mRNA_E-siliculosus-1a_F_contig1.19.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1.19.1
Unique NamemRNA_E-siliculosus-1a_F_contig1.19.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: D7G6X6_ECTSI (RL10P_insert domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X6_ECTSI)

HSP 1 Score: 441 bits (1133), Expect = 1.410e-152
Identity = 227/228 (99.56%), Postives = 228/228 (100.00%), Query Frame = 2
Query:  266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTNDAMVTE 949
            MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGT+DAMVTE
Sbjct:    1 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTDDAMVTE 228          
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: A0A835Z2W2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2W2_9STRA)

HSP 1 Score: 229 bits (585), Expect = 1.590e-69
Identity = 119/218 (54.59%), Postives = 156/218 (71.56%), Query Frame = 2
Query:  266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALA 919
            MP+S+RN+ VSLT T+KKGR LKQ ++ ++R  +D +  ++VF + N+RS+L+K+VRLDFR DSRFFMGKN +M  ALG S +DEY DNLRQVS+ ++GQ GLL T R  E V +YF  LAV + A  GF   ETI LP G    WPV MM+Q RKLG+ VEV++  L  RK  +MC  G+ ++PE AKLL L+D+KI+ F + L CRWSEG+FE  A
Sbjct:    1 MPKSKRNKTVSLTSTAKKGRTLKQAVIKDIRDHIDSHQRLFVFRYDNMRSRLMKDVRLDFRGDSRFFMGKNTIMQRALGTSVEDEYSDNLRQVSRHIRGQCGLLVTNRSQEAVLSYFADLAVPEFANAGFFAQETITLPVGPT-QWPVGMMDQLRKLGLQVEVQDSQLWLRKECDMCKKGQALTPEQAKLLTLHDRKISVFKIKLTCRWSEGDFEEYA 217          
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: A0A6V1SP53_HETAK (Ribosome assembly factor mrt4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SP53_HETAK)

HSP 1 Score: 200 bits (508), Expect = 2.090e-58
Identity = 109/213 (51.17%), Postives = 147/213 (69.01%), Query Frame = 2
Query:  266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGE 904
            MP+S+R++KVSLTKT  KGR+ KQ +V +VR+ +DE+ ++Y F F N+RS   KE R D+R DSRFF+GKNK+M +ALG++ +DEYQD LR +SK L G VGLL T RP +EV++YF   +  D A  G +  ET+ L  GSL ++P  MM + RKLG+ VEV + VL   +   +C AGEPI  E AKLL     K+ATF +SL+ RWSE +
Sbjct:    1 MPKSKRDKKVSLTKTDSKGRQQKQKMVQKVREAIDEFDALYTFRFDNMRSNNFKECRADWR-DSRFFLGKNKLMQIALGRTPEDEYQDGLRSISKELVGNVGLLMTSRPRDEVESYFSNFSKKDFAKAGAIAPETVTLERGSL-NFPAYMMSEIRKLGLTVEVRDAVLELMEDATICVAGEPIGVEAAKLLEHMQLKLATFQISLVSRWSEAD 211          
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: I2CRG5_NANGC (Ribosome assembly factor mrt4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRG5_NANGC)

HSP 1 Score: 200 bits (508), Expect = 4.420e-58
Identity = 113/227 (49.78%), Postives = 153/227 (67.40%), Query Frame = 2
Query:  242 TLHTAAAAMPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGS--LGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEAL 916
            T  + + +MPRS+R+QKVSLTKT+ KG+E K G +++VR+ +D + S+YVFSF ++RS   K+VR+D+R DSRFFMGKNKVM  ALG   +DE++DNLR +SKRL GQVGLL T R  EEV TYF+   V D A PG + D  + L      L  +P SM + FRKLG+ +E + G LV  +A  +C  G+ I+PE AKL+   D  +  F + L+C W +GEFE L
Sbjct:   14 TEPSLSTSMPRSRRDQKVSLTKTTSKGKEQKAGTIAKVREALDSFTSLYVFSFQHMRSSKFKDVRIDWR-DSRFFMGKNKVMQKALGLLPEDEFRDNLRFLSKRLSGQVGLLATNRSREEVLTYFENFKVQDFAKPGVIADADVTLEPSKDPLHFFPTSMFQLFRKLGLNLETKNGKLVLLEAFPVCRKGKAITPEQAKLMTHLDLPLVDFRIRLVCCWRDGEFEEL 239          
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: A0A3M6VK82_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VK82_9STRA)

HSP 1 Score: 199 bits (507), Expect = 5.160e-58
Identity = 107/227 (47.14%), Postives = 153/227 (67.40%), Query Frame = 2
Query:  266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTNDAMVT 946
            MP+S+R +   LT+ +KKGRELK+ +V  +R  VD Y S Y FS+ N+R+   K VR+DF+ DSRFF+GKNKVM LALG+S+++EY +NL ++SK + G  GLLFT +P EEV  YF  L+V+DH   GFV  ET+ +P G L  +  SMME  R LG+ V+++ G +V  +   +C  G+ ++PE AKLL  +D K+A F + +L  WS+ ++E LA  T DA+ T
Sbjct:    1 MPKSKRQRTKPLTQANKKGRELKKNVVDSIRNAVDTYESAYAFSYQNMRTNHFKNVRMDFK-DSRFFLGKNKVMKLALGRSKEEEYAENLYRLSKDVSGNTGLLFTNKPHEEVMDYFVKLSVSDHPRSGFVATETVTIPEGPLPQFIGSMMESLRGLGLPVDLKNGAIVLSRNYTICKPGQTLTPEQAKLLVHFDHKMAEFKLVMLSVWSKDKYERLA--TEDAVTT 224          
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: H3GA64_PHYRM (Ribosome assembly factor mrt4 n=24 Tax=Phytophthora TaxID=4783 RepID=H3GA64_PHYRM)

HSP 1 Score: 198 bits (503), Expect = 2.030e-57
Identity = 103/218 (47.25%), Postives = 150/218 (68.81%), Query Frame = 2
Query:  266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALA 919
            MP+S+R +   LT+ +KKG ELKQ +V  +R  VD Y S YVFSF N+R+   K+VR+DF+ DSRFF+GKNKVM LALG+S+++EY +NL ++SK + G  GLLFT +P EEV  YF  L+V+DH   GFV  ET+ +P G L  +  SM+E  R LG+ V+++ GV+V  +   +C  G+ ++PE AKLL  +D K+A F + +L  WS+ +++ +A
Sbjct:    1 MPKSKRQRTKPLTQANKKGNELKQNVVEAIRNAVDTYASAYVFSFQNMRTNHFKDVRMDFK-DSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGSTGLLFTNKPHEEVVAYFAKLSVSDHPRSGFVATETVTIPEGPLPQFIGSMLESLRGLGLPVDLKNGVIVLSRNYTICKPGQTLTPEQAKLLVHFDHKMAEFKLVMLSLWSKDKYQRIA 217          
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: A0A485KK68_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK68_9STRA)

HSP 1 Score: 197 bits (501), Expect = 4.990e-57
Identity = 106/219 (48.40%), Postives = 152/219 (69.41%), Query Frame = 2
Query:  266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWS-EGEFEALA 919
            MP+S+R +   LT+T  KG +LK+G+V  +R  +DEY +VYVFSF N+R+   K VR DF  DSRFF+GKNKVM +ALG++ ++EY +N+ +++  + G VGLL T +P EEV+ YFK LAV D A  GFV  ET+ +P G L  +  SM+E  R+LG+ V+++ G +V      +C AG+ ++PE AKLL  +DKK+ATF + LL RWS +G++E LA
Sbjct:    1 MPKSKRVRTKPLTQTKSKGADLKKGVVETIRNAIDEYQTVYVFSFENMRTNHFKVVRADF-SDSRFFLGKNKVMKVALGRTPEEEYAENIFKLATDISGSVGLLMTNKPNEEVQQYFKDLAVEDFAKSGFVATETVTIPAGPLPQFIGSMVESLRQLGLPVDLKRGAIVLINDHTICKAGQTLTPEQAKLLVHFDKKMATFNVQLLSRWSTDGKYERLA 218          
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: A0A8K1CRH8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRH8_PYTOL)

HSP 1 Score: 196 bits (499), Expect = 7.490e-57
Identity = 107/225 (47.56%), Postives = 150/225 (66.67%), Query Frame = 2
Query:  266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTNDAM 940
            MPRS+R +   LTK+ KKG ELKQ +V  +R+ VD Y S Y FSF N+R+   KEVRLDFR DSRFF+GKNKVM LALG+++++EY D+L +++  + G VGL FT R  +EV  YF  L+  D A  GFV  E + +P G L  +  S +E  R LG+ V++++GV+V R+   +C  G+ ++PE A+LL  +D+K+ATF ++ L  WS+G FE LAE     M
Sbjct:    1 MPRSRRQRVKPLTKSEKKGSELKQRVVDSIREAVDTYESAYAFSFQNMRTNHFKEVRLDFR-DSRFFLGKNKVMKLALGRTKEEEYADDLFKLAADVNGSVGLFFTNRDRQEVIDYFNKLSFTDFARSGFVATEAVSVPEGPLPQFIGSQLESLRTLGLPVDLKKGVVVLRQDYTICKEGQTLTPEQARLLQHFDRKMATFKLTPLSVWSKGSFERLAENPEAGM 224          
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: A0A3F2RLT2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLT2_9STRA)

HSP 1 Score: 195 bits (496), Expect = 2.510e-56
Identity = 106/227 (46.70%), Postives = 155/227 (68.28%), Query Frame = 2
Query:  266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTNDAMVT 946
            MP+S+R +  +LT+  KKG  LKQ +V  VR  VD Y S YVFSF N+R+   K+VR+DF+ DSRFF+GKNKVM LALG+S+++EY +NL ++SK + G  GLLFT +P EEV  YF  L+V+D+   GFV  ET+ +P G L  +  SM+E  R LG+ V++++GV+V  +   +C  G+ ++PE AKLL  +D+K+A F + +L  WS+ +++ LA  + DA  T
Sbjct:    1 MPKSKRQRTKALTQADKKGNALKQNVVDAVRNAVDTYTSAYVFSFQNMRTNHFKDVRMDFK-DSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGNTGLLFTNKPHEEVLDYFSKLSVSDYPRSGFVVTETVTVPEGPLPQFIGSMIESLRGLGLPVDLKKGVVVLSQNYTICKTGQAVTPEQAKLLVHFDRKMAEFKLVVLSVWSKDKYQRLA--SEDATTT 224          
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: K3WRY3_GLOUD (Ribosome assembly factor mrt4 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRY3_GLOUD)

HSP 1 Score: 194 bits (494), Expect = 4.140e-56
Identity = 103/225 (45.78%), Postives = 154/225 (68.44%), Query Frame = 2
Query:  266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTNDAM 940
            MP+S+R +  +LTK  KK  +LKQ +V  VR+ VD Y +++ FSFVN+R+   KEVR+DFR DSRFF+GKNKVM +ALG++E +EY DNL ++S+ L G VGLLFT +  +EV  YF  L+  D A  GFV  ET+ +P G L  +  SM+E  R LG+ V++++G +V  +   +C  G+ ++PE  KLL  +D+K+A F + +L  WS+GE++ LA+ + +A+
Sbjct:    1 MPKSKRQRTKALTKVDKKTSDLKQKVVESVREAVDSYATLFAFSFVNMRTNHFKEVRMDFR-DSRFFLGKNKVMKVALGRTEAEEYADNLSKISRDLNGNVGLLFTDKTEDEVTEYFNKLSEKDFARSGFVATETVQVPQGPLPQFIGSMVESLRTLGLPVDLKKGNVVLNQDYTICKEGQTLTPEQCKLLVHFDRKMAEFKLVMLSSWSKGEYKRLADASVNAI 224          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6X6_ECTSI1.410e-15299.56RL10P_insert domain-containing protein n=2 Tax=Ect... [more]
A0A835Z2W2_9STRA1.590e-6954.59Ribosome assembly factor mrt4 n=1 Tax=Tribonema mi... [more]
A0A6V1SP53_HETAK2.090e-5851.17Ribosome assembly factor mrt4 n=1 Tax=Heterosigma ... [more]
I2CRG5_NANGC4.420e-5849.78Ribosome assembly factor mrt4 (Fragment) n=1 Tax=N... [more]
A0A3M6VK82_9STRA5.160e-5847.14Ribosome assembly factor mrt4 n=1 Tax=Peronospora ... [more]
H3GA64_PHYRM2.030e-5747.25Ribosome assembly factor mrt4 n=24 Tax=Phytophthor... [more]
A0A485KK68_9STRA4.990e-5748.40Ribosome assembly factor mrt4 n=1 Tax=Aphanomyces ... [more]
A0A8K1CRH8_PYTOL7.490e-5747.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RLT2_9STRA2.510e-5646.70Ribosome assembly factor mrt4 n=1 Tax=Phytophthora... [more]
K3WRY3_GLOUD4.140e-5645.78Ribosome assembly factor mrt4 n=1 Tax=Globisporang... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1contigE-siliculosus-1a_F_contig1:145106..147767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size687
Model size1334
Exons3
Ec32 orthologEc-01_011870.1
Ec32 ortholog descriptionRibosomal protein L10/acidic P0
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsCOG0244@1,KOG0816@2759
EggNOG free text desc.ribosomal large subunit assembly
GOsGO:0000027,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
KEGG koko:K14815
Preferred nameMRTO4
Seed eggNOG ortholog2880.D7G6X6
Seed ortholog evalue6e-123
Seed ortholog score446.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1.19.1prot_E-siliculosus-1a_F_contig1.19.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1 145371..147385 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927499.5030262-UTR-E-siliculosus-1a_F_contig1:145105..1453701622927499.5030262-UTR-E-siliculosus-1a_F_contig1:145105..145370Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1 145106..145370 +
1696318552.435758-UTR-E-siliculosus-1a_F_contig1:145105..1453701696318552.435758-UTR-E-siliculosus-1a_F_contig1:145105..145370Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1 145106..145370 +
1622927499.5741982-UTR-E-siliculosus-1a_F_contig1:147385..1477671622927499.5741982-UTR-E-siliculosus-1a_F_contig1:147385..147767Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1 147386..147767 +
1696318552.4972568-UTR-E-siliculosus-1a_F_contig1:147385..1477671696318552.4972568-UTR-E-siliculosus-1a_F_contig1:147385..147767Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1 147386..147767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927499.526127-CDS-E-siliculosus-1a_F_contig1:145370..1456701622927499.526127-CDS-E-siliculosus-1a_F_contig1:145370..145670Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 145371..145670 +
1696318552.4637194-CDS-E-siliculosus-1a_F_contig1:145370..1456701696318552.4637194-CDS-E-siliculosus-1a_F_contig1:145370..145670Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 145371..145670 +
1622927499.5457168-CDS-E-siliculosus-1a_F_contig1:145951..1462241622927499.5457168-CDS-E-siliculosus-1a_F_contig1:145951..146224Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 145952..146224 +
1696318552.4772294-CDS-E-siliculosus-1a_F_contig1:145951..1462241696318552.4772294-CDS-E-siliculosus-1a_F_contig1:145951..146224Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 145952..146224 +
1622927499.55842-CDS-E-siliculosus-1a_F_contig1:147271..1473851622927499.55842-CDS-E-siliculosus-1a_F_contig1:147271..147385Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 147272..147385 +
1696318552.485818-CDS-E-siliculosus-1a_F_contig1:147271..1473851696318552.485818-CDS-E-siliculosus-1a_F_contig1:147271..147385Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 147272..147385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1.19.1

>prot_E-siliculosus-1a_F_contig1.19.1 ID=prot_E-siliculosus-1a_F_contig1.19.1|Name=mRNA_E-siliculosus-1a_F_contig1.19.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=229bp
MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRS
KLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQ
VGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSM
MEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAT
FTMSLLCRWSEGEFEALAEGTNDAMVTE*
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mRNA from alignment at E-siliculosus-1a_F_contig1:145106..147767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1.19.1 ID=mRNA_E-siliculosus-1a_F_contig1.19.1|Name=mRNA_E-siliculosus-1a_F_contig1.19.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2662bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:145106..147767+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCACAGGCCAGACACGACAGCAACAGACACCGTCACCTTCTCTCAAGCA CCAGCAACCGCCTGCCCACGTTGGACCGTATCTGCTTCTCGCTACGCACG TACTGCAACCGAGCGTCGTGCGAGGTTCGTGGCCAAGGACGCGTGGAGTG GCAAAGCTGGAGCTGTCAGCGAGCAAGCCCACGCTGCGGTAAACGGAGAT CTTACATCATCGAGTTGGGTGGAGGTTAGGAGAGCGGATACACCCTCCAC ACAGCAGCAGCAGCTATGCCGCGATCACAGCGAAACCAGAAGGTTTCCCT GACGAAAACTTCCAAGAAGGGCCGGGAGCTGAAGCAGGGTATCGTTAGCG AGGTGCGGAAATGCGTCGACGAGTACCCCAGCGTTTATGTGTTCTCGTTC GTGAACCTGAGGAGCAAGCTCTTGAAGGAGGTCCGGCTGGACTTCAGGGA GGACAGCCGCTTCTTCATGGGCAAGAACAAGGTCATGATACTCGCGCTGG GGAAGTCGGAGCAGGACGAGTACCAGGACAACTTGAGACAAGTCAGCAAG CGGTTGAAAGGACAGGTGAGCTGAGAGACGGTGCTGTACGGACGCGTGTC GGCTTGTTGTAGAGCACGTGCCTGTTTCGCTTCATGCTCCCACAACAGCG GTTGCGTCTTCGAGTGTCCACTTCTCTTGCAATGTAACCACCTGCCTTTA GTTTTTCGTGCCGGTGACTTCGTGTGGCTTGGTGAAACACAGCAGTAGTA AATCCCCAAGAGCAAACAAGATGCCACCCTACGCACACACGCTCAAATCT CAACCTTTAACTCTCCGCCGTTCTGTTTGCCACATCATGCGCGCAGGTGG GGCTGCTCTTCACAAGAAGGCCAGCGGAGGAGGTCAAGACCTACTTCAAA GCCCTCGCGGTCGCCGACCACGCGCCGCCCGGGTTCGTTCACGACGAGAC CATCCCGCTGCCTACGGGATCGCTAGGAGATTGGCCTGTGTCTATGATGG AGCAGTTTCGAAAGCTCGGGGTGGTGGTGGAGGTGGAGGAGGGGGTGCTG GTGAACCGCAAGGCGATAAACATGTGCACCGCGGGAGAGCCCATATCGCC CGAGGGGGCCAAGCTCTTGGTGAGTACAGCAGCAGTTGTGAGATCCTTAC ACTGCTGTTGGGTAGCAAACGGTAGACCCGTCGTTATTCCTGCAGTAGCC TTCGCAGGGTTTTTGTATTCAGGAAACATGTTGGGATAAAGCTTACAAAA TGTTGGAAGTTGGGTTAGGGCTAGGGTTCGGGAATACGGTCTGCGTACCC CCTCTCTGTTATTTTTCCTTATTATACTGAATTTCCCTCGAAGGCGGTCC TATTCCTGCGGCTTGTTTTTCACACGAACCCCGCGGGTTGGCCGTAGAAG ATTTTGGATCTGAAACCGTCAGCAGTGCACTTTTCGTCTTGGTGTTTCCA GCTGGCAACTTCCATGGAATATCAACCCGCGGAAAACGCCTGCCCTCCCT GTAGTGTAAGCGTCTGGTTATTGGTATATTGTCCCCCGACTCCCTTGCAC GACTGCTGTGGGTAAGCTGTATGGTTTGCCTCTCCCCTGCTATCCGTCAG GTCGATTGAAGTAATCGTGGTGTAGAGTGTAGACTAGCCTTCTTGAGCAT GCACCACAACAGCAGTCCCTCCGTTGCAGACAAAGGATGCCACGACGAAG TCTCACACAGCAAAAGAGTGGCAAATGTGACTTAAATTCGGTGGTACACG GGCTAATGGCTTTAGGGCTAGCGGACAGCCCGTAAGTTGTGCTAATATCA GGTCTTTGATATCACGACTGACTCCCCTGGAACGATGGCTTTCATGTATT TGTAATTGTGTTGTTGAGGGTTGTCCCATCGAGGCGGGATGTGGAGGTGG AGGTAAGGTTGTGCGATCGCCGCTGTCGCGGGCATGACAGCAACCAACCT GCCTTTGCAGTCAAGAGCAGCATATGCCCTCGAAATGTAACAAACCCCGA TAACTGGAAGGGAGCGGGGAGTCTCGAGGAGGCGTGAAGATGCATGTGAC ACCTCCTCAACAAACGCCGCATATAACAAACGCCGTTCGTCTGTATGTAC ATCGGTCTGAGCTTGTGTCACAATGTCGTCCAATCCCGTGTAAACGTTAC GTGTCGTGCTTGGCAGGCCTTGTACGACAAGAAGATCGCCACGTTTACGA TGTCGCTCTTGTGCCGGTGGAGCGAGGGGGAGTTTGAGGCGTTGGCGGAG GGAACGAACGACGCTATGGTCACCGAGTAGTTTCGAACAATCGTAGCCAA AGCACGGAGCTGTCTCTCCCCCTAAACATGACGACATGTGCCTTGTGTTT GGCTCTGAACGTTTGTTGTGTATTTCGTTCTGTGTTGAGGATTTTGTTTT TCCTCCGTGGGAGAGGTTGTGGCATGCACAAGGTGTAGGCGGTTGTTGTG GAGGACTGGCTTTAGTTCCACAACCGCAAAGATGTTCAACAAGGATGATA GTGTTGTGTTTTAGTTTTGTTCAAATGTATGACCTGCCCTTGGTGTACGC GAGATGTACTGTAGTGACAAGAGTGCGATCAGATGCACCGTAAAAGCGAA CGCATAACTTGAGGGGTGTACAGCAGTATCGTGTACACCTCTTTGACTGT TTTTTTGGCGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1:145106..147767+

>mRNA_E-siliculosus-1a_F_contig1.19.1 ID=mRNA_E-siliculosus-1a_F_contig1.19.1|Name=mRNA_E-siliculosus-1a_F_contig1.19.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1374bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:145106..147767+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGCGATCACAGCGAAACCAGAAGGTTTCCCTGACGAAAACTTCCAA
GAAGGGCCGGGAGCTGAAGCAGGGTATCGTTAGCGAGGTGCGGAAATGCG
TCGACGAGTACCCCAGCGTTTATGTGTTCTCGTTCGTGAACCTGAGGAGC
AAGCTCTTGAAGGAGGTCCGGCTGGACTTCAGGGAGGACAGCCGCTTCTT
CATGGGCAAGAACAAGGTCATGATACTCGCGCTGGGGAAGTCGGAGCAGG
ACGAGTACCAGGACAACTTGAGACAAGTCAGCAAGCGGTTGAAAGGACAG
ATGCCGCGATCACAGCGAAACCAGAAGGTTTCCCTGACGAAAACTTCCAA
GAAGGGCCGGGAGCTGAAGCAGGGTATCGTTAGCGAGGTGCGGAAATGCG
TCGACGAGTACCCCAGCGTTTATGTGTTCTCGTTCGTGAACCTGAGGAGC
AAGCTCTTGAAGGAGGTCCGGCTGGACTTCAGGGAGGACAGCCGCTTCTT
CATGGGCAAGAACAAGGTCATGATACTCGCGCTGGGGAAGTCGGAGCAGG
ACGAGTACCAGGACAACTTGAGACAAGTCAGCAAGCGGTTGAAAGGACAG
GTGGGGCTGCTCTTCACAAGAAGGCCAGCGGAGGAGGTCAAGACCTACTT
CAAAGCCCTCGCGGTCGCCGACCACGCGCCGCCCGGGTTCGTTCACGACG
AGACCATCCCGCTGCCTACGGGATCGCTAGGAGATTGGCCTGTGTCTATG
ATGGAGCAGTTTCGAAAGCTCGGGGTGGTGGTGGAGGTGGAGGAGGGGGT
GCTGGTGAACCGCAAGGCGATAAACATGTGCACCGCGGGAGAGCCCATAT
CGCCCGAGGGGGCCAAGCTCTTGGTGGGGCTGCTCTTCACAAGAAGGCCA
GCGGAGGAGGTCAAGACCTACTTCAAAGCCCTCGCGGTCGCCGACCACGC
GCCGCCCGGGTTCGTTCACGACGAGACCATCCCGCTGCCTACGGGATCGC
TAGGAGATTGGCCTGTGTCTATGATGGAGCAGTTTCGAAAGCTCGGGGTG
GTGGTGGAGGTGGAGGAGGGGGTGCTGGTGAACCGCAAGGCGATAAACAT
GTGCACCGCGGGAGAGCCCATATCGCCCGAGGGGGCCAAGCTCTTGGCCT
TGTACGACAAGAAGATCGCCACGTTTACGATGTCGCTCTTGTGCCGGTGG
AGCGAGGGGGAGTTTGAGGCGTTGGCGGAGGGAACGAACGACGCTATGGT
CACCGAGTAGGCCTTGTACGACAAGAAGATCGCCACGTTTACGATGTCGC
TCTTGTGCCGGTGGAGCGAGGGGGAGTTTGAGGCGTTGGCGGAGGGAACG
AACGACGCTATGGTCACCGAGTAG
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