mRNA_E-siliculosus-1a_F_contig1223.1407.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1223.1407.1
Unique NamemRNA_E-siliculosus-1a_F_contig1223.1407.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1223.1407.1 vs. uniprot
Match: D7FUN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN5_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 9.570e-58
Identity = 85/94 (90.43%), Postives = 87/94 (92.55%), Query Frame = 1 
Query:    1 MHMVHRGKSILDISGFGDPASTENVPPIDNCDGRRSSRHPYLDNRHLPEEPSDEYAGCVSRYGNACEARYSATDMSPAVGPVANDRLSCWCLTT 282
            MHMVHRGKSILDISGFGDPASTENV  IDNCDGRRSSRHPYLDNR   EEPSDEYAGCVSRYG+ACEARYSATDMSPAVGPV N+RLSC CLTT
Sbjct:    1 MHMVHRGKSILDISGFGDPASTENVLTIDNCDGRRSSRHPYLDNRGNEEEPSDEYAGCVSRYGDACEARYSATDMSPAVGPVGNERLSCSCLTT 94
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1223.1407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUN5_ECTSI9.570e-5890.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1223contigE-siliculosus-1a_F_contig1223:18736..19227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size285
Model size285
Exons3
Ec32 orthologEc-26_002280.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1223.1407.1prot_E-siliculosus-1a_F_contig1223.1407.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1223 18736..19227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927742.2614033-CDS-E-siliculosus-1a_F_contig1223:18735..188731622927742.2614033-CDS-E-siliculosus-1a_F_contig1223:18735..18873Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1223 18736..18873 -
1696318663.053829-CDS-E-siliculosus-1a_F_contig1223:18735..188731696318663.053829-CDS-E-siliculosus-1a_F_contig1223:18735..18873Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1223 18736..18873 -
1622927742.2770848-CDS-E-siliculosus-1a_F_contig1223:18974..189871622927742.2770848-CDS-E-siliculosus-1a_F_contig1223:18974..18987Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1223 18975..18987 -
1696318663.0630183-CDS-E-siliculosus-1a_F_contig1223:18974..189871696318663.0630183-CDS-E-siliculosus-1a_F_contig1223:18974..18987Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1223 18975..18987 -
1622927742.2908404-CDS-E-siliculosus-1a_F_contig1223:19093..192271622927742.2908404-CDS-E-siliculosus-1a_F_contig1223:19093..19227Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1223 19094..19227 -
1696318663.0707748-CDS-E-siliculosus-1a_F_contig1223:19093..192271696318663.0707748-CDS-E-siliculosus-1a_F_contig1223:19093..19227Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1223 19094..19227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1223.1407.1

>prot_E-siliculosus-1a_F_contig1223.1407.1 ID=prot_E-siliculosus-1a_F_contig1223.1407.1|Name=mRNA_E-siliculosus-1a_F_contig1223.1407.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=95bp
MHMVHRGKSILDISGFGDPASTENVPPIDNCDGRRSSRHPYLDNRHLPEE
PSDEYAGCVSRYGNACEARYSATDMSPAVGPVANDRLSCWCLTT*
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mRNA from alignment at E-siliculosus-1a_F_contig1223:18736..19227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1223.1407.1 ID=mRNA_E-siliculosus-1a_F_contig1223.1407.1|Name=mRNA_E-siliculosus-1a_F_contig1223.1407.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=492bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1223:18736..19227- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCATATGGTGCACCGTGGTAAGTCTATTCTGGACATTTCCGGTTTCGG
GGATCCCGCCTCAACGGAAAACGTACCGCCGATCGACAATTGCGACGGCA
GAAGATCAAGTCGCCATCCCTATCTCGACAATCGGTAAGTTCCACAGCCC
GGCGGGTGGAAAGAGCGCGGTGCTCAAGGTTGACGAATCTTGCCGTCTCG
AAAAGTTGTCTGCAATGTGCACCACAATTCCAAGGGCCAGGCATCTCCCC
GAAGTTACCACTGCTGTCTTTTCAAATACGGGCACAGTCAATAGTGCATC
TTCTGTTGTCGCGCATTGCCTGTCCGTACTTGTCTTTGCTGTGGTAACGA
AGAGGAGCCTTCCGATGAGTACGCCGGATGTGTCTCGCGCTACGGCAATG
CCTGCGAAGCCCGCTACTCCGCGACGGATATGAGCCCAGCGGTAGGTCCG
GTCGCCAACGACCGACTCTCCTGCTGGTGCCTGACGACCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1223:18736..19227-

>mRNA_E-siliculosus-1a_F_contig1223.1407.1 ID=mRNA_E-siliculosus-1a_F_contig1223.1407.1|Name=mRNA_E-siliculosus-1a_F_contig1223.1407.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=570bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1223:18736..19227- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCATATGGTGCACCGTGGTAAGTCTATTCTGGACATTTCCGGTTTCGG
GGATCCCGCCTCAACGGAAAACGTACCGCCGATCGACAATTGCGACGGCA
GAAGATCAAGTCGCCATCCCTATCTCGACAATCGATGCATATGGTGCACC
GTGGTAAGTCTATTCTGGACATTTCCGGTTTCGGGGATCCCGCCTCAACG
GAAAACGTACCGCCGATCGACAATTGCGACGGCAGAAGATCAAGTCGCCA
TCCCTATCTCGACAATCGGCATCTCCCCGAAGCATCTCCCCGAAGAGCCT
TCCGATGAGTACGCCGGATGTGTCTCGCGCTACGGCAATGCCTGCGAAGC
CCGCTACTCCGCGACGGATATGAGCCCAGCGGTAGGTCCGGTCGCCAACG
ACCGACTCTCCTGCTGGTGCCTGACGACCTAAGAGCCTTCCGATGAGTAC
GCCGGATGTGTCTCGCGCTACGGCAATGCCTGCGAAGCCCGCTACTCCGC
GACGGATATGAGCCCAGCGGTAGGTCCGGTCGCCAACGACCGACTCTCCT
GCTGGTGCCTGACGACCTAA
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