mRNA_E-siliculosus-1a_F_contig12193.1385.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12193.1385.1
Unique NamemRNA_E-siliculosus-1a_F_contig12193.1385.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 4.420e-63
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1
Query:    1 SGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEGG 306
            SGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEGG
Sbjct:  136 SGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEGG 237          
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A835YSR1_9STRA (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.580e-28
Identity = 56/100 (56.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:    4 GHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEG 303
            GHTAAVY   FSP  +LVAS GFDRT+RLWEG YP+SQVACL  HRQL+SD                      DTETGQRV N+L LEG++QCV  A  G
Sbjct:   79 GHTAAVYAVAFSPCGNLVASGGFDRTVRLWEGGYPHSQVACLAEHRQLVSDXXXXXXXXXXXXXXXXXXXXXXDTETGQRVNNVLRLEGMLQCVSYADGG 178          
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A1V9Z1V2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1V2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.730e-17
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    4 GHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQ--VACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCV 285
            GH  AVY  KFSP   L+AS   D  + LW+    ++Q  +A L  H QL+ D+ W+ D RSLLSAS+D TV  WDT+ GQ + N + + GLVQ V
Sbjct:  117 GHGGAVYTTKFSPCGRLLASGSLDCRVLLWDITTKFNQQQLASLASHNQLVIDMSWSNDSRSLLSASYDHTVNLWDTDKGQLL-NSIGVNGLVQTV 211          
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: T0QW05_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QW05_SAPDV)

HSP 1 Score: 81.3 bits (199), Expect = 1.100e-15
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   16 AVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQ--VACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCV 285
            AVY  KFSP   L+AS   D  + LW+    ++Q  +A L  H QLI D+ W+ D RSLLSAS+D TV  WDT+ GQ V N + + GLVQ V
Sbjct:  134 AVYTTKFSPCGRLLASGSLDCRVLLWDITTKFNQQQLASLTQHNQLIIDISWSNDSRSLLSASYDHTVNLWDTDKGQLV-NSVGVNGLVQTV 224          
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A1A0HJF3_9ASCO (Uncharacterized protein n=1 Tax=Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993 TaxID=869754 RepID=A0A1A0HJF3_9ASCO)

HSP 1 Score: 72.0 bits (175), Expect = 1.280e-12
Identity = 43/105 (40.95%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    1 SGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVA----CLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEG 303
            SGHT AV+  +FS     +ASAG DRT+RLW         A     +EGH++ I+ L W    + +LSAS D TV+ WD ETGQR+      E  V     ++EG
Sbjct:   25 SGHTGAVFSIEFSADGHNIASAGMDRTIRLWNLPTTADNEAPNYGVIEGHKKAITSLSWILSSK-ILSASADSTVSVWDAETGQRLKTGKGHELTVNDCSTSSEG 128          
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A9V9T1_MONBE (Lactoylglutathione lyase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V9T1_MONBE)

HSP 1 Score: 68.9 bits (167), Expect = 2.490e-11
Identity = 34/81 (41.98%), Postives = 44/81 (54.32%), Query Frame = 1
Query:    4 GHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRV 246
            GH  AVY   FSP   ++A+AGFDR + +W        +  L+GH   +  L WA     L S S D+TVA WD  TG+RV
Sbjct:   76 GHAEAVYAGTFSPSGHMLATAGFDRNVYVWNTFGNCENIMSLQGHTGAVLGLHWAKLENRLFSCSSDKTVAVWDGNTGERV 156          
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A512UMM7_9ASCO (Uncharacterized protein n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512UMM7_9ASCO)

HSP 1 Score: 68.2 bits (165), Expect = 3.210e-11
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 SGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVA----CLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRV 246
            SGH+ AV+  KFSP    +ASAG DRT+RLW      ++ +     +EGH+  ++ L W    + +LS S D TV+ WD ETGQR+
Sbjct:   25 SGHSGAVFSVKFSPDGQHIASAGTDRTIRLWNLPTRANEESPNYGVIEGHKGGLTALSWLSQSK-ILSTSADSTVSIWDAETGQRL 109          
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A7S1NRB8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NRB8_9EUGL)

HSP 1 Score: 64.7 bits (156), Expect = 6.510e-11
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   19 VYVAKFSPRDSLVASAGFDRTLRLWEGAY-PYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVG 249
            +Y A FSP  SL+A  G+D  + LW GA      +  L GH   +S L +APDGR+LLSAS D TV  W   TG+  G
Sbjct:    2 IYGADFSPDGSLLALGGWDGRVSLWGGANGALCLLRTLTGHTGFVSALAFAPDGRTLLSASGDATVRVWCPATGESAG 79          
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A4P6XGR8_9ASCO (Prp8 binding protein n=1 Tax=Metschnikowia aff. pulcherrima TaxID=2163413 RepID=A0A4P6XGR8_9ASCO)

HSP 1 Score: 66.6 bits (161), Expect = 1.200e-10
Identity = 36/86 (41.86%), Postives = 46/86 (53.49%), Query Frame = 1
Query:    1 SGHTAAVYVAKFSPRDSLVASAGFDRTLRLW----EGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRV 246
            SGH  A    KFSP    +ASAG DRT+RLW    +          +EGH+  ++ L W    + + + S D TVA WD ETGQRV
Sbjct:   34 SGHEGAALCVKFSPDGQNIASAGLDRTIRLWNLPTDAKDEVPNYGVIEGHKGAVTCLDWLAQSK-IFTGSADSTVAFWDAETGQRV 118          
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Match: A0A3M0ITQ3_HIRRU (Sodium/potassium-transporting ATPase subunit beta-1-interacting protein n=1 Tax=Hirundo rustica rustica TaxID=333673 RepID=A0A3M0ITQ3_HIRRU)

HSP 1 Score: 65.9 bits (159), Expect = 3.090e-10
Identity = 39/106 (36.79%), Postives = 50/106 (47.17%), Query Frame = 1
Query:    1 SGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDG-----RSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEG 303
            SGH   VY  KF P  + +ASAGFDR + LW         A L+GH   + +L +  DG     +  L     QTVA WD+ETG+RV  +      V     A  G
Sbjct:   24 SGHEGEVYCCKFHPNGNTLASAGFDRLILLWNVYGDCDNFATLKGHSGAVMELHYNTDGSGCRLQHALLGIHGQTVAVWDSETGERVKRLKGHTSFVNSCYPARRG 129          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12193.1385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNQ7_9PHAE4.420e-63100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSR1_9STRA1.580e-2856.00WD40-repeat-containing domain protein (Fragment) n... [more]
A0A1V9Z1V2_9STRA4.730e-1746.88Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0QW05_SAPDV1.100e-1548.91Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1A0HJF3_9ASCO1.280e-1240.95Uncharacterized protein n=1 Tax=Metschnikowia bicu... [more]
A9V9T1_MONBE2.490e-1141.98Lactoylglutathione lyase n=1 Tax=Monosiga brevicol... [more]
A0A512UMM7_9ASCO3.210e-1143.02Uncharacterized protein n=1 Tax=Metschnikowia sp. ... [more]
A0A7S1NRB8_9EUGL6.510e-1146.15Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A4P6XGR8_9ASCO1.200e-1041.86Prp8 binding protein n=1 Tax=Metschnikowia aff. pu... [more]
A0A3M0ITQ3_HIRRU3.090e-1036.79Sodium/potassium-transporting ATPase subunit beta-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12193contigE-siliculosus-1a_F_contig12193:692..1541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size330
Model size331
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelPeronosporales
COG Functional cat.S
EggNOG OGs3Q7SN@4776,KOG0266@1,KOG0266@2759
EggNOG free text desc.WD domain, G-beta repeat
KEGG Pathwayko04934,map04934
KEGG koko:K14963
Seed eggNOG ortholog272952.HpaP812042
Seed ortholog evalue1.3e-14
Seed ortholog score85.9
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927736.5785036-CDS-E-siliculosus-1a_F_contig12193:691..8141622927736.5785036-CDS-E-siliculosus-1a_F_contig12193:691..814Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12193 692..814 -
1696318660.6947033-CDS-E-siliculosus-1a_F_contig12193:691..8141696318660.6947033-CDS-E-siliculosus-1a_F_contig12193:691..814Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12193 692..814 -
1622927736.5906854-CDS-E-siliculosus-1a_F_contig12193:1334..15411622927736.5906854-CDS-E-siliculosus-1a_F_contig12193:1334..1541Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12193 1335..1541 -
1696318660.7059302-CDS-E-siliculosus-1a_F_contig12193:1334..15411696318660.7059302-CDS-E-siliculosus-1a_F_contig12193:1334..1541Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12193 1335..1541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12193.1385.1prot_E-siliculosus-1a_F_contig12193.1385.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12193 692..1541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12193.1385.1

>prot_E-siliculosus-1a_F_contig12193.1385.1 ID=prot_E-siliculosus-1a_F_contig12193.1385.1|Name=mRNA_E-siliculosus-1a_F_contig12193.1385.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=110bp
SGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLI
SDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAE
GGAEGGVGDG
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mRNA from alignment at E-siliculosus-1a_F_contig12193:692..1541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12193.1385.1 ID=mRNA_E-siliculosus-1a_F_contig12193.1385.1|Name=mRNA_E-siliculosus-1a_F_contig12193.1385.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=850bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12193:692..1541- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCGGGGCACACCGCGGCTGTGTATGTGGCCAAATTCTCCCCGCGAGACAG CCTTGTCGCCTCCGCCGGTTTCGACCGGACCCTGCGGCTGTGGGAGGGCG CCTACCCTTACAGCCAGGTGGCGTGCTTGGAGGGGCACCGCCAGTTGATC AGCGACCTCTGCTGGGCCCCCGACGGGAGGTCGCTCCTCAGCGCTTCGTT CGATCAGGTTTGGGGGCTCTTTTGTGGGTTGAATGAGTTGCACCTCGGAG ATGACGCGCAGTGTAGGCAGAAGTGGGGTGGTGTCGAAATTTTGCTAGGT TGGTTGGCTTCTGACGGGATATGGGTTAGACGGTGCTGGAACTCTAGTCA GGCATCAGTAGTTTGGGGCTCCGCAGTTTGAGAGCTCCCGCCGACCGTGG CGGGGGAGGGTATGACGCACAACCGGGCCTCTCTCTCCCTCTCCCTCTCT CTGGTGTATTGTGGTGGAACAGCGTTGTACATACCACAAGGAAGCGTTGT TCGTTGCTGTACATGCTAGCCGTACCCGTTGTTGGTAACTTCTGCCATGC CGGCCCTCTATGACCACACGCCATGGCCATGCCAGCCTTTACCTGTTGTT ACCAGGTAATTACTGCCGTGCCGTCCCTCTATGATCACACGTCACGGCCA TTGTGTTGTCTCCTCAAGCTACAGCAAGGATTCCTCGCCGCCGACCCTCC CCCCCCCCCCCTCTCGCCGCGCTCCAGACCGTCGCCAAGTGGGACACGGA AACCGGCCAGAGAGTGGGCAACATGCTCTCGCTCGAAGGATTAGTGCAGT GCGTCCAAGTGGCGGCGGAAGGCGGAGCCGAGGGCGGAGTAGGAGACGGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12193:692..1541-

>mRNA_E-siliculosus-1a_F_contig12193.1385.1 ID=mRNA_E-siliculosus-1a_F_contig12193.1385.1|Name=mRNA_E-siliculosus-1a_F_contig12193.1385.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12193:692..1541- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCGGGGCACACCGCGGCTGTGTATGTGGCCAAATTCTCCCCGCGAGACAG
CCTTGTCGCCTCCGCCGGTTTCGACCGGACCCTGCGGCTGTGGGAGGGCG
CCTACCCTTACAGCCAGGTGGCGTGCTTGGAGGGGCACCGCCAGTTGATC
AGCGACCTCTGCTGGGCCCCCGACGGGAGGTCGCTCCTCAGCGCTTCGTT
CGATCAGTCGGGGCACACCGCGGCTGTGTATGTGGCCAAATTCTCCCCGC
GAGACAGCCTTGTCGCCTCCGCCGGTTTCGACCGGACCCTGCGGCTGTGG
GAGGGCGCCTACCCTTACAGCCAGGTGGCGTGCTTGGAGGGGCACCGCCA
GTTGATCAGCGACCTCTGCTGGGCCCCCGACGGGAGGTCGCTCCTCAGCG
CTTCGTTCGATCAGACCGTCGCCAAGTGGGACACGGAAACCGGCCAGAGA
GTGGGCAACATGCTCTCGCTCGAAGGATTAGTGCAGTGCGTCCAAGTGGC
GGCGGAAGGCGGAGCCGAGGGCGGAGTAGGAGACGGTACCGTCGCCAAGT
GGGACACGGAAACCGGCCAGAGAGTGGGCAACATGCTCTCGCTCGAAGGA
TTAGTGCAGTGCGTCCAAGTGGCGGCGGAAGGCGGAGCCGAGGGCGGAGT
AGGAGACGGT
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