mRNA_E-siliculosus-1a_F_contig12521.1566.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12521.1566.1
Unique NamemRNA_E-siliculosus-1a_F_contig12521.1566.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A3B0BQQ1_9FLAO (AraC family transcriptional regulator n=1 Tax=Ulvibacterium marinum TaxID=2419782 RepID=A0A3B0BQQ1_9FLAO)

HSP 1 Score: 132 bits (333), Expect = 1.850e-35
Identity = 62/105 (59.05%), Postives = 86/105 (81.90%), Query Frame = 1
Query:    1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGEGEIHETR 315
            MK +IE++DLDV DVV+DIA++L  +YE DNNE+C ++PE +G G++KAVSF +G+G I++D  LKKE+ L  N+SSVQPLKIIFNRES+I+H F+G+ +I E R
Sbjct:    1 MKNKIEIRDLDVRDVVKDIADTLGTAYEEDNNEMCFDIPEEIGKGYVKAVSFSHGVGIIDLDIHLKKEVHLLTNQSSVQPLKIIFNRESSIEHRFEGKSKIREIR 105          
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A3Q9FL64_9FLAO (AraC family transcriptional regulator n=2 Tax=unclassified Maribacter TaxID=2615042 RepID=A0A3Q9FL64_9FLAO)

HSP 1 Score: 120 bits (302), Expect = 6.970e-31
Identity = 58/105 (55.24%), Postives = 82/105 (78.10%), Query Frame = 1
Query:    1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGEGEIHETR 315
            M  + E+++L V DVV+DIA+ L + YE +NNEVC+++PE +GTG IKA++F +G+G I +D RLK+E+R E+N+S VQPL+IIFN ESA  HEF G+G+I E R
Sbjct:    1 MGNKKELRELSVVDVVKDIAKRLGVDYEEENNEVCVDIPEHIGTGNIKAIAFSHGMGMINLDMRLKEEVRFELNQSLVQPLEIIFNSESAFTHEFDGKGKIQEIR 105          
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A5R8ZWH2_9FLAO (Helix-turn-helix transcriptional regulator n=1 Tax=Maribacter sp. ACAM166 TaxID=2508996 RepID=A0A5R8ZWH2_9FLAO)

HSP 1 Score: 119 bits (298), Expect = 2.700e-30
Identity = 55/98 (56.12%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGE 294
            M  R E+K+L+V DVV+DIA+ L + YE +NNE+CL++PE  GTG IKA+SF +G+G +++D RLKKE+R  +N+S VQPL+I+FNRE+ I HEF+G+
Sbjct:    1 MSIRRELKELNVLDVVKDIAKRLNVDYEEENNEICLDIPEEAGTGHIKAISFSHGVGLMDVDIRLKKEVRFALNQSLVQPLEIVFNRETTILHEFEGQ 98          
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A559NRR4_9FLAO (AraC-like DNA-binding protein n=1 Tax=Maribacter sp. MAR_2009_72 TaxID=1250050 RepID=A0A559NRR4_9FLAO)

HSP 1 Score: 117 bits (294), Expect = 1.040e-29
Identity = 54/98 (55.10%), Postives = 80/98 (81.63%), Query Frame = 1
Query:    1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGE 294
            M ++ E+K+L++ DVV+DIA  L I Y+ +NNE+CL++P+  GTG I+A+SF +G+G +E+D RLKKE+R ++N+S VQPL+IIFNRES+I HEF G+
Sbjct:    1 MSSKKELKELNIVDVVKDIAARLRIEYQEENNEICLDIPDEAGTGHIRAISFSHGVGLMEVDIRLKKEVRFDLNKSLVQPLEIIFNRESSIFHEFNGQ 98          
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A5B7SXN2_9FLAO (Helix-turn-helix transcriptional regulator n=1 Tax=Aggregatimonas sangjinii TaxID=2583587 RepID=A0A5B7SXN2_9FLAO)

HSP 1 Score: 113 bits (283), Expect = 4.070e-28
Identity = 48/102 (47.06%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGEGEIH 306
            M  ++ ++DL+VHDV++D+A++  ISY+ +++E+C+ +P+ LG+G++KA+ F+NGLG +E D+ LKK+  +EM +  + PLKIIFNRESA  H+F G+ E H
Sbjct:    1 MVEKLGIRDLNVHDVIKDMAKNFGISYDEEHHEMCIRIPDELGSGYVKAIQFENGLGILESDYLLKKKFHIEMQKGVIHPLKIIFNRESAFDHKFNGKEEEH 102          
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: UPI00056484B9 (AraC family transcriptional regulator n=1 Tax=Maribacter forsetii TaxID=444515 RepID=UPI00056484B9)

HSP 1 Score: 112 bits (280), Expect = 1.170e-27
Identity = 50/98 (51.02%), Postives = 78/98 (79.59%), Query Frame = 1
Query:    1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGE 294
            M T+ E+K+L+V DVV+DIA+ L ++Y+ +NNE+C+++PE  GTG IKA+SF +G+G +++D  LKK++R  +N+S VQPL+I+FNRE  + HEF G+
Sbjct:    1 MSTKKELKELNVVDVVKDIAQRLGVNYKEENNEICMDIPEEAGTGHIKAISFSHGVGIMDVDITLKKDVRFVLNQSLVQPLEIVFNREKTLLHEFDGQ 98          
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A7C1QCS4_9FLAO (AraC family transcriptional regulator n=5 Tax=root TaxID=1 RepID=A0A7C1QCS4_9FLAO)

HSP 1 Score: 112 bits (279), Expect = 1.640e-27
Identity = 49/98 (50.00%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGE 294
            M T+ E+K+L+V DVV+DIA  L++ Y+ +NNE+C+++PE  G+G IKA++F +G+G +++D  LKKE+R  +N+S VQPL+I+FNRE+++ HEF G+
Sbjct:    1 MGTKKELKELNVVDVVKDIANRLQVEYKEENNEICMDIPEEAGSGHIKAINFSHGVGVMDVDITLKKEVRFVLNQSLVQPLEIVFNRETSLMHEFDGQ 98          
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A223V7F1_9FLAO (AraC family transcriptional regulator n=2 Tax=Maribacter TaxID=252356 RepID=A0A223V7F1_9FLAO)

HSP 1 Score: 111 bits (278), Expect = 2.270e-27
Identity = 50/103 (48.54%), Postives = 79/103 (76.70%), Query Frame = 1
Query:    1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGEGEIHE 309
            M  + E+K+L+V DVV+DIA  L + YE++NNE+C+++PE  GTG IKA+SF +G+G ++++ RLK E+  E+N+S VQPL++I+NRES  +H F G+ + H+
Sbjct:    1 MGEKKELKELNVVDVVKDIANRLRVDYETENNEICIDIPEDAGTGTIKAMSFSHGVGLMDLNVRLKNEIHFELNQSLVQPLELIYNRESQFRHRFNGKEDAHD 103          
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A1H7LQJ0_9FLAO (Transcriptional regulator, AraC family n=1 Tax=Maribacter orientalis TaxID=228957 RepID=A0A1H7LQJ0_9FLAO)

HSP 1 Score: 111 bits (278), Expect = 2.300e-27
Identity = 49/98 (50.00%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGE 294
            M  + E+ +L+V DVV+DIA  L++ Y+ +NNE+C+++PE +GTG IKA++F +G+G +++D RLKKE+R  +N+S V+PL+IIFNRE+ + HEF+G+
Sbjct:    1 MSAKKELNELNVIDVVKDIANRLKVDYQEENNEICMDMPEEVGTGHIKAITFSHGVGVMDVDIRLKKEVRFVLNQSLVKPLEIIFNRETTLLHEFEGQ 98          
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Match: A0A1H4KSD7_9FLAO (Transcriptional regulator, AraC family n=9 Tax=Maribacter TaxID=252356 RepID=A0A1H4KSD7_9FLAO)

HSP 1 Score: 111 bits (278), Expect = 2.340e-27
Identity = 51/105 (48.57%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAVSFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGEGEIHETR 315
            M T+ E K+L+V DVV+DIA  L++ Y  +NNE+C+++P+  GTG IKA+SF +G+G +++D  LKK+ R  +N+S VQPL+I+FNRE +I HEF+G+ ++ E +
Sbjct:    1 MGTKKEFKELNVVDVVKDIAHRLDVDYREENNEICMDIPKEAGTGHIKAISFSHGVGILDVDITLKKDTRFVLNQSLVQPLEIVFNREKSIWHEFEGQEKLTEIK 105          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B0BQQ1_9FLAO1.850e-3559.05AraC family transcriptional regulator n=1 Tax=Ulvi... [more]
A0A3Q9FL64_9FLAO6.970e-3155.24AraC family transcriptional regulator n=2 Tax=uncl... [more]
A0A5R8ZWH2_9FLAO2.700e-3056.12Helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A559NRR4_9FLAO1.040e-2955.10AraC-like DNA-binding protein n=1 Tax=Maribacter s... [more]
A0A5B7SXN2_9FLAO4.070e-2847.06Helix-turn-helix transcriptional regulator n=1 Tax... [more]
UPI00056484B91.170e-2751.02AraC family transcriptional regulator n=1 Tax=Mari... [more]
A0A7C1QCS4_9FLAO1.640e-2750.00AraC family transcriptional regulator n=5 Tax=root... [more]
A0A223V7F1_9FLAO2.270e-2748.54AraC family transcriptional regulator n=2 Tax=Mari... [more]
A0A1H7LQJ0_9FLAO2.300e-2750.00Transcriptional regulator, AraC family n=1 Tax=Mar... [more]
A0A1H4KSD7_9FLAO2.340e-2748.57Transcriptional regulator, AraC family n=9 Tax=Mar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12521contigE-siliculosus-1a_F_contig12521:1244..1558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size315
Model size315
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelMaribacter
COG Functional cat.K
EggNOG OGs1HX76@117743,2PI35@252356,4NGI6@976,COG2207@1,COG2207@2
EggNOG free text desc.helix_turn_helix, arabinose operon control protein
Seed eggNOG ortholog1392498.JQLH01000001_gene75
Seed ortholog evalue3.2e-23
Seed ortholog score114.4
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927774.8100555-CDS-E-siliculosus-1a_F_contig12521:1243..15581622927774.8100555-CDS-E-siliculosus-1a_F_contig12521:1243..1558Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12521 1244..1558 +
1696318674.705512-CDS-E-siliculosus-1a_F_contig12521:1243..15581696318674.705512-CDS-E-siliculosus-1a_F_contig12521:1243..1558Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12521 1244..1558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12521.1566.1prot_E-siliculosus-1a_F_contig12521.1566.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12521 1244..1558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12521.1566.1

>prot_E-siliculosus-1a_F_contig12521.1566.1 ID=prot_E-siliculosus-1a_F_contig12521.1566.1|Name=mRNA_E-siliculosus-1a_F_contig12521.1566.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=105bp
MKTRIEVKDLDVHDVVRDIAESLEISYESDNNEVCLNVPETLGTGFIKAV
SFDNGLGTIEMDFRLKKELRLEMNESSVQPLKIIFNRESAIKHEFKGEGE
IHETR
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mRNA from alignment at E-siliculosus-1a_F_contig12521:1244..1558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12521.1566.1 ID=mRNA_E-siliculosus-1a_F_contig12521.1566.1|Name=mRNA_E-siliculosus-1a_F_contig12521.1566.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=315bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12521:1244..1558+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAAACGAGAATTGAGGTTAAAGACTTAGATGTGCATGATGTTGTTCG AGACATTGCCGAGAGTTTAGAAATATCGTACGAATCCGATAACAATGAAG TTTGTTTGAACGTTCCTGAGACTTTGGGTACTGGTTTTATTAAAGCGGTT TCATTTGACAATGGTTTAGGTACCATTGAAATGGATTTCAGATTAAAAAA AGAGCTCCGTTTGGAAATGAATGAGTCGTCAGTACAACCCTTAAAGATTA TTTTTAACAGAGAGTCTGCGATCAAGCATGAATTTAAAGGAGAAGGAGAA ATACATGAAACCAGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12521:1244..1558+

>mRNA_E-siliculosus-1a_F_contig12521.1566.1 ID=mRNA_E-siliculosus-1a_F_contig12521.1566.1|Name=mRNA_E-siliculosus-1a_F_contig12521.1566.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12521:1244..1558+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAAACGAGAATTGAGGTTAAAGACTTAGATGTGCATGATGTTGTTCG
AGACATTGCCGAGAGTTTAGAAATATCGTACGAATCCGATAACAATGAAG
TTTGTTTGAACGTTCCTGAGACTTTGGGTACTGGTTTTATTAAAGCGGTT
TCATTTGACAATGGTTTAGGTACCATTGAAATGGATTTCAGATTAAAAAA
AGAGCTCCGTTTGGAAATGAATGAGTCGTCAGTACAACCCTTAAAGATTA
TTTTTAACAGAGAGTCTGCGATCAAGCATGAATTTAAAGGAGAAGGAGAA
ATACATGAAACCAGAATGAAAACGAGAATTGAGGTTAAAGACTTAGATGT
GCATGATGTTGTTCGAGACATTGCCGAGAGTTTAGAAATATCGTACGAAT
CCGATAACAATGAAGTTTGTTTGAACGTTCCTGAGACTTTGGGTACTGGT
TTTATTAAAGCGGTTTCATTTGACAATGGTTTAGGTACCATTGAAATGGA
TTTCAGATTAAAAAAAGAGCTCCGTTTGGAAATGAATGAGTCGTCAGTAC
AACCCTTAAAGATTATTTTTAACAGAGAGTCTGCGATCAAGCATGAATTT
AAAGGAGAAGGAGAAATACATGAAACCAGA
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