mRNA_E-siliculosus-1a_F_contig12773.1696.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12773.1696.1
Unique NamemRNA_E-siliculosus-1a_F_contig12773.1696.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: D7G5F7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F7_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 4.100e-34
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 1
Query:    1 CSGMDASYTHFGTQYGEECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEIVSDTTPATDDPTPAP 216
            CSGMDASYTHFGTQYG ECWCTGSLG+TETSTACTMDCAGNTAETCGGFDALTLYEIVS+  P     TPAP
Sbjct:  160 CSGMDASYTHFGTQYGNECWCTGSLGSTETSTACTMDCAGNTAETCGGFDALTLYEIVSEAPP-----TPAP 226          
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: D7FL81_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL81_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.290e-31
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 CSGMDASYTHFGTQYGEECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEIVSDTTPATDDPTPAP 216
            CS  D S THFGTQYGEECWCTGSLGTTETS+ACTMDCAGN+AETCGGFDAL++YEIV+DT   +  PTPAP
Sbjct:   86 CSAQDDSNTHFGTQYGEECWCTGSLGTTETSSACTMDCAGNSAETCGGFDALSMYEIVADT---SSPPTPAP 154          
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: A0A6H5K566_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K566_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.370e-29
Identity = 57/73 (78.08%), Postives = 61/73 (83.56%), Query Frame = 1
Query:    1 CSGMDASYTHFGTQYGEECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEIVSDTTPATDDPTPAPV 219
            CS MD+SYTHFGTQYGEECWCTGSLGTTETSTACT  CAGN  ETCGGFDALTLYEI+S+  P     TPAP+
Sbjct:  385 CSEMDSSYTHFGTQYGEECWCTGSLGTTETSTACTYPCAGNAGETCGGFDALTLYEIISEAPP-----TPAPL 452          
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: A0A6H5K6V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6V8_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.040e-23
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 1
Query:    1 CSGMDASYTHFGTQYGEECWCTGSLGTTETSTACTMDCAGNTAETCGGFDAL 156
            CS MD+SYTHFGTQYGEECWCTGSLGTTETSTACT  CAGN  ETCGGFDAL
Sbjct:  385 CSEMDSSYTHFGTQYGEECWCTGSLGTTETSTACTYPCAGNAGETCGGFDAL 436          
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: A0A6H5KH26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH26_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.160e-21
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 1
Query:   52 ECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEIVSDTTPATDDPTPAPV 219
            +CWCT SLGTTETSTACT  CAGN  ETCGGFDAL+LY+IVS TTP TDDPTPAP+
Sbjct:    5 QCWCTASLGTTETSTACTYPCAGNPGETCGGFDALSLYKIVSVTTPPTDDPTPAPL 60          
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: A0A6H5K384_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K384_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.310e-17
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   52 ECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEIVSDTTPATDDPTPAPV 219
            +CWCTGSLGTTETSTACT  CAGN  ETCGGFDALTLYEI+S+  P     TPAP+
Sbjct:  387 QCWCTGSLGTTETSTACTYPCAGNAGETCGGFDALTLYEIISEAPP-----TPAPL 437          
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: A0A6H5KQ76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ76_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 7.300e-13
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 CSGMDASYTHFGTQYGEECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEI 171
            C  +  + THFGTQYG EC+CT  LG +  ST CT DC GN  ETCGGFD +T Y I
Sbjct:  340 CRELHPTSTHFGTQYGNECFCTDVLGESAVSTDCTYDCIGNPDETCGGFDRITAYRI 396          
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: A0A6H5K223_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K223_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.900e-12
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    1 CSGMDASYTHFGTQYGEECWCTGS-LGTTETSTACTMDCAGNTAETCGGFDALTLYEIVSDTTPATDDPTPAPVDDVSGIQYVG 249
            C+   A Y ++GTQYGEECWC  S   T   ST C+  C+G+  ETCGGF+A+++Y   SD     + PTP  V + +   Y+G
Sbjct:    4 CADFCAEYAYYGTQYGEECWCGNSGYDTLGESTDCSFGCSGDAGETCGGFNAMSVYSTGSD---PVETPTPVAVIEPTDPTYLG 84          
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: A0A6H5JNN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.470e-12
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   52 ECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEIVSDTTPATDDPTPAPV-----DDVSGI 237
            EC+CTGSLG T++STA +  CAGN+ E CG   A+T+YEI S  T  TDDPTPAPV     +DV GI
Sbjct:  509 ECFCTGSLGATQSSTAYSYACAGNSGELCGRLYAMTVYEIGSVATSPTDDPTPAPVPTLDPEDVRGI 575          
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Match: D7FMV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV1_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.660e-11
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 CSGMDASYTHFGTQYGEECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALTLYEI 171
            C  +  + THFGTQYG EC+CT  L  +  ST CT +C GN  ETCGGFD +T Y I
Sbjct:  394 CRELHPTSTHFGTQYGNECFCTDVLRESAVSTGCTYECRGNPDETCGGFDMITAYRI 450          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12773.1696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5F7_ECTSI4.100e-3486.11WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
D7FL81_ECTSI1.290e-3179.17WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K566_9PHAE5.370e-2978.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6V8_9PHAE2.040e-2388.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH26_9PHAE4.160e-2180.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K384_9PHAE2.310e-1773.21WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KQ76_9PHAE7.300e-1357.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K223_9PHAE1.900e-1242.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNN6_9PHAE3.470e-1258.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMV1_ECTSI1.660e-1154.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12773contigE-siliculosus-1a_F_contig12773:536..1128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size240
Model size249
Exons2
Ec32 orthologEc-00_002540.1
Ec32 ortholog descriptionWSC domain containing protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.KLT
EggNOG OGsKOG4157@1,KOG4157@2759,KOG4291@1,KOG4291@2759
EggNOG free text desc.Sushi, nidogen and EGF-like
KEGG koko:K22017
Seed eggNOG ortholog2880.D7FRS1
Seed ortholog evalue2.7e-09
Seed ortholog score67.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12773.1696.1prot_E-siliculosus-1a_F_contig12773.1696.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12773 545..1128 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927798.4230607-UTR-E-siliculosus-1a_F_contig12773:535..5441622927798.4230607-UTR-E-siliculosus-1a_F_contig12773:535..544Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12773 536..544 +
1696318684.1693792-UTR-E-siliculosus-1a_F_contig12773:535..5441696318684.1693792-UTR-E-siliculosus-1a_F_contig12773:535..544Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12773 536..544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927798.4331002-CDS-E-siliculosus-1a_F_contig12773:544..5891622927798.4331002-CDS-E-siliculosus-1a_F_contig12773:544..589Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12773 545..589 +
1696318684.1840034-CDS-E-siliculosus-1a_F_contig12773:544..5891696318684.1840034-CDS-E-siliculosus-1a_F_contig12773:544..589Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12773 545..589 +
1622927798.4455721-CDS-E-siliculosus-1a_F_contig12773:933..11281622927798.4455721-CDS-E-siliculosus-1a_F_contig12773:933..1128Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12773 934..1128 +
1696318684.1964939-CDS-E-siliculosus-1a_F_contig12773:933..11281696318684.1964939-CDS-E-siliculosus-1a_F_contig12773:933..1128Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12773 934..1128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12773.1696.1

>prot_E-siliculosus-1a_F_contig12773.1696.1 ID=prot_E-siliculosus-1a_F_contig12773.1696.1|Name=mRNA_E-siliculosus-1a_F_contig12773.1696.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=80bp
MDASYTHFGTQYGEECWCTGSLGTTETSTACTMDCAGNTAETCGGFDALT
LYEIVSDTTPATDDPTPAPVDDVSGIQYVG
back to top

mRNA from alignment at E-siliculosus-1a_F_contig12773:536..1128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12773.1696.1 ID=mRNA_E-siliculosus-1a_F_contig12773.1696.1|Name=mRNA_E-siliculosus-1a_F_contig12773.1696.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=593bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12773:536..1128+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGCTCTGGAATGGACGCATCGTACACCCACTTCGGCACCCAGTACGGGGA AGAGGTGGGTGGCGTCGGCTAGAGTATTTTTTGTGAATTCCGATGCTTGT AGTTATGCTCTTGTTGATGCGATGCCGTTGCCTTTGTTGTCGGTGCTGGT ACTGGTGACTGTCTTGTGACCTTTCTCGATTCGATTTCTGAAGAGAAGAG ACAACTCTGGCACTCGACCGCCATGAAGCCTCATCTCGTCCGTGTGCTCA TGAATCAAGGAGCTTGACACGACCCAGCTCCTGAATTGGGCCATCCGTTT GGAGGTCGATTTTCTCATTTCACCTCACCAGAACCCTGCTCTTCTTCCCT CTTGCCCACGTGCCCTCTCCTCTCCGCAAACCCATGTCTCGTCCTCAGTG CTGGTGCACAGGATCGCTTGGGACAACCGAGACCTCCACCGCCTGCACCA TGGACTGCGCTGGAAACACTGCGGAGACCTGCGGCGGCTTCGACGCCCTA ACACTGTACGAGATCGTCTCGGACACCACCCCTGCCACCGATGATCCTAC CCCGGCGCCCGTGGATGATGTAAGCGGGATACAGTATGTTGGC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12773:536..1128+

>mRNA_E-siliculosus-1a_F_contig12773.1696.1 ID=mRNA_E-siliculosus-1a_F_contig12773.1696.1|Name=mRNA_E-siliculosus-1a_F_contig12773.1696.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12773:536..1128+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACGCATCGTACACCCACTTCGGCACCCAGTACGGGGAAGAGATGGA
CGCATCGTACACCCACTTCGGCACCCAGTACGGGGAAGAGTGCTGGTGCA
CAGGATCGCTTGGGACAACCGAGACCTCCACCGCCTGCACCATGGACTGC
GCTGGAAACACTGCGGAGACCTGCGGCGGCTTCGACGCCCTAACACTGTA
CGAGATCGTCTCGGACACCACCCCTGCCACCGATGATCCTACCCCGGCGC
CCGTGGATGATGTAAGCGGGATACAGTATGTTGGCTGCTGGTGCACAGGA
TCGCTTGGGACAACCGAGACCTCCACCGCCTGCACCATGGACTGCGCTGG
AAACACTGCGGAGACCTGCGGCGGCTTCGACGCCCTAACACTGTACGAGA
TCGTCTCGGACACCACCCCTGCCACCGATGATCCTACCCCGGCGCCCGTG
GATGATGTAAGCGGGATACAGTATGTTGGC
back to top