mRNA_E-siliculosus-1a_F_contig1284.1735.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI) HSP 1 Score: 554 bits (1427), Expect = 4.710e-195 Identity = 272/278 (97.84%), Postives = 273/278 (98.20%), Query Frame = 3
Query: 444 GQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDGMANPTPAPTEPLADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCSEDWDQCGGTTEVGYWEXXXXXXXXXXXXXXXXXXXXXLPDDYVPDEE 1277
GQVLEIKLGMTAYHWGHVEFFICNADEMEDPDG+AN ECFN YPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQL EGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEE WACADFAITPDGMANPTPAPTEPLADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCSEDWDQCGGTTEVGYWEXXXXXXXXXXXXXXXXXXXXXLPDD VPDEE
Sbjct: 110 GQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEEFWACADFAITPDGMANPTPAPTEPLADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCSEDWDQCGGTTEVGYWEXXXXXXXXXXXXXXXXXXXXXLPDDNVPDEE 387
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D7FZR0_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR0_ECTSI) HSP 1 Score: 270 bits (690), Expect = 6.340e-83 Identity = 136/265 (51.32%), Postives = 164/265 (61.89%), Query Frame = 3
Query: 444 GQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCR--EGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDGMA-NPTPA-----PTEPLADCLDPVGPYDQCGGED-------YEGSDCCREGYECTEMASCYSQCRPI-----------PGGCSEDWDQCGG 1160
GQVLE + M A+HWGH+EFFICNAD DPDG+ ECFN+YPLTRAEGDD+NSPIDPN+PGRYY DP CR GE DQTKP A G + Y L + + C CILQM Y+TGN+C H+GYEEF P SWPSACAP K DW++ R CG+ G YPEE WAC+DF+IT D +PTP+ P +C + G QCGG + G CC G C+ +S+CRP P C+E+W QCGG
Sbjct: 137 GQVLEFVIVMNAHHWGHLEFFICNADN--DPDGIPTQECFNEYPLTRAEGDDDNSPIDPNFPGRYYCDPTCRGQTGEVDQTKPLHAISGENMKMRYVLPD-IECSHCILQMVYHTGNTCHHIGYEEFNPPSWPSACAPNKEDWVDTTREACGQGGYYPEEFWACSDFSITRDATPPSPTPSVETIPPVNEPTECAEEWG---QCGGAGGGAVDGVWTGPTCCVSGTTCSYKDEWWSECRPTGDSSSDDTPEEPTECAEEWGQCGG 395
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI) HSP 1 Score: 266 bits (680), Expect = 8.070e-82 Identity = 134/288 (46.53%), Postives = 161/288 (55.90%), Query Frame = 3
Query: 444 GQVLEIKLGMTAYHWGHVEFFICNADEMED-PDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWI-ELDRYLCGENGSYPEECWACADFAITPDG----------------------------------------------------MANPTPAPTEPLADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCSEDW 1145
G +LE+K+ + YHWGHVE F+C+AD++ D PD V CFN+YPL RAE D+ NSPIDP GR+ +DP CR ETDQ GA G V A +QL +G+TC+RC++QM YYTGNSCKH GY EF P SWPS+CAP K DWI E+ CG+ +YPEE W CAD +IT DG P T+P DC DPV + QCGG Y+GS CC GYEC EMA CYS+CRP GCSE W
Sbjct: 82 GGILEVKIVVATYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEIVGQHCGDGDAYPEEFWNCADVSITSDGGPXXXXXXXXETPKETKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVSTDP--DCEDPVDAFAQCGGAGYDGSTCCTAGYECEEMADCYSECRPRGDGCSESW 367
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI) HSP 1 Score: 261 bits (668), Expect = 5.500e-79 Identity = 124/221 (56.11%), Postives = 150/221 (67.87%), Query Frame = 3
Query: 444 GQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDGMANPTPAPTEPLADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYS 1106
GQVLE+ + M AYHWGH EFF+CN D+M+DPDGV ECFN +PLTRA+ D + SPIDPNYPGRYYVDP+CRE ET+Q+ + +GY I Y L + + C+ CILQM YYTGN+CKH+GYEEF P SWPS+CAP K DWIELDRY+CG G YPEE WAC+DF++T DG TPA P+ D +D D G G E E CY+
Sbjct: 139 GQVLEMDIVMNAYHWGHCEFFVCNTDDMDDPDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQSS--NSIEGYNIKMRYVLPD-IECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWIELDRYVCGTRGQYPEEFWACSDFSMTSDGS---TPADA-PMPDPVDEEDDEDSTDG-----------GMEMYEYVGCYT 341
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE) HSP 1 Score: 259 bits (662), Expect = 1.030e-77 Identity = 133/281 (47.33%), Postives = 158/281 (56.23%), Query Frame = 3
Query: 489 GHVEFFICNADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPD----GMANPTPAPTE-----------------------------------------------PLA-DCLDPVGPYDQCGGED-YEGSDCCREGYECTEMASCYSQCRPIP----GGCSEDWDQCGG 1160
GH+EFFICNA++M DPDGV CFN +PL RA+ D + SPIDP++ GRYY+DP CR GETDQ GA G V A Y+L GLTC RCILQM YYTGN+CKH GY+EF+P S P CAP K DW++ +CGE+G YPEE W CAD IT D G A TP+PT+ P A C DP Y+QCGG+D Y+G CC E EC E+A CYS+CRP CS +W QCGG
Sbjct: 214 GHLEFFICNAEDMSDPDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGNACKHPGYDEFDPVSVPDGCAPTKEDWVQTQLGMCGEDGRYPEEFWNCADIEITSDEDGGGPAPTTPSPTDEEELSPTPEPSVPTVELPRTPXXXXXXXXXXXSGMESTPVPSVAPASPTATSCDDPAEVYEQCGGDDSYDGRTCCVENSECVELADCYSECRPAETTPEDNCSGEWGQCGG 494
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI) HSP 1 Score: 250 bits (639), Expect = 1.850e-74 Identity = 136/348 (39.08%), Postives = 165/348 (47.41%), Query Frame = 3
Query: 444 GQVLEIKLGMTAYHWGHVEFFICNADEMED-PDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDG----------------------MANPTPAPT-------------------EPLA------------------------------------------------------------------------DCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCSEDW 1145
G +LE+K+ ++ YHWGHVE F+C+AD++ D PD V CFN+YPL RAE D+ N PIDP GR+ +DP CR ETDQ GA G V A +QL +G+TC+RC++QM YYTGNSCKH GY EF P SWPS+CAP K DWI CG+ +YPEE W CAD +IT DG P+PAPT EP+ DC DPVG + QCGG Y+GS CCR GYEC +MA CYS+CRP CSE W
Sbjct: 131 GGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEAVGQCGDGDAYPEEFWNCADVSITSDGGPXXXXXXXPETPQKPEAPVDEATEPSPAPTAVVEEYXXXXXXXXXXXHEEPMTPSPTTAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVSTDPDCEDPVGAFAQCGGAGYDGSTCCRAGYECEKMADCYSECRPRGDRCSEGW 478
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI) HSP 1 Score: 248 bits (634), Expect = 2.120e-73 Identity = 139/366 (37.98%), Postives = 163/366 (44.54%), Query Frame = 3
Query: 444 GQVLEIKLGMTAYHWGHVEFFICN-ADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDG--------------------------------------------------------------------------------------------------------------------MANPTPAPTEPL---------------ADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCSEDW 1145
G VLE+K+ ++ YHWGHVE F+C+ AD E D + CFN YPL RA D+ N PIDP Y GR+ +DP CR ETDQ EGA G V A YQL EG+ CDRC++QM YYTGNSCKH GY EF P SWPS+CAP K DWI CG+ +YPEE W CAD +IT DG A P +PTEP+ +DC DPVG ++QCGGE Y+GS CCR GYEC EMA CYS+CRP CSE W
Sbjct: 138 GGVLEVKILVSTYHWGHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDGGPGTAPXXXXXXXXXXXXXXXEEEGTEAPMXXXXXXXXXXXXXXXXEFDDESTPXXXXXXXXXXXXXXXXXXXXXXEPTTPAPVEGDXXXXXXXXXXSMDGEDYXXXXXXXTAELEPATPMDSPTEPIVATFAPSVPPPISDHSDCEDPVGAFNQCGGEGYDGSTCCRAGYECEEMAECYSECRPKDDRCSEGW 503
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: A0A6H5JFL8_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL8_9PHAE) HSP 1 Score: 246 bits (627), Expect = 2.450e-72 Identity = 111/186 (59.68%), Postives = 133/186 (71.51%), Query Frame = 3
Query: 435 LPRGQVLEIKLGMTAYHWGHVEFFICN-ADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDGMANPTPAPTEP 989
L G VL+IK+ + Y GH+EFFICN AD P N ECFN PLTRAEGDD NSPIDP YPGRYYV+P C E + P+GAQDGYVI+ YQL EGLTCD C+LQM +YTGN+CKHVGY++FEP SWPS CAP K +WI D ++CG G+YPEE W+C+D +IT DG + +P EP
Sbjct: 140 LKEGGVLDIKVVVAEYLGGHLEFFICNSADLRYGPTSKPNQECFNMNPLTRAEGDDVNSPIDPAYPGRYYVNPPCHATEHPEALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDGPTEKSSSPVEP 325
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI) HSP 1 Score: 255 bits (651), Expect = 1.400e-71 Identity = 116/186 (62.37%), Postives = 138/186 (74.19%), Query Frame = 3
Query: 444 GQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDGMANP-TP--APTEPL 992
G+VLE+ + M AYHWGH EFF+CNADEM+DPDGV ECFN+YPLTRA D + SPIDPNYPGRYYVDP+CR GET+Q PEGA GY I Y L + + CDRC+LQM H+GY+EF+P SWPS CAP K DWIEL+RY+CGE G+YPEE WAC+D ++T DG A P TP PT P+
Sbjct: 143 GEVLEMDIIMNAYHWGHCEFFLCNADEMDDPDGVPTQECFNRYPLTRAADDGDASPIDPNYPGRYYVDPECRAGETEQGSPEGAPKGYNIKMRYVLPD-IECDRCVLQM---------HIGYDEFDPPSWPSTCAPNKSDWIELNRYICGEEGAYPEEFWACSDISLTSDGSAPPPTPYTTPTTPV 318
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D7FZQ9_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ9_ECTSI) HSP 1 Score: 241 bits (615), Expect = 2.260e-71 Identity = 122/240 (50.83%), Postives = 147/240 (61.25%), Query Frame = 3
Query: 444 GQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCR--EGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDGMANPT------PAPTEPLADCLDPVGPYDQCGGED-------YEGSDCCREGYECTEMASCYSQCRP 1118
GQ LE + M AYHWGH+EFFICNAD DP+G+ ECFN+YPLTRAEGDD NSPIDP++PGRYY DP CR EGE DQTKP A G + Y L + + C CILQM Y+TGN+C H+GY++F+P SWP CA K W+ CG+ G YPEE WAC+DF+IT DG + T PA TEP C + + QCGG + G CC G C +S CRP
Sbjct: 138 GQDLEFNVVMNAYHWGHLEFFICNADN--DPNGIPTQECFNEYPLTRAEGDDYNSPIDPDFPGRYYCDPTCRGEEGEVDQTKPVHAISGENMKMRYVLPD-IECSHCILQMVYHTGNTCYHIGYDDFDPPSWPGDCATTKEQWVNTTVEACGQEGYYPEEFWACSDFSITSDGPPSSTXXXXXXPAVTEPTG-CAEE---WQQCGGAGGDAVGGVWTGPTCCVPGTTCYYKDVYWSDCRP 370 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1284.1735.1 >prot_E-siliculosus-1a_F_contig1284.1735.1 ID=prot_E-siliculosus-1a_F_contig1284.1735.1|Name=mRNA_E-siliculosus-1a_F_contig1284.1735.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=171bp MNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEEback to top mRNA from alignment at E-siliculosus-1a_F_contig1284:2023..6831- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1284.1735.1 ID=mRNA_E-siliculosus-1a_F_contig1284.1735.1|Name=mRNA_E-siliculosus-1a_F_contig1284.1735.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4809bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1284:2023..6831- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1284:2023..6831- >mRNA_E-siliculosus-1a_F_contig1284.1735.1 ID=mRNA_E-siliculosus-1a_F_contig1284.1735.1|Name=mRNA_E-siliculosus-1a_F_contig1284.1735.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1026bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1284:2023..6831- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |