mRNA_E-siliculosus-1a_F_contig12193.1385.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE) HSP 1 Score: 210 bits (535), Expect = 4.420e-63 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1
Query: 1 SGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEGG 306
SGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEGG
Sbjct: 136 SGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEGG 237
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A835YSR1_9STRA (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR1_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.580e-28 Identity = 56/100 (56.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query: 4 GHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEG 303
GHTAAVY FSP +LVAS GFDRT+RLWEG YP+SQVACL HRQL+SD DTETGQRV N+L LEG++QCV A G
Sbjct: 79 GHTAAVYAVAFSPCGNLVASGGFDRTVRLWEGGYPHSQVACLAEHRQLVSDXXXXXXXXXXXXXXXXXXXXXXDTETGQRVNNVLRLEGMLQCVSYADGG 178
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A1V9Z1V2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1V2_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 4.730e-17 Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 1
Query: 4 GHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQ--VACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCV 285
GH AVY KFSP L+AS D + LW+ ++Q +A L H QL+ D+ W+ D RSLLSAS+D TV WDT+ GQ + N + + GLVQ V
Sbjct: 117 GHGGAVYTTKFSPCGRLLASGSLDCRVLLWDITTKFNQQQLASLASHNQLVIDMSWSNDSRSLLSASYDHTVNLWDTDKGQLL-NSIGVNGLVQTV 211
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: T0QW05_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QW05_SAPDV) HSP 1 Score: 81.3 bits (199), Expect = 1.100e-15 Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 16 AVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQ--VACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCV 285
AVY KFSP L+AS D + LW+ ++Q +A L H QLI D+ W+ D RSLLSAS+D TV WDT+ GQ V N + + GLVQ V
Sbjct: 134 AVYTTKFSPCGRLLASGSLDCRVLLWDITTKFNQQQLASLTQHNQLIIDISWSNDSRSLLSASYDHTVNLWDTDKGQLV-NSVGVNGLVQTV 224
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A1A0HJF3_9ASCO (Uncharacterized protein n=1 Tax=Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993 TaxID=869754 RepID=A0A1A0HJF3_9ASCO) HSP 1 Score: 72.0 bits (175), Expect = 1.280e-12 Identity = 43/105 (40.95%), Postives = 57/105 (54.29%), Query Frame = 1
Query: 1 SGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVA----CLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEG 303
SGHT AV+ +FS +ASAG DRT+RLW A +EGH++ I+ L W + +LSAS D TV+ WD ETGQR+ E V ++EG
Sbjct: 25 SGHTGAVFSIEFSADGHNIASAGMDRTIRLWNLPTTADNEAPNYGVIEGHKKAITSLSWILSSK-ILSASADSTVSVWDAETGQRLKTGKGHELTVNDCSTSSEG 128
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A9V9T1_MONBE (Lactoylglutathione lyase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V9T1_MONBE) HSP 1 Score: 68.9 bits (167), Expect = 2.490e-11 Identity = 34/81 (41.98%), Postives = 44/81 (54.32%), Query Frame = 1
Query: 4 GHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRV 246
GH AVY FSP ++A+AGFDR + +W + L+GH + L WA L S S D+TVA WD TG+RV
Sbjct: 76 GHAEAVYAGTFSPSGHMLATAGFDRNVYVWNTFGNCENIMSLQGHTGAVLGLHWAKLENRLFSCSSDKTVAVWDGNTGERV 156
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A512UMM7_9ASCO (Uncharacterized protein n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512UMM7_9ASCO) HSP 1 Score: 68.2 bits (165), Expect = 3.210e-11 Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1
Query: 1 SGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVA----CLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRV 246
SGH+ AV+ KFSP +ASAG DRT+RLW ++ + +EGH+ ++ L W + +LS S D TV+ WD ETGQR+
Sbjct: 25 SGHSGAVFSVKFSPDGQHIASAGTDRTIRLWNLPTRANEESPNYGVIEGHKGGLTALSWLSQSK-ILSTSADSTVSIWDAETGQRL 109
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A7S1NRB8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NRB8_9EUGL) HSP 1 Score: 64.7 bits (156), Expect = 6.510e-11 Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 19 VYVAKFSPRDSLVASAGFDRTLRLWEGAY-PYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVG 249
+Y A FSP SL+A G+D + LW GA + L GH +S L +APDGR+LLSAS D TV W TG+ G
Sbjct: 2 IYGADFSPDGSLLALGGWDGRVSLWGGANGALCLLRTLTGHTGFVSALAFAPDGRTLLSASGDATVRVWCPATGESAG 79
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A4P6XGR8_9ASCO (Prp8 binding protein n=1 Tax=Metschnikowia aff. pulcherrima TaxID=2163413 RepID=A0A4P6XGR8_9ASCO) HSP 1 Score: 66.6 bits (161), Expect = 1.200e-10 Identity = 36/86 (41.86%), Postives = 46/86 (53.49%), Query Frame = 1
Query: 1 SGHTAAVYVAKFSPRDSLVASAGFDRTLRLW----EGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRV 246
SGH A KFSP +ASAG DRT+RLW + +EGH+ ++ L W + + + S D TVA WD ETGQRV
Sbjct: 34 SGHEGAALCVKFSPDGQNIASAGLDRTIRLWNLPTDAKDEVPNYGVIEGHKGAVTCLDWLAQSK-IFTGSADSTVAFWDAETGQRV 118
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A3M0ITQ3_HIRRU (Sodium/potassium-transporting ATPase subunit beta-1-interacting protein n=1 Tax=Hirundo rustica rustica TaxID=333673 RepID=A0A3M0ITQ3_HIRRU) HSP 1 Score: 65.9 bits (159), Expect = 3.090e-10 Identity = 39/106 (36.79%), Postives = 50/106 (47.17%), Query Frame = 1
Query: 1 SGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDG-----RSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEG 303
SGH VY KF P + +ASAGFDR + LW A L+GH + +L + DG + L QTVA WD+ETG+RV + V A G
Sbjct: 24 SGHEGEVYCCKFHPNGNTLASAGFDRLILLWNVYGDCDNFATLKGHSGAVMELHYNTDGSGCRLQHALLGIHGQTVAVWDSETGERVKRLKGHTSFVNSCYPARRG 129 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig12193.1385.1 >prot_E-siliculosus-1a_F_contig12193.1385.1 ID=prot_E-siliculosus-1a_F_contig12193.1385.1|Name=mRNA_E-siliculosus-1a_F_contig12193.1385.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=110bp SGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLIback to top mRNA from alignment at E-siliculosus-1a_F_contig12193:692..1541- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig12193.1385.1 ID=mRNA_E-siliculosus-1a_F_contig12193.1385.1|Name=mRNA_E-siliculosus-1a_F_contig12193.1385.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=850bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12193:692..1541- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12193:692..1541- >mRNA_E-siliculosus-1a_F_contig12193.1385.1 ID=mRNA_E-siliculosus-1a_F_contig12193.1385.1|Name=mRNA_E-siliculosus-1a_F_contig12193.1385.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12193:692..1541- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |