mRNA_E-siliculosus-1a_F_contig12773.1696.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: D7G5F7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F7_ECTSI) HSP 1 Score: 127 bits (318), Expect = 4.100e-34 Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 1
Query: 1 CSGMDASYTHFGTQYGEECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEIVSDTTPATDDPTPAP 216
CSGMDASYTHFGTQYG ECWCTGSLG+TETSTACTMDCAGNTAETCGGFDALTLYEIVS+ P TPAP
Sbjct: 160 CSGMDASYTHFGTQYGNECWCTGSLGSTETSTACTMDCAGNTAETCGGFDALTLYEIVSEAPP-----TPAP 226
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: D7FL81_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL81_ECTSI) HSP 1 Score: 118 bits (295), Expect = 1.290e-31 Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 1
Query: 1 CSGMDASYTHFGTQYGEECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEIVSDTTPATDDPTPAP 216
CS D S THFGTQYGEECWCTGSLGTTETS+ACTMDCAGN+AETCGGFDAL++YEIV+DT + PTPAP
Sbjct: 86 CSAQDDSNTHFGTQYGEECWCTGSLGTTETSSACTMDCAGNSAETCGGFDALSMYEIVADT---SSPPTPAP 154
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: A0A6H5K566_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K566_9PHAE) HSP 1 Score: 117 bits (294), Expect = 5.370e-29 Identity = 57/73 (78.08%), Postives = 61/73 (83.56%), Query Frame = 1
Query: 1 CSGMDASYTHFGTQYGEECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEIVSDTTPATDDPTPAPV 219
CS MD+SYTHFGTQYGEECWCTGSLGTTETSTACT CAGN ETCGGFDALTLYEI+S+ P TPAP+
Sbjct: 385 CSEMDSSYTHFGTQYGEECWCTGSLGTTETSTACTYPCAGNAGETCGGFDALTLYEIISEAPP-----TPAPL 452
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: A0A6H5K6V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6V8_9PHAE) HSP 1 Score: 101 bits (251), Expect = 2.040e-23 Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 1
Query: 1 CSGMDASYTHFGTQYGEECWCTGSLGTTETSTACTMDCAGNTAETCGGFDAL 156
CS MD+SYTHFGTQYGEECWCTGSLGTTETSTACT CAGN ETCGGFDAL
Sbjct: 385 CSEMDSSYTHFGTQYGEECWCTGSLGTTETSTACTYPCAGNAGETCGGFDAL 436
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: A0A6H5KH26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH26_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 4.160e-21 Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 1
Query: 52 ECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEIVSDTTPATDDPTPAPV 219
+CWCT SLGTTETSTACT CAGN ETCGGFDAL+LY+IVS TTP TDDPTPAP+
Sbjct: 5 QCWCTASLGTTETSTACTYPCAGNPGETCGGFDALSLYKIVSVTTPPTDDPTPAPL 60
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: A0A6H5K384_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K384_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 2.310e-17 Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 1
Query: 52 ECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEIVSDTTPATDDPTPAPV 219
+CWCTGSLGTTETSTACT CAGN ETCGGFDALTLYEI+S+ P TPAP+
Sbjct: 387 QCWCTGSLGTTETSTACTYPCAGNAGETCGGFDALTLYEIISEAPP-----TPAPL 437
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: A0A6H5KQ76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ76_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 7.300e-13 Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 1 CSGMDASYTHFGTQYGEECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEI 171
C + + THFGTQYG EC+CT LG + ST CT DC GN ETCGGFD +T Y I
Sbjct: 340 CRELHPTSTHFGTQYGNECFCTDVLGESAVSTDCTYDCIGNPDETCGGFDRITAYRI 396
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: A0A6H5K223_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K223_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 1.900e-12 Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 1
Query: 1 CSGMDASYTHFGTQYGEECWCTGS-LGTTETSTACTMDCAGNTAETCGGFDALTLYEIVSDTTPATDDPTPAPVDDVSGIQYVG 249
C+ A Y ++GTQYGEECWC S T ST C+ C+G+ ETCGGF+A+++Y SD + PTP V + + Y+G
Sbjct: 4 CADFCAEYAYYGTQYGEECWCGNSGYDTLGESTDCSFGCSGDAGETCGGFNAMSVYSTGSD---PVETPTPVAVIEPTDPTYLG 84
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: A0A6H5JNN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN6_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 3.470e-12 Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 1
Query: 52 ECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEIVSDTTPATDDPTPAPV-----DDVSGI 237
EC+CTGSLG T++STA + CAGN+ E CG A+T+YEI S T TDDPTPAPV +DV GI
Sbjct: 509 ECFCTGSLGATQSSTAYSYACAGNSGELCGRLYAMTVYEIGSVATSPTDDPTPAPVPTLDPEDVRGI 575
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: D7FMV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV1_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 1.660e-11 Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 1
Query: 1 CSGMDASYTHFGTQYGEECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEI 171
C + + THFGTQYG EC+CT L + ST CT +C GN ETCGGFD +T Y I
Sbjct: 394 CRELHPTSTHFGTQYGNECFCTDVLRESAVSTGCTYECRGNPDETCGGFDMITAYRI 450 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig12773.1696.1 >prot_E-siliculosus-1a_F_contig12773.1696.1 ID=prot_E-siliculosus-1a_F_contig12773.1696.1|Name=mRNA_E-siliculosus-1a_F_contig12773.1696.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=80bp MDASYTHFGTQYGEECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTback to top mRNA from alignment at E-siliculosus-1a_F_contig12773:536..1128+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig12773.1696.1 ID=mRNA_E-siliculosus-1a_F_contig12773.1696.1|Name=mRNA_E-siliculosus-1a_F_contig12773.1696.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=593bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12773:536..1128+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12773:536..1128+ >mRNA_E-siliculosus-1a_F_contig12773.1696.1 ID=mRNA_E-siliculosus-1a_F_contig12773.1696.1|Name=mRNA_E-siliculosus-1a_F_contig12773.1696.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12773:536..1128+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |