mRNA_E-siliculosus-1a_F_contig1249.1546.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A6H5KI28_9PHAE (EngB-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KI28_9PHAE) HSP 1 Score: 484 bits (1246), Expect = 1.300e-169 Identity = 242/246 (98.37%), Postives = 242/246 (98.37%), Query Frame = 2
Query: 101 MRSSAAFRRLRGQLSVATSSPWVWVATGVDPASAIHPPSRKRGSPLRGEYVSPASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTLYGVSD 838
MRSSAAFRRLRGQLSVATSSPWVWVATGVDPASAIHPP RKRG LRGEYVSPAS NHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTLYGVSD
Sbjct: 1 MRSSAAFRRLRGQLSVATSSPWVWVATGVDPASAIHPPPRKRGLSLRGEYVSPASFNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTLYGVSD 246
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A835YYM3_9STRA (YihA2, YihA/EngB-like GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM3_9STRA) HSP 1 Score: 206 bits (524), Expect = 2.250e-60 Identity = 108/238 (45.38%), Postives = 146/238 (61.34%), Query Frame = 2
Query: 152 TSSPWVWVATGVDPASAIH--PPSRKRGS-PLRGEYVSPASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALR-----EGGAESPQA--FLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTLYGVS 835
T SPWVW G+D SA+H P RG ++ + P +LP AG PEVAF GRSN GKSTLVG L+ N KLVRASK PGCT+TVNYF L + G+E +A ++VDLPGYGFA+ + V+ W AV ++ R ++LRRTFVL+DGRHG++ DE M++ L V +VLTK D+ + + +EG + A H A P+VH +SA G G+ + +T+Y V+
Sbjct: 3 TKSPWVWTMKGMDADSAVHRTDPDIARGCRAMQAGFFPPNLFKFDLPKAGVPEVAFCGRSNVGKSTLVGTLINNTKLVRASKEPGCTRTVNYFGLTAPTRIKKGSEVDRAAVYMVDLPGYGFAKAPVQEVQAWTAAVEGFIVNRDCALLRRTFVLIDGRHGVKQHDEDMMTLLDDHGVSYQIVLTKADQLTKRDIAVVVEGVMRAAARHAACYPVVHVVSARDGHGVLQLLDTIYYVT 240
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A482SLS6_9ARCH (Probable GTP-binding protein EngB n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLS6_9ARCH) HSP 1 Score: 170 bits (430), Expect = 3.270e-46 Identity = 90/206 (43.69%), Postives = 127/206 (61.65%), Query Frame = 2
Query: 206 HPPSRKRGSPLRGEYVSPASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQA-FLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVH--HPATLPIVHCISAHKGQGMGEFQ 814
H K+ L Y+ P+ NH+LP+AG PEVAF+GRSN GKS+LV LLG L+R SK PGCT T+NY+AL +G A A +L+D+PGYGFA+ +K+ + W + V SYL R +LRR FVL+D R G+Q D +M+ L+ + VVLTK D S ++ + L F + + + LP+VH +SA KG G+ + +
Sbjct: 61 HKSDAKKIFSLNPTYIPPSYFNHQLPSAGRPEVAFVGRSNVGKSSLVEALLGTKGLLRISKEPGCTTTLNYYALAKGSALDDHACYLIDMPGYGFAKIAKQQQKKWLEIVNSYLMNRDQLLLRRVFVLIDSRRGVQMQDVEMMEMLNHAHIPYQVVLTKKDLVSDKEIKEKLFELFCVISRKKNNSCLPLVHVVSALKGLGLEDLR 266
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A7S3GRN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRN4_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.880e-44 Identity = 92/231 (39.83%), Postives = 131/231 (56.71%), Query Frame = 2
Query: 146 VATSSPWVWVATGVDPASAIHP--PSRKRGSPLRGEYVSPASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFAL-REGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQL--AVHHPATLPIVHCISAHKGQGMGEFQNTL 823
V T++ ++ T +DP + P+ K + Y+ P+ LN+ LPT G PE AF+GRSN GKS+L+ L+GN KLV SK PGCT+++NY+ L +E + A+ VDLPGYGFAR+SK + W + Y+ R SVLRR FVLVD R G+ D M+ L+ + +V TKVD S +L SL AF + + A LP + +S G+ F+ T+
Sbjct: 37 VQTTTSSIYTTTELDPQYDLTKWGPAAKTLFSMHPSYIHPSELNYGLPTNGVPEFAFVGRSNVGKSSLIDALMGNRKLVNVSKEPGCTRSINYYGLSKEKTGKDYSAYFVDLPGYGFARKSKEEQQKWTNMIHQYVSSRDQSVLRRVFVLVDSRRGINNHDATMMDTLNKTFIPYQIVFTKVDLTSKQELYTSLGQAFSVINSSMGGACLPFIPTLSTVDKTGLDHFKLTM 267
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A1G7WQA0_9PROT (Probable GTP-binding protein EngB n=1 Tax=Roseospirillum parvum TaxID=83401 RepID=A0A1G7WQA0_9PROT) HSP 1 Score: 158 bits (399), Expect = 2.340e-42 Identity = 86/192 (44.79%), Postives = 111/192 (57.81%), Query Frame = 2
Query: 248 YVSPASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTL 823
+V A+ N +LP AG PEVAFIGRSN GKS+L+ L G+ L R S PG T+ +N+F L + + LVDLPGYG+A+ K+ V WN + +YL+GR+ LRRT VL+D RHGL+ D M+ L V VLTK DK P L L+ Q HPA P + SA KG G+ E + TL
Sbjct: 29 FVRGATKNADLPPAGPPEVAFIGRSNVGKSSLINALTGHNGLARTSVTPGRTQQINFFDL------AGRLTLVDLPGYGYAKAPKKLVESWNGLIRNYLKGRAP--LRRTLVLIDARHGLKDSDHAMMDLLDKAAVNYQAVLTKADKIGPTSLATRLKDTAQQLARHPAAHPEIAATSAEKGTGIAELRATL 212
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A6N6VR93_9HYPH (Probable GTP-binding protein EngB n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VR93_9HYPH) HSP 1 Score: 156 bits (394), Expect = 3.500e-41 Identity = 84/187 (44.92%), Postives = 113/187 (60.43%), Query Frame = 2
Query: 278 LPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTLYGVSD 838
LP G PE+AF GRSN GKS+LV L G L R S PG T+ +N+FAL + G +P LVDLPGYG+ARE+K V W + V YL GR+S LRR VL+D RHGL+ +D + + L + V VVLTK+DK P+++ LE + H A P V S+ KG+G+ E + + G++D
Sbjct: 62 LPPMGGPEIAFAGRSNVGKSSLVNALTGRSTLARTSNTPGRTQQLNFFALGQPG--NPALILVDLPGYGYARETKATVAAWTRLVMDYLRGRTS--LRRVIVLIDARHGLKENDHETMKLLDTAAVSYQVVLTKIDKLKPSEVAPRLEEVREGIRRHVAAHPTVIATSSVKGEGIAELRAEIAGLAD 244
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A0F2KYA2_9PROT (Probable GTP-binding protein EngB n=1 Tax=Azospirillum thiophilum TaxID=528244 RepID=A0A0F2KYA2_9PROT) HSP 1 Score: 154 bits (388), Expect = 1.200e-40 Identity = 85/194 (43.81%), Postives = 119/194 (61.34%), Query Frame = 2
Query: 245 EYVSPASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVH-HPATLPIVHCISAHKGQGMGEFQNTL 823
++V A+ ++LP A PEVAF GRSN GKS+LV L G L R S PG T+ +N+F L + + LVD+PGYG+A+ESK V WN V +L GR + LRR VL+D RHGL+P+D+++++ L V +VVLTK DK PA+L + A +L + HPA P +H S+ KG G+ E + +L
Sbjct: 35 DFVWGANALNQLPEADLPEVAFAGRSNVGKSSLVNALTGRKTLARTSNTPGRTQQLNFFNLGD------RLKLVDMPGYGYAKESKEKVEAWNDMVRRFLRGRVT--LRRALVLIDARHGLKPNDDEIMAMLDRTAVPYVVVLTKADKVKPAEL-DKVRKATELGLKKHPAAFPDIHVTSSEKGTGIAELRASL 219
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A0P0EPD7_AZOBR (Probable GTP-binding protein EngB n=11 Tax=Azospirillum TaxID=191 RepID=A0A0P0EPD7_AZOBR) HSP 1 Score: 152 bits (385), Expect = 2.700e-40 Identity = 83/193 (43.01%), Postives = 112/193 (58.03%), Query Frame = 2
Query: 245 EYVSPASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTL 823
+++ A +LP A PEVAF GRSN GKS+LV L G L R S PG T+ +N+F L + LVD+PGYG+A+ESK + WN V +L GR + LRR VLVD RHGL+P+DE++++ L V +VVLTK DK +L + + HPA P +H SA KGQG+ E + +L
Sbjct: 29 DFIWGAQTAEQLPEADLPEVAFAGRSNVGKSSLVNALTGRKTLARTSNTPGRTQQLNFFNLGN------RLKLVDMPGYGYAKESKEKIEIWNDMVRRFLRGRVT--LRRALVLVDSRHGLKPNDEEIMTMLDQAAVPYVVVLTKSDKVRSQELAEVSKRTVAAIKKHPAAFPEIHATSAEKGQGIAELRASL 213
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A1I7NU75_9HYPH (Probable GTP-binding protein EngB n=4 Tax=Hyphomicrobium TaxID=81 RepID=A0A1I7NU75_9HYPH) HSP 1 Score: 150 bits (379), Expect = 1.920e-39 Identity = 81/192 (42.19%), Postives = 110/192 (57.29%), Query Frame = 2
Query: 266 LNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTLYGVSDS 841
L+H LP PE+AF GRSN GKS+L+ L+G +L RAS PG T+ +N+F E FLVD+PGYGFA K V WN+ + +YL GR + L R F+L+D RHGL+P D+++L L V VVLTK DK P L + +E + HPA P + S+ KG G E + T+ + +S
Sbjct: 32 LDH-LPPDDRPEIAFAGRSNVGKSSLINALVGQLRLARASNTPGRTQELNFFTDPER-----DLFLVDMPGYGFAEAPKEKVAAWNKVIRAYLAGRRT--LLRVFLLIDARHGLKPPDDEILDLLDGAAVSYQVVLTKADKIKPTDLEKVMERTLKALAKHPAAFPAIIATSSEKGLGFEELRGTIAQLLES 215
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: UPI001FE65B25 (ribosome biogenesis GTP-binding protein YihA/YsxC n=1 Tax=Azospirillum rugosum TaxID=416170 RepID=UPI001FE65B25) HSP 1 Score: 149 bits (377), Expect = 3.080e-39 Identity = 84/188 (44.68%), Postives = 111/188 (59.04%), Query Frame = 2
Query: 260 ASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTL 823
A +LP A PEVAF GRSN GKS+LV L G L R S PG T+ +N+F L GG + LVD+PGYG+A+ESK V WN V YL+GR + LRR VL+D RHGL+P+D+++++ L V +VVLTK DK +L + + HPA P VH S+ KG G+ E + +L
Sbjct: 26 AQTPDQLPEADLPEVAFAGRSNVGKSSLVNALTGRKTLARTSNTPGRTQQLNFFDL--GG----RLKLVDMPGYGYAKESKEKVEAWNDMVRRYLKGRVT--LRRALVLIDSRHGLKPNDDEIMTMLDKAAVPYVVVLTKADKVRSQELAEVTKRCEAGLKKHPAAFPQVHITSSEKGLGIAELRASL 205 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1249.1546.1 >prot_E-siliculosus-1a_F_contig1249.1546.1 ID=prot_E-siliculosus-1a_F_contig1249.1546.1|Name=mRNA_E-siliculosus-1a_F_contig1249.1546.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=248bp MRSSAAFRRLRGQLSVATSSPWVWVATGVDPASAIHPPSRKRGSPLRGEYback to top mRNA from alignment at E-siliculosus-1a_F_contig1249:12721..14899- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1249.1546.1 ID=mRNA_E-siliculosus-1a_F_contig1249.1546.1|Name=mRNA_E-siliculosus-1a_F_contig1249.1546.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2179bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1249:12721..14899- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1249:12721..14899- >mRNA_E-siliculosus-1a_F_contig1249.1546.1 ID=mRNA_E-siliculosus-1a_F_contig1249.1546.1|Name=mRNA_E-siliculosus-1a_F_contig1249.1546.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1488bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1249:12721..14899- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |