mRNA_E-siliculosus-1a_F_contig12671.1641.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12671.1641.1
Unique NamemRNA_E-siliculosus-1a_F_contig12671.1641.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12671.1641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12671contigE-siliculosus-1a_F_contig12671:3..849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size132
Model size162
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12671.1641.1prot_E-siliculosus-1a_F_contig12671.1641.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12671 3..821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927791.0192246-CDS-E-siliculosus-1a_F_contig12671:2..651622927791.0192246-CDS-E-siliculosus-1a_F_contig12671:2..65Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12671 3..65 -
1696318680.4742756-CDS-E-siliculosus-1a_F_contig12671:2..651696318680.4742756-CDS-E-siliculosus-1a_F_contig12671:2..65Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12671 3..65 -
1622927791.0330017-CDS-E-siliculosus-1a_F_contig12671:752..8211622927791.0330017-CDS-E-siliculosus-1a_F_contig12671:752..821Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12671 753..821 -
1696318680.488517-CDS-E-siliculosus-1a_F_contig12671:752..8211696318680.488517-CDS-E-siliculosus-1a_F_contig12671:752..821Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12671 753..821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927791.0453575-UTR-E-siliculosus-1a_F_contig12671:821..8491622927791.0453575-UTR-E-siliculosus-1a_F_contig12671:821..849Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12671 822..849 -
1696318680.4997075-UTR-E-siliculosus-1a_F_contig12671:821..8491696318680.4997075-UTR-E-siliculosus-1a_F_contig12671:821..849Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12671 822..849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12671.1641.1

>prot_E-siliculosus-1a_F_contig12671.1641.1 ID=prot_E-siliculosus-1a_F_contig12671.1641.1|Name=mRNA_E-siliculosus-1a_F_contig12671.1641.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=44bp
MDRLECKGLPYSSSSKMMATAAQACCKPCPTTSHPMKRRQACGV
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mRNA from alignment at E-siliculosus-1a_F_contig12671:3..849-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12671.1641.1 ID=mRNA_E-siliculosus-1a_F_contig12671.1641.1|Name=mRNA_E-siliculosus-1a_F_contig12671.1641.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=847bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12671:3..849- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCACACAGCACGGGGCCAAACCGGATGGATCGGTTGGAGTGCAAGG
GTCTACCATACTCGTCGAGCTCTAAGATGATGGCCACAGCAGCTCAGGTG
CTTGTCGTGCAGACGTCCTATCCGAAGAGCTCAGCAACTCGAGCAACACT
GACGACCTGCGGCGAGTCTATTCGAGGATCCTGGAAATCAATTTGAATTT
TTTCAGCGATTTCTTGAGAGAATGTAGGTTGCCCTCAGAGGGCGCAGCCA
CGAGAACGAAGAGACGCAATTCACCACACGGTCTGCATAGCGACACATCC
AAAGTGTAGCAGTTGGTTGGGCGGAATCAGCCATGACTCCGGGCCGTGAG
CCTGACCCACAAATTCACGTGTAGCTCTCCCGCTCACCCGCTCTCTCATC
TCACGGTCTGTTCGCCGAGGTATGCAGCGTACACTGGTTCCGGTGCCGGT
TCGCGAGCGGAACCGTCAGCGAAGGTCGTTCTGGTTCTTTGCTGCTGTAC
GCTGCACACGTCCTCAGCTCCTCAGCCCTCCGCTCGGTGCCAGCTGCTCT
ATGCACATTGGTCGTTGGTGTTGAGCGTCTGATCTCCGAGCTCCGAACTC
CGGTGGTGCCATGGGAGGACGGGCTGGGTGATGTGATGCGCCTCTCTGCC
CCTCGTGCTTTCCGTCCCGCGTGCTCCACAGCCTTCCACACCAACTTGTC
CACTCACTTGTTTGTCCACATGGGTCGGCCTTCTGCCGTCTGCTGTGTCA
TGCTCCTGCTCTTGCCTACTTCTGTACGGACAAGGCTTGCTGCAAACCCT
GCCCAACGACTTCACACCCCATGAAAAGGAGGCAAGCCTGTGGAGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12671:3..849-

>mRNA_E-siliculosus-1a_F_contig12671.1641.1 ID=mRNA_E-siliculosus-1a_F_contig12671.1641.1|Name=mRNA_E-siliculosus-1a_F_contig12671.1641.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=264bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12671:3..849- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGATCGGTTGGAGTGCAAGGGTCTACCATACTCGTCGAGCTCTAAGAT
GATGGCCACAGCAGCTCAGATGGATCGGTTGGAGTGCAAGGGTCTACCAT
ACTCGTCGAGCTCTAAGATGATGGCCACAGCAGCTCAGGCTTGCTGCAAA
CCCTGCCCAACGACTTCACACCCCATGAAAAGGAGGCAAGCCTGTGGAGT
GGCTTGCTGCAAACCCTGCCCAACGACTTCACACCCCATGAAAAGGAGGC
AAGCCTGTGGAGTG
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