mRNA_E-siliculosus-1a_F_contig1225.1416.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1416.1 vs. uniprot
Match: D7G501_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G501_ECTSI) HSP 1 Score: 2270 bits (5883), Expect = 0.000e+0 Identity = 1306/1553 (84.10%), Postives = 1324/1553 (85.25%), Query Frame = 1
Query: 310 RQSVDSS-AEVEQAAVQLVSSLPEEALCKVLANREATTTLLGYAAEHPNAALRAFSISRLASACIRCWSFLDRRAFVNGGFEEGGDAQRYKQRVRDWIHDFFSSLPKLCDDPSNIVAAAAFSAIEALLREHPLCETAVDKEVRGFWGLESDVQEEGRGGTKEGRGSRGTPGG--GGHKQAFPLQHIGEIVLRSALPRIRRLLHRQSRMVVDGEPQTAAPAMRACASVMVAALRLSTSPSGKPIENSLLQNPTSVDFLGVKKSALGSGSSGNDAGAEGSTGKREEEDLDATLPPKDLAEEWLRARLGGILEGGRGGDALLVETAAWATLRVLQTVAMGPLRASVAPRVAEAFLRVLVAGKAATPKHLWPSLQAGHQEVAAGSALALRLASPSATAALAPHVLAAAERVPQPRQRLALLADVFFLLLVRPGRNGRAPCVVGGSASGSGGGDERNDDRQGGEGVTGSSRTGAPREGAKMLASVLDEEWFGQLVSDSPGSSARRLLFREEAVAVLVTTCAQVLAAGVVAALSPAAEKAAAVGIGNLARSCDSRYRATAARSDTNEGHKNGASVGNGTTNFAASVSAXXXXXXXXXXKKGRWSDLETWLDCSLTALEAFTRCVNWNSKTGYVGGLAYVRLLSLVLRLLCPLTAAPADGGDDRDPASAAGRIFLGGRFYGGGGEGGVDVGVALDDASTGGGGRGRLAWARQRLAHVVDDLMWRLREGLPGRDIRLRLLQATCTHVGLSAVVSGYVGVTEDSANELVSVLQGELGELDAQAGFSTQPRPAVTGAATSGGDEPGDGDDGNRGGDAHAGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--QWESISSISARTGSLTDVMAHELVIGCLVRLALVTEGETAHEVMSVLEHERGRARARERLGRGAVGPMEEVVAKGIRALQLLVFPATRPKVADGSPEAVLLKRLVRTMDLGWHAVVQPDERALTGSSAELFDHGAHAFPNLHRRLGRLLCGGIGVDTANTDERPSTGSGDFPGDLGAGAAAVITPFEAHAWEEEAPQAQLNGGSDPVVVTGSHVVYHGDSGTGGGACGATGGGGRALGPTTPATLAFAGVGGDAASPATIPGLVGKVASRGVALRIRVFNATNTRLHGFSIRLSFGQGGEAAGMGGGGRVESAVQEVLMPSAAHTLEVPVTPLDVLTDVIVHVSVVFPDTEPESEFESEGTAELLGVESTEKGRGGDSGGGGSNALSGFGQNQQSFDGGAGDTGVDGGGSGSVTVILQAGSYRVPAEAFLGPPERAAATWVGFQNVWCGLPYVTAIPVESVRHLPRARTAAAGHEHAAMYLRTSSGVRLAMMPASSRGGGGRGCDDARATAAVECPVGNTDYAVSSAWVFQAWDGTPVLCALTAMKAPFSLGKGRGGG-------GGQPSWYGRLEVRCGSRACLEFAQCSPKRLSAFVTNGVFAPPAAGDQQQPGPFGGAFLPTAPAATAVSGGGELNGPHPDWFSRTDTVGVPPPPCPPEQRAGVVASDGAKFKPLARVLRDQQRVDTTQPATAQPVRA 4932
+QSVDSS AEVEQAAVQLVSSLPEE LCKVLANRE RVRDWIHDFFSSLPKLCDDPSNIVAAAAFSAIEALLREHPLCETAVDKEVRGFWGLESDVQ EG+GG KEGRGSRGTPGG GGHKQAFPLQH+GEIVLRSALPRIRRLLHRQSRMVVDGEPQTAAPAMRACASVMVAALRLSTSPSGKPIEN LLQNPTSVDFLGVKKSALGSG SGNDAGAEGSTGK EE+DLDATLPPKDLAEEWLRARLGGILEGGRGGDALLVETAAWATLRVL TVAMGPLR S APRVAEAFLRVLVAGKAATPKHLWPSL AGHQEVAAG+ALALRLASPSATAALAPHVLAAAERVPQPRQRLALLADVFFLLLVRPGRNGRAPCV GGS SG G ERNDDRQGGEG TGSSRTGAPREG KMLASVLDEEWF QLVSDSPG SARRLLFREEAVAVLVTTCAQVLAAGVVAALSPAAEKAAAVGIGNLARSCDSR RATAARSDT+EGHKNG+SVGNG NFAA XXXXXXXXX KKGRWSDLETWLDCSLTALEAFTRCVNWNSKTGYVGGLAYVRLLSLVLRLLCPLTAAPAD GDDRD AS A R+ LGGR YGG G+GGVDVGVALDD ST GGGRGRLAWARQRLAHVVDDLMWRLREGLPGRDIRLRLLQATCTHVGLSAVVSG VGVTEDSANELVSVLQGELGELDAQAGFSTQPRPA AATSGGDEPGDGDDG+RG DAHAGRG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QWESISSIS RTGSLTDVMAHELVIGCLVRLALVTEGETAHEVMSVLEHERGRARARERLGRGAVGPMEE+VAKGIRALQLLVFP+T PKVADGSPEAVLLKRLVRTMDLGWHAVVQPDERALTGSSAELFDH HAFPNLHRRL RLLCGGIGVDTA+TDERPSTGSGDFPGDL AGAAAVITPFEAHAWEEEAPQAQLNGGSDPVVVT SH+VYHGDSGTGGGACGATGGGGRALGPTT A LAFAGV GDAASP TIPGLVGKVASR V LRIRVFNATNTRLHGFSIRLSFGQGGEA GMGGGGRVESAVQEVLMPSAAHTLEVPVTPLDVLTDVIVHVSVVFPDTEPESEFESEGTAELLGVESTEKGRGGDSGGGGSNALSGFGQNQ SFDGGAGDTGVDGGGSGSVTVILQAGSYRVPAEAFLGPPERAAATWVGFQNVWCGL YVTAIPVES RHLPRA TAAAGHEHAAM LRT+SGVRLAMMP SSRGGGGRGCDDAR+ AAVECPVGNTDYAVSSAWVFQAWDGTPVLCALT MKAPFSL + GGG G QPSWYGRLE RAGV A+D A FKPLARVLRDQQRVDTTQPATAQP RA
Sbjct: 24 KQSVDSSSAEVEQAAVQLVSSLPEETLCKVLANRE---------------------------------------------------------RVRDWIHDFFSSLPKLCDDPSNIVAAAAFSAIEALLREHPLCETAVDKEVRGFWGLESDVQPEGKGGVKEGRGSRGTPGGMFGGHKQAFPLQHVGEIVLRSALPRIRRLLHRQSRMVVDGEPQTAAPAMRACASVMVAALRLSTSPSGKPIENPLLQNPTSVDFLGVKKSALGSGPSGNDAGAEGSTGKEEEKDLDATLPPKDLAEEWLRARLGGILEGGRGGDALLVETAAWATLRVLHTVAMGPLRVSFAPRVAEAFLRVLVAGKAATPKHLWPSLHAGHQEVAAGAALALRLASPSATAALAPHVLAAAERVPQPRQRLALLADVFFLLLVRPGRNGRAPCVGGGSGSGGG---ERNDDRQGGEGGTGSSRTGAPREGPKMLASVLDEEWFEQLVSDSPGRSARRLLFREEAVAVLVTTCAQVLAAGVVAALSPAAEKAAAVGIGNLARSCDSRCRATAARSDTSEGHKNGSSVGNGNANFAAXXXXXXXXXXXXXAKKGRWSDLETWLDCSLTALEAFTRCVNWNSKTGYVGGLAYVRLLSLVLRLLCPLTAAPADSGDDRDSASTADRVLLGGRSYGGDGKGGVDVGVALDDDSTAGGGRGRLAWARQRLAHVVDDLMWRLREGLPGRDIRLRLLQATCTHVGLSAVVSGDVGVTEDSANELVSVLQGELGELDAQAGFSTQPRPAR--AATSGGDEPGDGDDGHRGTDAHAGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQWESISSISGRTGSLTDVMAHELVIGCLVRLALVTEGETAHEVMSVLEHERGRARARERLGRGAVGPMEEIVAKGIRALQLLVFPSTSPKVADGSPEAVLLKRLVRTMDLGWHAVVQPDERALTGSSAELFDHEVHAFPNLHRRLRRLLCGGIGVDTASTDERPSTGSGDFPGDLEAGAAAVITPFEAHAWEEEAPQAQLNGGSDPVVVTASHIVYHGDSGTGGGACGATGGGGRALGPTTLAALAFAGVDGDAASPGTIPGLVGKVASRAVTLRIRVFNATNTRLHGFSIRLSFGQGGEAVGMGGGGRVESAVQEVLMPSAAHTLEVPVTPLDVLTDVIVHVSVVFPDTEPESEFESEGTAELLGVESTEKGRGGDSGGGGSNALSGFGQNQPSFDGGAGDTGVDGGGSGSVTVILQAGSYRVPAEAFLGPPERAAATWVGFQNVWCGLAYVTAIPVESARHLPRAITAAAGHEHAAMSLRTASGVRLAMMPVSSRGGGGRGCDDARSAAAVECPVGNTDYAVSSAWVFQAWDGTPVLCALTVMKAPFSLLQASGGGXXXXXXXGEQPSWYGRLE---------------------------------------------------------------------------------------RAGVFATDAANFKPLARVLRDQQRVDTTQPATAQPERA 1427
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1416.1 vs. uniprot
Match: A0A836CDV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDV2_9STRA) HSP 1 Score: 209 bits (533), Expect = 1.270e-50 Identity = 435/1701 (25.57%), Postives = 612/1701 (35.98%), Query Frame = 1
Query: 1 MELDGVGR----GPGGKRIAYLADKLSAGGAASEADIRTVVDEFYEPSADGGDSQTQVTYECLSLLCGGAGGGECXXXXXXXGRFAENEAFVDKLSFRLERDRAQQRRQSV-------DSSAEVEQAAVQLVS---------------------------SLPEEALCKVLANREATTTLLGYAAEHPNAALRAFSISRLASACIRCWSFLDRRA--------FVNGG-FEEGGDAQRYKQRVRDWIHDFFSSLPKLCDDPSNIVAAAAFSAIEALLREHPLCETAVDKEVRGFW-GLESDVQEEGRGGTKEGRGSRGTPGGGGHKQAFPLQHIGEIVLRSALPRIRRLLHRQSRMVVDGEPQTAAPAMRACASVMVAALRLSTSPSGKPIENSLLQNPTSVDFLGVKKSALGSGSSGNDAGAEGSTGKREEEDLDATLPPKDLA-EEWLRARLGGILEGGRGGDALLVETAAWATLRVLQTVAMGPLRASVAPRVAEAFLRVLVAGKAATPKHLWPS----LQAGHQEVAAGSALALRLASPSATAALAPHVLAAAERVPQPRQRLALLADVFFLLLVRPGRNGRAPCVVGGSASGSGGGDERNDDRQGGEGVTGSSRTGAPREGAKMLASVLDEEWF-GQLVSDSPGSSARRLL----------FREEAVAVLVTTCAQVLAAGVVAALSPAAEKAAAVGIGNLARSCDSRYRATAARSDTNEGHK-NGASVGN---------GTTNFAASVSAXXXXXXXXXXKKGRWSDLETWLDCSLTALEAFTRCVNWN--SKTGYVGGLAYVRLLSLVLRLLCPLTAAPADGGDDRDPASAAGRIFLGGRFYGGGGEGGVDVGVALDDASTGGGGRGRLAWARQRLAHV--VDDLMWRLREGLPGRDIRLRLLQATCTHVGLSAVVSGYV-------------GVTEDSANELVSVLQGELGELDAQAGFSTQPRPAVTGAATSGGDEPGDGDDGNRGGDAHAGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQWESISSISARTGSLTDVMAHELVIGCLVRLALVTEGETAHEVMSVLEHERGRARARERLGRGAVGPMEEVVAKGIRALQLLVFPATRPKVADGSPEAVLLKRLVRTMD-LGWHAVVQPDERALTGSSAELFDH------GAHAFPNLHRRLGRLLCGGIGVD----TANTDERPSTGSGDF--PGDLGAGAAAVITPFEA-----------HAWEEEAPQAQLNGGSDPVVVTGSHVVYHGDSGTGGGACGATGGGGRALGPTTPATLAFAGVGGDAASPATIPGLVGKVASRGVALRIRVFNATNTRL-HGFSIRLSFGQGGEAAGMGGGGRVESAVQEVLMPSAAHTLEVPVTPLDVLTDVIVHVSVVFPDTEPESEFESEGTAELLGVESTEKGRGGDSGGGGSNALSGFGQNQQSFDG------GAGDTGVDGGGSGSVTVILQAGSYRVPAEA-----FLGPPERAA--ATWVGFQNVWCGLPYVTAIPVESVRHLPRARTAAAGHEHAAMYLRTSSGVRLAMMPASSRGGGGRGCDDARATAAVECPVGNTDYAVSSAWVFQAWDGTPVLCALTAMKAPFSLGKGRGGGGGQP------------------------SWYGRLEVRCGSRACLEFAQCSPKRLSAFVTNGVFA 4644
M+ G GR G + L DKL+AG S+ ++ V+DEF P G Q ++ Y + L G + + ++ RL D + +R V + + A+ LV+ +LP EAL K + LL AA HPN+ LRA +++ + A RC ++ F NGG +E GG+ QR +Q + DW+ + ++ LC+D + VAAAAF+A+ LR +PLC TA+D ++ G E + + K AFPLQ +GE VLR+ALP + RLL R + A+R C + VAALR S G S L S LG G A AE A+ PP + + WLR G+L G DA VE A + TLRVL + P RA +AP VA L AG + R A P A L ++ A P+P QRL L+A+ FF ++V C+ GG R P +L ++L+ +W G L +D+P ++ FREE VA L TCA VL AG A + ATA +D + G NG+S+ + G + + A RW DLE W+ S L A CV W+ + + G Y RLL+L+LRL LG + + G RLA R AHV +D L W+L +G+PGR R+ LL A C ++ + +G G +D+A +LV+ + EL LDA PA + ++ XXXXXXXXXXXXXXXXXXXXXXX QW V A ++GCLVRLA + A + ER R R+ LG GP+ + + + AL+ V R +A G+ E + +G + P L+ A G A P R RL CGG G T E + S F P G GAA + P A AW P QLNGGS+P+ +T H + TP A G G +GV+LR+ +NATN + IRL FG G A + V +++ L+P A +T +VP+ + V ++ EP+ E E++ AEL G ++ + GAG V ++ +A A F G R A T + C P A+ + + AAA + L ++ A G G + D+A+++AW F+ W G+ + LTAMK P+ GG + +W GRLE RC C E RL+AFVTNG FA
Sbjct: 1 MDTSGKGRLGSNATGMGKFGGLFDKLAAGEFISDVTVQAVLDEFSNPDLSG--RQKRIVYTAMWFLLG----------RQLDEATMGTDTALQRMEARLRDDLRRAQRMHVIGNPWTATTPVDGNDVALDLVTVTRLXXXXXXXXXEALGDALAVLRLALALPGEALPKFILLAGVARMLLECAAFHPNSMLRAAAVAEVTDAAARCAAWCGXXXXXXXXXXXFFNGGAYESGGEVQRAQQVLWDWVLEVYARTVVLCEDEDDAVAAAAFAALGGPLRTYPLCATALDTDIAVLLNGAEPAARLD---------------ASASSKAAFPLQQLGEGVLRAALPALPRLLARSCTLGRGSR----CSALRTCCRLAVAALRAGYSACGSTFIGSRLLEKVSRGGLG-----------GRGAAAEAPA---------ASAPPLLASVDSWLRT---GVLPLLSGLDAEEVECAVFTTLRVLHAPPLRPQRALLAPAVAXXXXXXXXXXXXXXXXXXXXXXXXXLNAGQAALXXXXXXXXRWAPPQALPPLLAALVPAVALCPEPGQRLGLMAEAFFAVMV---------CMPGGG------------------------RANKPA----ILEAILESDWLHGVLNADAPTAAXXXXXXXXXXXXXVPFREELVAALTHTCAYVLTAGATAIAA-----------------------ATAPSADADSGDDVNGSSLPSPVQQQLPLSGVGRYPLAPHAPDAAAAAAE----RWCDLERWVTMSGAVLHATGLCVGWDGGAASASAGADGYTRLLTLILRLTSXXXXXXXXXXXXXXXXXXXXXXALGSPSP-----------IFSPNPRPQLSGDARLA--RAAAAHVPRLDQLGWKLAQGMPGRRARVALLGALCRYLADVSGAAGQAADEQAARGVRLRPGEEDDAALDLVARVSVELAALDA---------PATSNLKSA-------------------------------APXXXXXXXXXXXXXXXXXXXXXXXERAAQWR--------------VNAQHALLGCLVRLAAAYDSAAA-PALKAARAERDRVCLRDGLGGQGNGPLVDQARRAVAALEA-VTRRGRASLAGGAAELAAAAAARAALGFIGTPPGLPPPAGPLSADDAARKAALRAALLGELALPPAQERDARLGCGGGGTGFDYRTGAQQEVAARLSRHFRWPPRGGHGAAPLPPPCRALPGXXXXXRPHAAWS---PPTQLNGGSEPLHLTACHRL-------------------------TPRWRAHNSAG----------GXXXXXXGKGVSLRVCAYNATNGSITDALEIRLGFGAGAAPAAVPAAAVV---LRDRLLPGAVYTWDVPLALAPGWRALAVTATITMLHAEPDPELEADSAAELAGGDALLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXPLVVGAGMYVVHA----EALLLPRAXXXXXXXLAAFQSLFSGLAHRTALPVTSAPWATSLCTNPAELAMAMGAPMPGDGTDDAAA----------PETADDLELLDADH----GDGVRRTAWVPLPPALLSACDHAITAAWAFETWQGSAITAQLTAMKQPYGAADIAAIGGAESGALSPKALAAAVXXXXXXXXXAAHAWVGRLEFRCADVQCAETVAAHAARLAAFVTNGAFA 1455 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1225.1416.1 >prot_E-siliculosus-1a_F_contig1225.1416.1 ID=prot_E-siliculosus-1a_F_contig1225.1416.1|Name=mRNA_E-siliculosus-1a_F_contig1225.1416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1645bp MELDGVGRGPGGKRIAYLADKLSAGGAASEADIRTVVDEFYEPSADGGDSback to top mRNA from alignment at E-siliculosus-1a_F_contig1225:1121..14440+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1225.1416.1 ID=mRNA_E-siliculosus-1a_F_contig1225.1416.1|Name=mRNA_E-siliculosus-1a_F_contig1225.1416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=13320bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1225:1121..14440+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1225:1121..14440+ >mRNA_E-siliculosus-1a_F_contig1225.1416.1 ID=mRNA_E-siliculosus-1a_F_contig1225.1416.1|Name=mRNA_E-siliculosus-1a_F_contig1225.1416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=9870bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1225:1121..14440+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |