mRNA_E-siliculosus-1a_F_contig1239.1491.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1239.1491.1 vs. uniprot
Match: D7FJI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI0_ECTSI) HSP 1 Score: 461 bits (1187), Expect = 8.250e-155 Identity = 244/252 (96.83%), Postives = 246/252 (97.62%), Query Frame = 2
Query: 1769 MRHLPRTSAMRRGKDGASTSFGSEGGPFAEAPLQEQGEGSLSPKTSLTSLSSCHDLFSSLEEGRLQDATAGALARARKVAKQTWADIGHGGIGNDAGTDESSSFYACPSERFTTTNSERYAPLIKMKKIEKGQRSAGFCRQRLGDSATEASRRMQKSEDRSIKLKEHMERISLSVKTEEVAARLKEERRVRGKARTRLRYSRWVNSMDNWLGDEVPKLADYDKRQFPVQNTRQAQSRGQQMHEALGGPMAIL 2524
MRHLPRTSAMRRGKDGASTSFGSEGGPFAEAPLQEQGEGSLSPKTSL SLSSCHDLFSSLEEGRLQDATAGALARARKVAKQTWADIGHGGIGNDAGTDESSSFYACPSERFTTTNSERYAPLIKMKKIEKGQRSAGFCRQRLGDSATEASRRMQKSEDRSIKLKEHMERISLSVKTEEVAARLKEERRVRGKARTRLRYSRWVNSMDNWLGDEVPKLADYDKRQFPVQ++R GQQMHEALGGPMAIL
Sbjct: 1 MRHLPRTSAMRRGKDGASTSFGSEGGPFAEAPLQEQGEGSLSPKTSLASLSSCHDLFSSLEEGRLQDATAGALARARKVAKQTWADIGHGGIGNDAGTDESSSFYACPSERFTTTNSERYAPLIKMKKIEKGQRSAGFCRQRLGDSATEASRRMQKSEDRSIKLKEHMERISLSVKTEEVAARLKEERRVRGKARTRLRYSRWVNSMDNWLGDEVPKLADYDKRQFPVQSSRIR--GGQQMHEALGGPMAIL 250
BLAST of mRNA_E-siliculosus-1a_F_contig1239.1491.1 vs. uniprot
Match: D7FJI1_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI1_ECTSI) HSP 1 Score: 405 bits (1041), Expect = 1.700e-132 Identity = 241/332 (72.59%), Postives = 251/332 (75.60%), Query Frame = 2
Query: 554 MAAAVDETQMESSGVSDSYMTSTQMAYTSGLLAPPSKVPVMDPYRHRQLLHDRWVQRASQRLGDIATLKYGSVKDFFRMYDSNCDGVLDFDEFSEGITMCQLDHVFPRSLQRTLFDKIDTDKSGGIELDEFADFLGQSETKGPSSGEPSALQKEKTQQQADDVEARSVTLQPIQDHKVQRIKNKLAHCVQQAVPNASTGLADNRTMFLKKQFAFLSEDAASRGISLENLVQALGPRGMNLGVNDEDLRLLVKEMDTNRDGNITVKEFAAFLNLDDHDPLYQPLFDGRRRNVNILQASNAAMVEQAPPVESPEEEFFKARADHLHSVAVPSKE 1549
MAAAVDETQMESSGVSDSY+TSTQMAYTS D + + R S L +T + + FF C + T+C + KSGGIELDEFADFLGQSETKG SSG+PSALQKEKTQQQADDVEARSVTLQPIQDHK QRIKNKLAHCVQQAVPNASTGLADNRTMFLKKQFAFLSEDAASRGISLENLVQALGPRGMNLGVNDEDLRLLVKEMDTN DGNITVKEFAAFLNLDDHDPLYQPLFDGRRRNVNILQA MVEQAPPVESPEEEFFKARADHLHSVAVPSKE
Sbjct: 1 MAAAVDETQMESSGVSDSYITSTQMAYTS------------DGFNVQA--------RDSVTLPPSST---AASRSFF-----GCT--------TPTATVCST--------------STSSAKSGGIELDEFADFLGQSETKGASSGDPSALQKEKTQQQADDVEARSVTLQPIQDHKAQRIKNKLAHCVQQAVPNASTGLADNRTMFLKKQFAFLSEDAASRGISLENLVQALGPRGMNLGVNDEDLRLLVKEMDTNCDGNITVKEFAAFLNLDDHDPLYQPLFDGRRRNVNILQA----MVEQAPPVESPEEEFFKARADHLHSVAVPSKE 278
BLAST of mRNA_E-siliculosus-1a_F_contig1239.1491.1 vs. uniprot
Match: A0A7R9YBQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBQ5_9STRA) HSP 1 Score: 126 bits (317), Expect = 3.420e-27 Identity = 73/234 (31.20%), Postives = 126/234 (53.85%), Query Frame = 2
Query: 716 VQRASQRLGDIATLKYGSVKDFFRMYDSNCDGVLDFDEFSEGITMCQLDHVFPRSLQRTLFDKIDTDKSGGIELDEFADFLGQSETKGPSSGEPSALQKEKTQQQADDVEARSVTLQPIQDHKVQRIKNKLAHCVQQAVPNASTGLADNRTMFLKKQFAFLSEDAASRGISLENLVQALGPRGMNLGVNDEDLRLLVKEMDTNRDGNITVKEFAAFLNLDDHDPLYQPLFDGRR 1417
+ RA RL + LKYGSV+DFF +D N +G + +EFS L+ + PR QR +F+++D D+SG ++L+EF L T+ + +P +E+ +++ + + + ++D +Q++ +L + + + +T +L F + +D +S + ALGP G+N+ ++DLR++ + MD N D I+ EF FLN+DD DP Y P +DGRR
Sbjct: 164 LDRAIGRLQQLLVLKYGSVRDFFHTFDENHNGKITLEEFSRTFKRRNLERLIPRREQRLIFERLDADQSGSLDLEEFKSAL----TRETAFSQPLDRMREEAREKGVKLRRTNPRAELVRDALLQKVTQRLRM-------SKESDSVERKTAYLLNIFKQIDKDMTGL-LSADEFAAALGPGGLNVCAKEDDLRMVFEAMDVNEDERISYSEFIDFLNVDDIDPEYNPFYDGRR 385
BLAST of mRNA_E-siliculosus-1a_F_contig1239.1491.1 vs. uniprot
Match: A0A7S3ZVU3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVU3_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 8.170e-18 Identity = 78/254 (30.71%), Postives = 122/254 (48.03%), Query Frame = 2
Query: 704 HDRWVQRASQRLGDIATLKYGSVKDFFRMYDSNCDGVLDFDEFSEGITMCQLDHVFPRSLQRTLFDKIDTDKSGGIELDEFADFLGQSETKGPSSGEPSALQKEKTQQQADDVEARSVTLQPIQDHKVQRIKNKLAHCVQQAVPNASTGLADNRT-MFLKKQFAFLSEDAASRG---ISLENLVQALGPRGMNLGVNDEDLRLLVKEMDTNRDGNITVKEFAAFLNLDDHDPLYQPLFDGRRRNVNILQASNAA 1453
++R +A +RL +A KYG V+ F D N D L DEFS + L+ +FPR QR ++D ID D S +E++E D+L K P + + EK + +D +TL P ++ +K+++A V + T + R +L S+G +S +V ALGP+ +NLGV D ++R LV +D +K+F L + DH P + P FD R R + L+ + AA
Sbjct: 170 NERVTNKARERLAQLALHKYGGVRQMFDCLDRNNDKELSLDEFSHALKRRNLEKLFPRDQQRLVYDAIDKDFSESVEVEEMVDWL----EKDPRAA-AARRANEKLLRSQEDRNIGEITLPP----HLREVKDRIADEVYKRTRATKTEEGNLRQDEYLINGLQNWDVQNRSKGDGTLSPREIVDALGPKYLNLGVPDAEVRELVDYLDLGE--QCKIKQFVKKLEIGDHAPDFNPFFDARDRELVSLKRTIAA 412 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1239.1491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1239.1491.1 >prot_E-siliculosus-1a_F_contig1239.1491.1 ID=prot_E-siliculosus-1a_F_contig1239.1491.1|Name=mRNA_E-siliculosus-1a_F_contig1239.1491.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=830bp MFTSTRLKTALHRAGSRELEVWMEKVERELPCESTEREKGDCSITPTIREback to top mRNA from alignment at E-siliculosus-1a_F_contig1239:565..11291- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1239.1491.1 ID=mRNA_E-siliculosus-1a_F_contig1239.1491.1|Name=mRNA_E-siliculosus-1a_F_contig1239.1491.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=10727bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1239:565..11291- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1239:565..11291- >mRNA_E-siliculosus-1a_F_contig1239.1491.1 ID=mRNA_E-siliculosus-1a_F_contig1239.1491.1|Name=mRNA_E-siliculosus-1a_F_contig1239.1491.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4980bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1239:565..11291- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |