mRNA_E-siliculosus-1a_F_contig1265.1631.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1265.1631.1
Unique NamemRNA_E-siliculosus-1a_F_contig1265.1631.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1265contigE-siliculosus-1a_F_contig1265:19355..19704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size342
Model size352
Exons1
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-06_003240.3
Ec32 ortholog descriptionTatD family
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927785.8183365-UTR-E-siliculosus-1a_F_contig1265:19354..193621622927785.8183365-UTR-E-siliculosus-1a_F_contig1265:19354..19362Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1265 19355..19362 +
1696318679.4869227-UTR-E-siliculosus-1a_F_contig1265:19354..193621696318679.4869227-UTR-E-siliculosus-1a_F_contig1265:19354..19362Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1265 19355..19362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927785.8290431-CDS-E-siliculosus-1a_F_contig1265:19362..197041622927785.8290431-CDS-E-siliculosus-1a_F_contig1265:19362..19704Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 19363..19704 +
1696318679.5050385-CDS-E-siliculosus-1a_F_contig1265:19362..197041696318679.5050385-CDS-E-siliculosus-1a_F_contig1265:19362..19704Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 19363..19704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1265.1631.1prot_E-siliculosus-1a_F_contig1265.1631.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1265 19363..19704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1265.1631.1

>prot_E-siliculosus-1a_F_contig1265.1631.1 ID=prot_E-siliculosus-1a_F_contig1265.1631.1|Name=mRNA_E-siliculosus-1a_F_contig1265.1631.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=114bp
MSERTSPGLTPQVLIDTHCHVHVLVESGTGCCDATTTILKQPVHSSNPGS
SSGSYCDGSNEGRGVRAEITDSGEGRKGSVAAVLPEVVHMTMGIREDDWH
GAVAFAAGAEDLRR
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mRNA from alignment at E-siliculosus-1a_F_contig1265:19355..19704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1265.1631.1 ID=mRNA_E-siliculosus-1a_F_contig1265.1631.1|Name=mRNA_E-siliculosus-1a_F_contig1265.1631.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=350bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1265:19355..19704+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGAATCATGAGCGAGCGGACGTCGCCAGGCCTGACGCCCCAGGTGCTG
ATAGACACACATTGCCACGTTCACGTTTTGGTTGAGTCAGGGACAGGCTG
CTGCGACGCTACTACTACTATCCTGAAACAACCCGTTCACAGCAGCAACC
CCGGCAGCAGCAGCGGTAGTTACTGCGATGGCAGCAACGAGGGAAGAGGT
GTACGAGCTGAGATCACCGACAGCGGAGAGGGAAGGAAAGGCTCGGTGGC
GGCGGTTCTGCCTGAGGTGGTGCATATGACGATGGGAATCAGAGAGGACG
ACTGGCATGGAGCTGTGGCGTTCGCCGCTGGTGCGGAGGATCTCCGGCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1265:19355..19704+

>mRNA_E-siliculosus-1a_F_contig1265.1631.1 ID=mRNA_E-siliculosus-1a_F_contig1265.1631.1|Name=mRNA_E-siliculosus-1a_F_contig1265.1631.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1265:19355..19704+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCGAGCGGACGTCGCCAGGCCTGACGCCCCAGGTGCTGATAGACAC
ACATTGCCACGTTCACGTTTTGGTTGAGTCAGGGACAGGCTGCTGCGACG
CTACTACTACTATCCTGAAACAACCCGTTCACAGCAGCAACCCCGGCAGC
AGCAGCGGTAGTTACTGCGATGGCAGCAACGAGGGAAGAGGTGTACGAGC
TGAGATCACCGACAGCGGAGAGGGAAGGAAAGGCTCGGTGGCGGCGGTTC
TGCCTGAGGTGGTGCATATGACGATGGGAATCAGAGAGGACGACTGGCAT
GGAGCTGTGGCGTTCGCCGCTGGTGCGGAGGATCTCCGGCGCATGAGCGA
GCGGACGTCGCCAGGCCTGACGCCCCAGGTGCTGATAGACACACATTGCC
ACGTTCACGTTTTGGTTGAGTCAGGGACAGGCTGCTGCGACGCTACTACT
ACTATCCTGAAACAACCCGTTCACAGCAGCAACCCCGGCAGCAGCAGCGG
TAGTTACTGCGATGGCAGCAACGAGGGAAGAGGTGTACGAGCTGAGATCA
CCGACAGCGGAGAGGGAAGGAAAGGCTCGGTGGCGGCGGTTCTGCCTGAG
GTGGTGCATATGACGATGGGAATCAGAGAGGACGACTGGCATGGAGCTGT
GGCGTTCGCCGCTGGTGCGGAGGATCTCCGGCGC
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