAGTAGCAACTGCGACCTTTTCA
CGAGCCCGACTGTTGTTGTCTCTTGGTCTCAATCGTCATTTCCCTCGTGC
TACTGTCATGATCGCTACGGCGATTTATTCGACGAATCGTCGTTGTTTTG
GCGAAATACGTGCACCTAAACAGGGCGATGATGGAGTACGGCCAGTCGAG
CGGTATGGTAAACGTGGACGGGACGATGATGCCGGATCCCACCAAACACC
CGGAGCTGGAAGCCATGGTGAGAGCTGGGACAAGGCGGAATGTTGCGGCG
AACGTACGCATGAGCTTGTTGGATTGAGGAGCGTCGAGAGCTTTGCGGGA
TTGTAGGCACTTCGTCCGGTGTGAGACACCGGTTTTGAATACCCTGCAAG
TGTCGTGGCGCGTTTTGCAACACCTCTTTGATAAAACACGTCCGGCGGGA
AGCTACGGCGGTTACTACGTGTGTTAGACGATATGCACGTGCCCAGCCTT
CGGGCATGGACGCTTGAAGTACTTGTGAGATGGCTGTGGCTATGGAGCCA
GATGGCTTGTTCGTTTGAACAACAAATTTCGCGAGGCGAGCGGTGGAGCG
CGGGCAAGTAAGTAAAATCGTCACAGGGGGGGGTGGAGAGAGAGGAAGAT
GGACGCCTGATAGAGGGTGCGATGCGGCGGCGCGAACCCACACAAGACGC
ACGCAGCCCCGCCGTCCTTTTTGTCTTGCTGCTTTTTTTGCACACCTGTT
AAATGTCAACGATCTCCAGCATGGCAAACCAACATACCCCTCGCTCCCTG
CGCTACTGTTCCCTTGACGAACCCCCCTGGCATCCGACGAGAAGGCGTCC
ATGTCGGTGAAGGACATGCTGGCGGAGTTCAAGATGGAGGACAAGCGTAA
CGAGGAGCAAGGCGGCGGTGGCCGCGGCGCTGGCTCCGTCGGGGGTGGAA
ACGGGTTCAGCCCCGTCTTTTCGGCGTCAGCGGGGACTGGGGGTCGGTTA
AGGGGCGGGGCTGGCGCTGGGGGGGTGGGAAAGGCGGGGGATGCGGCGGC
CCCGCAAAAAAACAAGAAGGGGAAGAAGGGGAAGAAAGATAGAAGACGGT
AGTACAGCCGGTGGGTGGGTGACGCCCGTGGTCGTGGCGATGCCCATTGT
GTGTGCGTTTTGGTACCGGTGCGTTTATTCCGATTAGGGGGGCATCATGA
ACTCTTAGGTTTGTGTCCGGCTTTTTCATATGTGGGGGCGTCGTAAACTC
CAGGGGTTGTGTCCAGCTTTTTTATATTTGTGTGGTGTGTGGTGGTAGTC
TGCGCTCTCGCGGACGGGGGGTGCCGCCGATGGGAAGAAGGTCGTTCATG
GGTGCATGTTGTTCATTTCGCGGTTGGTGTTCTTCGTTTCTACGCGTGAG
TTCTCGACTTCTCCCCGCACGCTCTTATGATGTTTTTTTTACCGCGAGTT
AACTTGTGTAGTAGCTGTGTACTGCTGTGGATGGCGGGAGGGAGGGGGGG
ACATAGACCATCACGACTCATGACGCTCGAGAGTTATAGGCTGTGGGCTC
TTCTTGTGTCCGTACGAAGGCGTCGCGGAAGGCGTCTGTTGGTTCTTTGT
GCTCGGCGACGTAGCCGCTACAGGATTGGAGTGCGTCCGCTCCAAGGCGG
ATCTCGGCACCGGGCCGCCACATCGCCCATTGTATGGATGACATGCTTCG
AGGCTCGAAGCTGAGTGGGCTGATTTCGCGCGTCGGTTCGTGTAAGTCTT
GTCGCTCTTGCCCGTTTTGCGGTTCTATCAAGTGTTGGGGGGGAATCTGT
CGCGGGGTGGCTATTAGTCAGCGGGTTGATTAACGCGACCTACTGCGGTC
GTGCTCTTTCGCCGTACAGCCACGCAGCAATGTTAATACTCGAGGTAGCT
CTTTCAGTTGGCTAGCAAGGAGAACCTGGCTCTAGGTGTGTTTGTTTTTG
CCTGGAGGAGGGCGCTGCAGGTATAGGGTCGTGTTTGCACGCGGGGAGGG
TAAGGTAGAGCGGACAGCTCCCGGCGGTGCATATTATCACAAGCACACAG
CAGTTGTGTAGCTCGATTTCGTAGAAACAGCGATTGCACGGTTAAGCGCG
TTTGTTGCCGGTATGACTACGGAATCTACGTGTTTCCATTTGATGTCACA
TGTGTAGTTGTTTGACCTTTGGTAGAGGGCACTACTACTGTAGGTGCATT
CTCCCTGCGTTCGCTGTGCAATTTTTGGGAGGTGACGGCTTCCTATCACC
TACAGCGAGAAGGGTGGGAATCGCTGCGCTGCTGTCGATAACGTCATGTG
GGCCTAGCTAATTACGAACCGGACCTTTGTGAT
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1310:11988..18920+

>mRNA_E-siliculosus-1a_F_contig1310.1893.1 ID=mRNA_E-siliculosus-1a_F_contig1310.1893.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1893.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2178bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1310:11988..18920+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTTCACGTCCAAGGGACAACGGGCATGGCGCGAGAGACGTTCGGGCC
TGAGCCTTCCCCGTCTATCTGGAAGCCAGAAGACCTTGGGGCAGCAGCGG
CAGCAGGAGGAGTAGACCTGCACTCCACGACCTCCGAAGGACGTTTGTCC
GGAGAGCCAGGGTACGGATGGGGGTTAGAGACTGCTACCAAGCCTTCGGC
ACCGGCATCGACAGCACCTGAGGCCAACGAGCAGCGGCGGCAACAGCGGC
AGCAGCAGCAAAGGCCTGCTGGTACTGCTGGTTCGGGCTTCGGAGGGAGA
CCGAAAAACGTGGTGCCACCACCTTCAATGGTGACGGGAGCGGCGATACC
CGCAGACGACCCGGTGGTTGTTAAGAGCTTGACGTCACAGATGCTTCACG
TCCAAGGGACAACGGGCATGGCGCGAGAGACGTTCGGGCCTGAGCCTTCC
CCGTCTATCTGGAAGCCAGAAGACCTTGGGGCAGCAGCGGCAGCAGGAGG
AGTAGACCTGCACTCCACGACCTCCGAAGGACGTTTGTCCGGAGAGCCAG
GGTACGGATGGGGGTTAGAGACTGCTACCAAGCCTTCGGCACCGGCATCG
ACAGCACCTGAGGCCAACGAGCAGCGGCGGCAACAGCGGCAGCAGCAGCA
AAGGCCTGCTGGTACTGCTGGTTCGGGCTTCGGAGGGAGACCGAAAAACG
TGGTGCCACCACCTTCAATGGTGACGGGAGCGGCGATACCCGCAGACGAC
CCGGTGGTTGTTAAGAGCTTGACGTCACAGGTGGAATCGTCGTCTATTAC
AACCCGTAACGGGGCTATCCAGCGTGAGATGCAGGACGCCTACCGGAAGC
TCATCTGCGCCAACGTCGAGCGTAAGGTGGAATCGTCGTCTATTACAACC
CGTAACGGGGCTATCCAGCGTGAGATGCAGGACGCCTACCGGAAGCTCAT
CTGCGCCAACGTCGAGCGTAAGCTGACACTGCAAGATGTGGCTTCGTTCT
CGACCTTCCTGGTCGGGGTACGAGTGAGGCTACACGAGAAGGGCTCTAAC
CTCCGGAGGCGCCACAGCGTCCTGTCCTCCTTGCTAAAGCACGCACCTCG
CGCACGCGTGCAGCGCTGACACTGCAAGATGTGGCTTCGTTCTCGACCTT
CCTGGTCGGGGTACGAGTGAGGCTACACGAGAAGGGCTCTAACCTCCGGA
GGCGCCACAGCGTCCTGTCCTCCTTGCTAAAGCACGCACCTCGCGCACGC
GTGCAGCGAATCTACTCGGACCTCGCTGCTGTGGAGGAGCAGGAATCCGC
CCTTACCAAGGACGTCGACCTCTTTAACAAGCTGCAACAAGATTTGAAGG
AATCCCCGGCCTACAAAATCTACTCGGACCTCGCTGCTGTGGAGGAGCAG
GAATCCGCCCTTACCAAGGACGTCGACCTCTTTAACAAGCTGCAACAAGA
TTTGAAGGAATCCCCGGCCTACAAGGCGATGATGGAGTACGGCCAGTCGA
GCGGTATGGTAAACGTGGACGGGACGATGATGCCGGATCCCACCAAACAC
CCGGAGCTGGAAGCCATGGGCGATGATGGAGTACGGCCAGTCGAGCGGTA
TGGTAAACGTGGACGGGACGATGATGCCGGATCCCACCAAACACCCGGAG
CTGGAAGCCATGGCGTCCATGTCGGTGAAGGACATGCTGGCGGAGTTCAA
GATGGAGGACAAGCGTAACGAGGAGCAAGGCGGCGGTGGCCGCGGCGCTG
GCTCCGTCGGGGGTGGAAACGGGTTCAGCCCCGTCTTTTCGGCGTCAGCG
GGGACTGGGGGTCGGTTAAGGGGCGGGGCTGGCGCTGGGGGGGTGGGAAA
GGCGGGGGATGCGGCGGCCCCGCAAAAAAACAAGAAGGGGAAGAAGGGGA
AGAAAGATAGAAGACGGTAGGCGTCCATGTCGGTGAAGGACATGCTGGCG
GAGTTCAAGATGGAGGACAAGCGTAACGAGGAGCAAGGCGGCGGTGGCCG
CGGCGCTGGCTCCGTCGGGGGTGGAAACGGGTTCAGCCCCGTCTTTTCGG
CGTCAGCGGGGACTGGGGGTCGGTTAAGGGGCGGGGCTGGCGCTGGGGGG
GTGGGAAAGGCGGGGGATGCGGCGGCCCCGCAAAAAAACAAGAAGGGGAA
GAAGGGGAAGAAAGATAGAAGACGGTAG
back to top