mRNA_E-siliculosus-1a_F_contig12521.1566.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A3B0BQQ1_9FLAO (AraC family transcriptional regulator n=1 Tax=Ulvibacterium marinum TaxID=2419782 RepID=A0A3B0BQQ1_9FLAO) HSP 1 Score: 132 bits (333), Expect = 1.850e-35 Identity = 62/105 (59.05%), Postives = 86/105 (81.90%), Query Frame = 1
Query: 1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGEGEIHETR 315
MK +IE++DLDV DVV+DIA++L +YE DNNE+C ++PE +G G++KAVSF +G+G I++D LKKE+ L N+SSVQPLKIIFNRES+I+H F+G+ +I E R
Sbjct: 1 MKNKIEIRDLDVRDVVKDIADTLGTAYEEDNNEMCFDIPEEIGKGYVKAVSFSHGVGIIDLDIHLKKEVHLLTNQSSVQPLKIIFNRESSIEHRFEGKSKIREIR 105
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A3Q9FL64_9FLAO (AraC family transcriptional regulator n=2 Tax=unclassified Maribacter TaxID=2615042 RepID=A0A3Q9FL64_9FLAO) HSP 1 Score: 120 bits (302), Expect = 6.970e-31 Identity = 58/105 (55.24%), Postives = 82/105 (78.10%), Query Frame = 1
Query: 1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGEGEIHETR 315
M + E+++L V DVV+DIA+ L + YE +NNEVC+++PE +GTG IKA++F +G+G I +D RLK+E+R E+N+S VQPL+IIFN ESA HEF G+G+I E R
Sbjct: 1 MGNKKELRELSVVDVVKDIAKRLGVDYEEENNEVCVDIPEHIGTGNIKAIAFSHGMGMINLDMRLKEEVRFELNQSLVQPLEIIFNSESAFTHEFDGKGKIQEIR 105
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A5R8ZWH2_9FLAO (Helix-turn-helix transcriptional regulator n=1 Tax=Maribacter sp. ACAM166 TaxID=2508996 RepID=A0A5R8ZWH2_9FLAO) HSP 1 Score: 119 bits (298), Expect = 2.700e-30 Identity = 55/98 (56.12%), Postives = 79/98 (80.61%), Query Frame = 1
Query: 1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGE 294
M R E+K+L+V DVV+DIA+ L + YE +NNE+CL++PE GTG IKA+SF +G+G +++D RLKKE+R +N+S VQPL+I+FNRE+ I HEF+G+
Sbjct: 1 MSIRRELKELNVLDVVKDIAKRLNVDYEEENNEICLDIPEEAGTGHIKAISFSHGVGLMDVDIRLKKEVRFALNQSLVQPLEIVFNRETTILHEFEGQ 98
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A559NRR4_9FLAO (AraC-like DNA-binding protein n=1 Tax=Maribacter sp. MAR_2009_72 TaxID=1250050 RepID=A0A559NRR4_9FLAO) HSP 1 Score: 117 bits (294), Expect = 1.040e-29 Identity = 54/98 (55.10%), Postives = 80/98 (81.63%), Query Frame = 1
Query: 1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGE 294
M ++ E+K+L++ DVV+DIA L I Y+ +NNE+CL++P+ GTG I+A+SF +G+G +E+D RLKKE+R ++N+S VQPL+IIFNRES+I HEF G+
Sbjct: 1 MSSKKELKELNIVDVVKDIAARLRIEYQEENNEICLDIPDEAGTGHIRAISFSHGVGLMEVDIRLKKEVRFDLNKSLVQPLEIIFNRESSIFHEFNGQ 98
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A5B7SXN2_9FLAO (Helix-turn-helix transcriptional regulator n=1 Tax=Aggregatimonas sangjinii TaxID=2583587 RepID=A0A5B7SXN2_9FLAO) HSP 1 Score: 113 bits (283), Expect = 4.070e-28 Identity = 48/102 (47.06%), Postives = 79/102 (77.45%), Query Frame = 1
Query: 1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGEGEIH 306
M ++ ++DL+VHDV++D+A++ ISY+ +++E+C+ +P+ LG+G++KA+ F+NGLG +E D+ LKK+ +EM + + PLKIIFNRESA H+F G+ E H
Sbjct: 1 MVEKLGIRDLNVHDVIKDMAKNFGISYDEEHHEMCIRIPDELGSGYVKAIQFENGLGILESDYLLKKKFHIEMQKGVIHPLKIIFNRESAFDHKFNGKEEEH 102
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: UPI00056484B9 (AraC family transcriptional regulator n=1 Tax=Maribacter forsetii TaxID=444515 RepID=UPI00056484B9) HSP 1 Score: 112 bits (280), Expect = 1.170e-27 Identity = 50/98 (51.02%), Postives = 78/98 (79.59%), Query Frame = 1
Query: 1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGE 294
M T+ E+K+L+V DVV+DIA+ L ++Y+ +NNE+C+++PE GTG IKA+SF +G+G +++D LKK++R +N+S VQPL+I+FNRE + HEF G+
Sbjct: 1 MSTKKELKELNVVDVVKDIAQRLGVNYKEENNEICMDIPEEAGTGHIKAISFSHGVGIMDVDITLKKDVRFVLNQSLVQPLEIVFNREKTLLHEFDGQ 98
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A7C1QCS4_9FLAO (AraC family transcriptional regulator n=5 Tax=root TaxID=1 RepID=A0A7C1QCS4_9FLAO) HSP 1 Score: 112 bits (279), Expect = 1.640e-27 Identity = 49/98 (50.00%), Postives = 79/98 (80.61%), Query Frame = 1
Query: 1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGE 294
M T+ E+K+L+V DVV+DIA L++ Y+ +NNE+C+++PE G+G IKA++F +G+G +++D LKKE+R +N+S VQPL+I+FNRE+++ HEF G+
Sbjct: 1 MGTKKELKELNVVDVVKDIANRLQVEYKEENNEICMDIPEEAGSGHIKAINFSHGVGVMDVDITLKKEVRFVLNQSLVQPLEIVFNRETSLMHEFDGQ 98
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A223V7F1_9FLAO (AraC family transcriptional regulator n=2 Tax=Maribacter TaxID=252356 RepID=A0A223V7F1_9FLAO) HSP 1 Score: 111 bits (278), Expect = 2.270e-27 Identity = 50/103 (48.54%), Postives = 79/103 (76.70%), Query Frame = 1
Query: 1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGEGEIHE 309
M + E+K+L+V DVV+DIA L + YE++NNE+C+++PE GTG IKA+SF +G+G ++++ RLK E+ E+N+S VQPL++I+NRES +H F G+ + H+
Sbjct: 1 MGEKKELKELNVVDVVKDIANRLRVDYETENNEICIDIPEDAGTGTIKAMSFSHGVGLMDLNVRLKNEIHFELNQSLVQPLELIYNRESQFRHRFNGKEDAHD 103
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A1H7LQJ0_9FLAO (Transcriptional regulator, AraC family n=1 Tax=Maribacter orientalis TaxID=228957 RepID=A0A1H7LQJ0_9FLAO) HSP 1 Score: 111 bits (278), Expect = 2.300e-27 Identity = 49/98 (50.00%), Postives = 79/98 (80.61%), Query Frame = 1
Query: 1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGE 294
M + E+ +L+V DVV+DIA L++ Y+ +NNE+C+++PE +GTG IKA++F +G+G +++D RLKKE+R +N+S V+PL+IIFNRE+ + HEF+G+
Sbjct: 1 MSAKKELNELNVIDVVKDIANRLKVDYQEENNEICMDMPEEVGTGHIKAITFSHGVGVMDVDIRLKKEVRFVLNQSLVKPLEIIFNRETTLLHEFEGQ 98
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A1H4KSD7_9FLAO (Transcriptional regulator, AraC family n=9 Tax=Maribacter TaxID=252356 RepID=A0A1H4KSD7_9FLAO) HSP 1 Score: 111 bits (278), Expect = 2.340e-27 Identity = 51/105 (48.57%), Postives = 80/105 (76.19%), Query Frame = 1
Query: 1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGEGEIHETR 315
M T+ E K+L+V DVV+DIA L++ Y +NNE+C+++P+ GTG IKA+SF +G+G +++D LKK+ R +N+S VQPL+I+FNRE +I HEF+G+ ++ E +
Sbjct: 1 MGTKKEFKELNVVDVVKDIAHRLDVDYREENNEICMDIPKEAGTGHIKAISFSHGVGILDVDITLKKDTRFVLNQSLVQPLEIVFNREKSIWHEFEGQEKLTEIK 105 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig12521.1566.1 >prot_E-siliculosus-1a_F_contig12521.1566.1 ID=prot_E-siliculosus-1a_F_contig12521.1566.1|Name=mRNA_E-siliculosus-1a_F_contig12521.1566.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=105bp MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVback to top mRNA from alignment at E-siliculosus-1a_F_contig12521:1244..1558+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig12521.1566.1 ID=mRNA_E-siliculosus-1a_F_contig12521.1566.1|Name=mRNA_E-siliculosus-1a_F_contig12521.1566.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=315bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12521:1244..1558+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12521:1244..1558+ >mRNA_E-siliculosus-1a_F_contig12521.1566.1 ID=mRNA_E-siliculosus-1a_F_contig12521.1566.1|Name=mRNA_E-siliculosus-1a_F_contig12521.1566.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12521:1244..1558+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |