mRNA_E-siliculosus-1a_F_contig1269.1650.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1650.1 vs. uniprot
Match: D7FP96_ECTSI (R3H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP96_ECTSI) HSP 1 Score: 634 bits (1634), Expect = 9.660e-219 Identity = 368/442 (83.26%), Postives = 371/442 (83.94%), Query Frame = 1
Query: 22 FLPFSYRTHTPTAPPRIQQGGINSAMYAPAFGPSSPREREAPVLIARHYETRDV-QRSPSHGGAVESVHH--DGRTGHDDEDDSLAVVFSADTGAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSAIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFAQTKQIPTEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGAGATLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNRGRVVRVMIPASTXXXXXXXXXXXGTAFAAPNAPLTEFVLRTRLQDYDRLREREGAXXXXXXXXXXXXXXXXXXCSSRGERARAITPTTVAAIA 1338
FLPF + G INSAMYAPAFG S PRE EAPVLIARHYETRD QRSPSHGGAVESVHH DGRTGHDDEDDSLAVVFSADTGAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSA RREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHF GGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEF QTKQI TEM XXXXXXXXX EAGAG TLLVPLGPSPFHRLLLHALCQYQKLRSKSEET RGR+VRVMIP S XXXXXXXX GTAFAAPNAPLTEFVLRTRLQDYDRLREREGA CSSRGERARAITPTTVA +A
Sbjct: 6 FLPFELPCPHTDSTSTCSTGRINSAMYAPAFGTSPPRE-EAPVLIARHYETRDDRQRSPSHGGAVESVHHHPDGRTGHDDEDDSLAVVFSADTGAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSATRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHFTGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFTQTKQILTEMPSALRSALASPPKVEVRKXXXXXXXXXAEAGAGPTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETKRGRIVRVMIPTSXXXXXXXXXS--GTAFAAPNAPLTEFVLRTRLQDYDRLREREGAARGEGRLSQASPSSAGAGCSSRGERARAITPTTVATVA 444
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1650.1 vs. uniprot
Match: A0A835ZHM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM7_9STRA) HSP 1 Score: 125 bits (315), Expect = 1.720e-27 Identity = 97/267 (36.33%), Postives = 129/267 (48.31%), Query Frame = 1
Query: 292 GAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSAIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAH-EEGEAE-------HLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFAQTKQIPTEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAG--AGATLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNRG 1062
GAGRA TP R++ + P ++ AAP+ A +EG Q GRR+QRRW NDN G+ K + G G A+ HL++ +WRSSLGDLV+D A +R + R G P P + GSG + + G WEDAEERF + +RLRD+V ++L L ++ +E L F + +P +AG GA L V L SPFHRLLLHA CQY L SKS+ G
Sbjct: 44 GAGRASTPVRVS---GSRAVTPQRAVY--AAPI----AAAQEGRPS-QHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPAL---SHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQL--------------QAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGG 283
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1650.1 vs. uniprot
Match: K3WHK0_GLOUD (R3H domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHK0_GLOUD) HSP 1 Score: 87.8 bits (216), Expect = 1.060e-14 Identity = 64/209 (30.62%), Postives = 104/209 (49.76%), Query Frame = 1
Query: 436 PAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRAAEVRESFRNG-MQPTPQKGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFAQTKQIPTEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGAGATLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNR 1059
P G+RKQ+RW ND+ G R E EH+++ WRS+ L +P+ E++ +FR G P+ QKG P R W DAEE FL ++RR R ++VR+ ++ A F+E +E ++ F Q +++P+E+ + L++PL S FHRL++H++CQ+ +RS++E R
Sbjct: 124 PVGQRKQQRWFNDHHFGN----RVATTRLEDLMEHMSINVEWRSNFQKLA-EPQNQELQTAFRKGKFTPSEQKG--EPKLRRRD----DWNDAEEMFLRIDRRARTLLVRSFQSFA--SFIEAVEYVVLHFIQWREVPSEIEVASGLLRVQTHPMELLKA----------SEKDVRLVIPLVDSAFHRLIIHSVCQFYGVRSRTEANRR 309
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1650.1 vs. uniprot
Match: A0A484E1D7_BRELC (R3H domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1D7_BRELC) HSP 1 Score: 85.1 bits (209), Expect = 6.060e-14 Identity = 68/252 (26.98%), Postives = 116/252 (46.03%), Query Frame = 1
Query: 292 GAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSAIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFAQTKQIPTEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGAGATLLVPLGPSPFHRLLLHALCQYQKLRSKSE 1047
G+ RA TPQ+ + + +H P++ + + + E P RKQ+RW ND+ G R E EH+ + WRS+ L +P+ ++ SFR G G S P + R+ KW AE+ F V+RR R +++R+ + A F+E +E ++ F Q +++P+E+ + G L++PL S FHRL++H++CQ+ +RS++E
Sbjct: 66 GSSRARTPQKCSSGSISSRSKRLVNVH----PMRSAGYLSKPDEL---PLSVRKQQRWFNDHHFGN----RAASTRLEDLMEHMEINVEWRSNFQKLA-EPQNESLQSSFRKGG------GVSDPPAVPRNHRKDKWNGAEKMFARVDRRARTLMLRSFNSFA--SFIEAVECVVLHFIQWREVPSELEVARPLLRMLKHPIEVTN----------DVGTSVRLILPLLDSAFHRLIIHSVCQFYGVRSRTE 287
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1650.1 vs. uniprot
Match: H3GQZ4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQZ4_PHYRM) HSP 1 Score: 83.6 bits (205), Expect = 2.240e-13 Identity = 72/268 (26.87%), Postives = 125/268 (46.64%), Query Frame = 1
Query: 280 SADTGAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSAIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFAQTKQIPTEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGAGATLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNRGRVVRVMI 1083
S D G+ RA TPQ+ R R +++ + ++ + + + E P G RKQ+RW ND+ G R E EH+ + WRS+ L +P+ E++ FR G + +AP R+ +W DAE+ F V+RR R +++R+ + A F+E +E ++ F Q +++P+E+ L++PL S FHRL++H++CQ+ +RS++E NR ++M+
Sbjct: 62 SNDNGSSRARTPQK--RGSESPLARSKRLINIHS--IRSAGYLSKPNEL---PVGVRKQQRWFNDHHFGN----RAASTRLEDLMEHMDINVEWRSNFQKLA-EPQNEELQTEFRQGGGARENRS-NAP----RNRRKDEWNDAEQMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWREVPSELEVATPLFRMLKHPIELMRANEKDMR----------LILPLMDSAFHRLIIHSVCQFYGVRSRTE-ANRRLSTKIMV 299
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1650.1 vs. uniprot
Match: D0MX30_PHYIT (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0MX30_PHYIT) HSP 1 Score: 83.2 bits (204), Expect = 3.160e-13 Identity = 78/299 (26.09%), Postives = 130/299 (43.48%), Query Frame = 1
Query: 292 GAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSAIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFAQTKQIPTEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGAGATLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNRGRVVRVMIPASTXXXXXXXXXXXGTAFAAPNAPLTEFVLRTRL 1188
G+ RA TPQ+ + +H P++ + + + E P G RKQ+RW ND+ G R E EH+ + WRS+ L +P+ +++ FR G AP R+ +W DAE+ F V+RR R +++R+ + AL F+E +E ++ F Q +++P+E+ L++PL S FHRL++H++CQ+ +RS++E NR ++M+ S A A L EF+ TR+
Sbjct: 70 GSSRARTPQKRGNESPLARSKRLINIH----PIRSAGYLSKPNEL---PVGVRKQQRWFNDHHFGN----RAASTRLEDLMEHMDISVEWRSNFQKLA-EPQNEDLQIEFRKGGGARVNNRPHAP----RNRRTDEWNDAEQMFTRVDRRARTLMLRSFSSFAL--FIEAVEYVVLYFIQWREVPSELEIATPLFRMLKHPIELMKANEKD----------VRLILPLLDSAFHRLIIHSVCQFYGVRSRTE-ANRRLNTKIMVLKSPKRKFL--------ADDAAQISLCEFIRETRI 331
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1650.1 vs. uniprot
Match: A0A8K1FEI2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEI2_PYTOL) HSP 1 Score: 80.9 bits (198), Expect = 1.610e-12 Identity = 58/208 (27.88%), Postives = 96/208 (46.15%), Query Frame = 1
Query: 436 PAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFAQTKQIPTEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGAGATLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNR 1059
P G RKQ+RW ND+ G + E EH+T+ WRS+ L +P +++ +FR G Q G + P + W DAEE F ++RR R +++R+ + V F+E +E ++ F Q +++P+E+ L +PL S FHRL++H++CQ+ +RS++E R
Sbjct: 109 PVGVRKQQRWFNDHHFGN----KAASTRLEDLMEHMTLNVEWRSNFQKLA-EPENKDLQVAFRKGRVQV-QNGSNQP----KWRRKDDWNDAEEMFTRIDRRARTLLMRSFNS--FVDFIEAVEHVVLHFVQWRELPSEIEITDGLSRVLAHPIELATVNEND----------VRLCIPLSDSAFHRLIVHSVCQFYGVRSRTEANRR 294
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1650.1 vs. uniprot
Match: A0A3M6VM59_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VM59_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.690e-12 Identity = 68/256 (26.56%), Postives = 115/256 (44.92%), Query Frame = 1
Query: 292 GAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSAIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFAQTKQIPTEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGAGATLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNR 1059
G+ RA TPQ+ + +H P++ + + + E P G RKQ+RW ND+ G R E EH+ + WRS+ L +P+ +++ FR G AP R+ +W DAE F V+RR R +++R+ + A F+E +E ++ F Q +++P+E+ E+ L++PL S FHRL++H++CQ+ +RS++E R
Sbjct: 66 GSSRARTPQKRGSESPLSRSKRLINIH----PIRSARYLSKPNEL---PLGTRKQQRWYNDHHFGN----RAASTRLEDLMEHMEINVKWRSNFQKLA-EPQNEDLQTEFRQGGGVRENNFFHAP----RNRRKDEWNDAELMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWQEVPSELEVAAPLFFVLKHPIELMK----------ESEKDVRLILPLLDSAFHRLIIHSVCQFYGIRSRTEANCR 293
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1650.1 vs. uniprot
Match: G4YQC7_PHYSP (R3H domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4YQC7_PHYSP) HSP 1 Score: 80.9 bits (198), Expect = 1.790e-12 Identity = 73/274 (26.64%), Postives = 126/274 (45.99%), Query Frame = 1
Query: 268 AVVFSADTGAG--RAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSAIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFAQTKQIPTEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGAGATLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNRGRVVRVMI 1083
AV S+ G G RA TPQ+ R R +++ P++ + + + E P G RKQ+RW ND+ G R E EH+ + WRS+ L +P+ +++ FR G AP R+ +W +AE+ F V+RR R +++R+ + A F+E +E ++ F Q +++P+E+ + L++PL S FHRL++H++CQ+ +RS++E NR ++M+
Sbjct: 59 AVQRSSSNGNGSSRARTPQK--RGSESPLARSKRLINIH--PIRSAGYLSKPNEL---PVGVRKQQRWFNDHHFGN----RAASTRLEDLMEHMDINVEWRSNFQKLA-EPQNEDLQTEFRKGGGAQENNRPHAP----RNRRKDEWNEAEQMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWREVPSELEVATPLFRMLKHPIELMRA----------SEKDVRLILPLLDSAFHRLIVHSVCQFYGVRSRTE-ANRRLNTKIMV 303
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1650.1 vs. uniprot
Match: A0A3F2RXZ1_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXZ1_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.350e-12 Identity = 69/264 (26.14%), Postives = 122/264 (46.21%), Query Frame = 1
Query: 292 GAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSAIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFAQTKQIPTEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGAGATLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNRGRVVRVMI 1083
G+ RA TPQ+ R R +++ P++ + + + E P G RKQ+RW ND+ G R E EH+ + WRS+ L +P+ +++ +FR G +A +R +W DAE+ F V+RR R +++R+ + A F+E +E ++ F Q +++P+E+ L++PL S FHRL++H++CQ+ +RS++E NR ++M+
Sbjct: 67 GSSRARTPQK--RGGESPLARSKRLINIH--PIRSAGYLSKPNEL---PVGVRKQQRWFNDHHFGN----RAASTRLEDLMEHMDINVEWRSNFQKLA-EPQNEDLQTAFRKGEGSHENNRSNA----SRCRRKDEWNDAEQMFSRVDRRARTLMLRSFHSFA--PFIEAVEYVVLHFIQWREVPSELEVATPLLRMLKHPIELLRVGEKD----------VRLVLPLLDSAFHRLIIHSVCQFYSVRSRTE-ANRRLNTKIMV 301 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1269.1650.1 >prot_E-siliculosus-1a_F_contig1269.1650.1 ID=prot_E-siliculosus-1a_F_contig1269.1650.1|Name=mRNA_E-siliculosus-1a_F_contig1269.1650.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=415bp MYAPAFGPSSPREREAPVLIARHYETRDVQRSPSHGGAVESVHHDGRTGHback to top mRNA from alignment at E-siliculosus-1a_F_contig1269:24282..31466- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1269.1650.1 ID=mRNA_E-siliculosus-1a_F_contig1269.1650.1|Name=mRNA_E-siliculosus-1a_F_contig1269.1650.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7185bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1269:24282..31466- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1269:24282..31466- >mRNA_E-siliculosus-1a_F_contig1269.1650.1 ID=mRNA_E-siliculosus-1a_F_contig1269.1650.1|Name=mRNA_E-siliculosus-1a_F_contig1269.1650.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2490bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1269:24282..31466- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |