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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1240.1507.1 vs. uniprot
Match: D8LU01_ECTSI (GT23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU01_ECTSI) HSP 1 Score: 426 bits (1096), Expect = 1.260e-150 Identity = 205/211 (97.16%), Postives = 205/211 (97.16%), Query Frame = 1
Query: 1 GVDSRKDMAVFSNEWMEEFGVGALGCAGSAIDAYEWRNAGYGSNINFLTIVWANAMMAGRQDLAVVVRTDEWFPRTICNVTSNGEETRGWPCFFAEVPHLCAFDADQMLVDHLHSYLQPWFKADIQHILDEPDIAEMRNGKYVGMHIRRTDKANEIKLTKTEVYFRKVAQYLRSSPGGLRAADITGLWLSTDEVSVFNEVGGLRAPSPAYI 633
GVDSRKDMAVFSNEWMEEFG GALGC GSAIDAYEWRNAGYGSNINFLTIVWANAMMAGRQDLAVVVRTDEWFPRTICNVTS GEETRGWPCFFAEVPHLCAFDADQMLVDHLHSYLQPWFKADIQ ILDEPDIAEMRNGKYVGMHIRRTDKANE KLTKTEVYFRKVAQYLRSSPGGLRAADITGLWLSTDEVSVFNEVGGLRA SPAYI
Sbjct: 30 GVDSRKDMAVFSNEWMEEFGSGALGCVGSAIDAYEWRNAGYGSNINFLTIVWANAMMAGRQDLAVVVRTDEWFPRTICNVTSYGEETRGWPCFFAEVPHLCAFDADQMLVDHLHSYLQPWFKADIQRILDEPDIAEMRNGKYVGMHIRRTDKANETKLTKTEVYFRKVAQYLRSSPGGLRAADITGLWLSTDEVSVFNEVGGLRASSPAYI 240
BLAST of mRNA_E-siliculosus-1a_F_contig1240.1507.1 vs. uniprot
Match: D8LU00_ECTSI (Similar to putative alpha-6-fucosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU00_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 4.400e-15 Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 409 MRNGKYVGMHIRRTDKANEIKLTKTEVYFRKVAQYLRSSPGGLRAADITGLWLSTDEVSVFNEVGGLRA 615
MR+GKYVG+HIRRTDKANE++ KT+ Y K YL S + A +ITG+W+S+D+ +VF+EV L +
Sbjct: 1 MRSGKYVGLHIRRTDKANEVQPVKTKAYLAKAVNYLASPTNDMAATNITGIWVSSDDEAVFDEVKQLAS 69
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 615 |
| Model size | 636 |
| Exons | 4 |
| Ec32 ortholog | Ec-12_003660.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01003 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| CAZy | GT23 |
| COG Functional cat. | M |
| EC | 2.4.1.68 |
| EggNOG OGs | KOG3705@1,KOG3705@2759 |
| EggNOG free text desc. | glycoprotein 6-alpha-L-fucosyltransferase activity |
| KEGG Module | M00075 |
| KEGG Pathway | ko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202 |
| KEGG Reaction | R05988,R09319 |
| KEGG ko | ko:K00717 |
| Seed eggNOG ortholog | 2880.D7G435 |
| Seed ortholog evalue | 9.8e-16 |
| Seed ortholog score | 90.5 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927762.8623269-UTR-E-siliculosus-1a_F_contig1240:13695..13716 | 1622927762.8623269-UTR-E-siliculosus-1a_F_contig1240:13695..13716 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1240 13696..13716 + |
| 1696318670.2332644-UTR-E-siliculosus-1a_F_contig1240:13695..13716 | 1696318670.2332644-UTR-E-siliculosus-1a_F_contig1240:13695..13716 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1240 13696..13716 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1240.1507.1 >prot_E-siliculosus-1a_F_contig1240.1507.1 ID=prot_E-siliculosus-1a_F_contig1240.1507.1|Name=mRNA_E-siliculosus-1a_F_contig1240.1507.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=205bp
MAVFSNEWMEEFGVGALGCAGSAIDAYEWRNAGYGSNINFLTIVWANAMM
AGRQDLAVVVRTDEWFPRTICNVTSNGEETRGWPCFFAEVPHLCAFDADQ
MLVDHLHSYLQPWFKADIQHILDEPDIAEMRNGKYVGMHIRRTDKANEIK
LTKTEVYFRKVAQYLRSSPGGLRAADITGLWLSTDEVSVFNEVGGLRAPS
PAYI* back to topmRNA from alignment at E-siliculosus-1a_F_contig1240:13696..16342+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1240.1507.1 ID=mRNA_E-siliculosus-1a_F_contig1240.1507.1|Name=mRNA_E-siliculosus-1a_F_contig1240.1507.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2647bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1240:13696..16342+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAGTTGATTCGAGAAAAGACATGGCGGTTTTCTCCAATGAATGGATGGA
GGAATTCGGAGTTGGCGCCCTTGGCTGTGCTGGTTCCGCGATAGACGCGT
ACGAGTGGAGGAATGCTGGCTACGGCAGCAACATCAACTGTAAGTCACAG
ATTATTGGTCTCTAAGCGTTGGCTAAGTACAAATGTGAATGCATCAAAAG
AGTCCCTGACAAACGTGGCGACAAACCTGTAGAGATGCACCATCGCTCCC
AGCAATCGCTTGTCGATGTCTACAACTTGAGAGAACTATCCGTGGCGGCG
GTTCCCGTATTCCGGGTCGTGGTGACGAGCTTCAAAGGAGACAGGATGGC
CAACTGCATTTGCTCATCAGCACAAAGAAGGTTGGGGTTTTGTTCATACC
GCTCGTTGCTCGATATCGCACGACTTCCTAACCTAACTGAGAGTGCTCCC
TCCACTCCGGAATTCATCCCGCCATCCCCTGCAGTCCTTACCATCGTGTG
GGCAAACGCAATGATGGCGGGACGCCAGGACCTCGCCGTCGTTGTCCGGA
CAGATGAATGGTTCCCGCGGACGATATGCAATGTCACCAGCAATGGAGAA
GAAACACGAGGTTGGCCTTGCTTCTTTGCTGAGGTTCCTCACCTGTGCGC
CTTCGACGCTGATCAGGTCTGAAGCAGTTCGCTGTGCTTGCACAGTGCCA
TTCGGTAAGGAAAGCAGCTGCGTCAACGTTTGACTTGCGACATTGTACAA
CAACCTCGTGTTCCGGCGCGGTGCTTCAGTCAAATTTGAATCGCCAAAGA
GTTTGCAGCGCAGATGTGGTAATAATAGTTCATGCACTAGGTCCACTTGG
GGTGGACTTGCTTATGCCAAACGAAAGGCTCATGGTTGCACAAAACTCAC
GATATGGCCGGTGAGGTTGTGGCCTTCGTTATGCGGTCAAAGAGTGCTAC
AATAATATATTGCAAACCCCTCCCAGTTATCTGGTGCCAAATACGAAATG
TTCTCAGACGATTCGAGAGTGATATTGTGAATCGCCAAGCTGTACCCGTA
GCCTTCAGACCCACCGACCGGAAATGACGAGCCCATGCACGCCTCACAGT
ACAACAGCTTGAGGGAAGACAACGAAGTGATATATGCCGATCACGCGGCC
GGCGGACACCATCGGTATTTTGCCTCGGCATCCAAGCGTGAAGCAAGTGC
CTACTTGATTTCTGTTGTTGTTCTTGATGCTGCTGGTGCTGCTGGTGCTG
CTCGTGTTCGTGAAGTAATCTTCATTCCAGACACCGTTTAAACCGCAACC
AATTTCTTCCTTCTATCTTCACGCAAACTACGCATTCCCGTGGCCACAAA
CCAAACCAGTAGTGTGCGGTCACAAGTGAGGCCAGCAGTGCAGGGCTTTG
TCCCCGACCAGGCCAACCGCACTTCATGGCCTGAACGTGTGGCAAGGATT
CTTCACATCAATCCGCCGACGCAAGCAGCGCAATAGTATGCTCTAAAGGC
TGTATTCAAATTTTCGTGTTCTCGGCGGAATTTAAAGGCACCTCTACGAC
GGGAGGGGGAGCGTTGTAGGGCACGAGAGCAACGAAGATACCTTCGTAAC
CTAACCTTGTTCCGGTGTGTGGCTTCCTTTGCCCAATCTGAAGTGACGAC
GCAAGCGTGCACATATCGACGTGAGGTTCGTAGACGCTCGATGTTCGTCC
GTCGTTTCGTGCGATTTGCTTGCTCAGGATTGGATCCAATACAACCGGCT
GCAGAACGTATCAGCGAGCGACTTAAGAGATGCCAGTAGCAGAAAGGGGC
TAAAATACGTTCGCAGACACCTTTCATCTACAAGGGCATCATTTCAATCT
ATGAGGATCGACCCGATGAATGTCCTAGCGGTGAGTTTTGTAGCGGTAGC
GCGAACAGCCTTTCGTGGCTATTTGCTGCAGACAGTGTGGCGCCGTTTGT
GCATCGACACACGTTGTGGAAACAAAAATCACCCGGGATTAAGATATTGG
TGATGCGCCCGCTTTTTCTTTCCGCATACTCCATACCACTTTTTGATTGG
GCGTTAGGCCCATGGTCGTTTTGATAGGATGTTGGGCCCATGGCCTGGAC
TGCCGCACCCGAAACAACCACAACTGCACCCCACGTTTTCCTTTCGCCAG
ATGCTGGTAGACCACCTGCACTCTTATCTTCAGCCATGGTTCAAGGCTGA
TATTCAACACATCCTAGATGAACCCGACATCGCCGAGATGAGGAACGGAA
AGTACGTCGGTATGCACATCCGCCGAACCGACAAGGCGAACGAAATCAAG
CTCACGAAAACCGAGGTATGCAGCGCACCCCACGGAACTTCGCGTGAGGA
TGGACGCACCTGATGGCTTCGCTTATTGACATTGTTGTGCCCCTTGCCTG
GTACGCTCCCGATTCCTCCCGATGAAGAAAATGCCAAAAACGCCACGCTG
CAAGCCAATGATGGTGAACGTTTGAATCATATTGTTCGTCCCGACAGGTG
TACTTTCGGAAGGTCGCCCAGTACTTGAGGTCGTCGCCAGGAGGACTTAG
AGCTGCCGATATAACGGGCCTTTGGCTGTCCACAGACGAAGTGTCTGTTT
TTAACGAGGTGGGAGGACTGAGAGCGCCGAGTCCGGCATATATATAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1240:13696..16342+ >mRNA_E-siliculosus-1a_F_contig1240.1507.1 ID=mRNA_E-siliculosus-1a_F_contig1240.1507.1|Name=mRNA_E-siliculosus-1a_F_contig1240.1507.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1230bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1240:13696..16342+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGTTTTCTCCAATGAATGGATGGAGGAATTCGGAGTTGGCGCCCT
TGGCTGTGCTGGTTCCGCGATAGACGCGTACGAGTGGAGGAATGCTGGCT
ACGGCAGCAACATCAACTATGGCGGTTTTCTCCAATGAATGGATGGAGGA
ATTCGGAGTTGGCGCCCTTGGCTGTGCTGGTTCCGCGATAGACGCGTACG
AGTGGAGGAATGCTGGCTACGGCAGCAACATCAACTTCCTTACCATCGTG
TGGGCAAACGCAATGATGGCGGGACGCCAGGACCTCGCCGTCGTTGTCCG
GACAGATGAATGGTTCCCGCGGACGATATGCAATGTCACCAGCAATGGAG
AAGAAACACGAGGTTGGCCTTGCTTCTTTGCTGAGGTTCCTCACCTGTGC
GCCTTCGACGCTGATCAGTCCTTACCATCGTGTGGGCAAACGCAATGATG
GCGGGACGCCAGGACCTCGCCGTCGTTGTCCGGACAGATGAATGGTTCCC
GCGGACGATATGCAATGTCACCAGCAATGGAGAAGAAACACGAGGTTGGC
CTTGCTTCTTTGCTGAGGTTCCTCACCTGTGCGCCTTCGACGCTGATCAG
ATGCTGGTAGACCACCTGCACTCTTATCTTCAGCCATGGTTCAAGGCTGA
TATTCAACACATCCTAGATGAACCCGACATCGCCGAGATGAGGAACGGAA
AGTACGTCGGTATGCACATCCGCCGAACCGACAAGGCGAACGAAATCAAG
CTCACGAAAACCGAGATGCTGGTAGACCACCTGCACTCTTATCTTCAGCC
ATGGTTCAAGGCTGATATTCAACACATCCTAGATGAACCCGACATCGCCG
AGATGAGGAACGGAAAGTACGTCGGTATGCACATCCGCCGAACCGACAAG
GCGAACGAAATCAAGCTCACGAAAACCGAGGTGTACTTTCGGAAGGTCGC
CCAGTACTTGAGGTCGTCGCCAGGAGGACTTAGAGCTGCCGATATAACGG
GCCTTTGGCTGTCCACAGACGAAGTGTCTGTTTTTAACGAGGTGGGAGGA
CTGAGAGCGCCGAGTCCGGCATATATATAGGTGTACTTTCGGAAGGTCGC
CCAGTACTTGAGGTCGTCGCCAGGAGGACTTAGAGCTGCCGATATAACGG
GCCTTTGGCTGTCCACAGACGAAGTGTCTGTTTTTAACGAGGTGGGAGGA
CTGAGAGCGCCGAGTCCGGCATATATATAG back to top
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