mRNA_E-siliculosus-1a_F_contig1195.1236.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: D8LID9_ECTSI (Proteasome subunit alpha type n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LID9_ECTSI) HSP 1 Score: 525 bits (1351), Expect = 3.210e-188 Identity = 261/263 (99.24%), Postives = 263/263 (100.00%), Query Frame = 1
Query: 1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDEGDGEEKAPAPDAGMA 789
MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPH+FQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFE+FENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDEGDGEEKAPAPDAGMA
Sbjct: 1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHLFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEDFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDEGDGEEKAPAPDAGMA 263
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A836CE23_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE23_9STRA) HSP 1 Score: 381 bits (978), Expect = 2.400e-131 Identity = 188/266 (70.68%), Postives = 222/266 (83.46%), Query Frame = 1
Query: 1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDEGDGEEKA--PAP-DAGMA 789
MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQG A LGL S +H VL ALKR+PNE+ + Q+KI K+D +MG++IAGLTADAR LAKYMRTE LNHKYVYGT +QA+RL DLADMHQR TQSYVRRPYGVGML+AAHD TGPH+ +T PSGNYFEYVAMAIGARSQSAKTYLEKH+++F +D+L+KH LKALSGC+TGDKELD +++AIVG + FE ++G +LQ ++DAIE+EG+AA P G+ E A PAP D G+A
Sbjct: 1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGSACLGLTSKTHAVLCALKRSPNELGSYQEKIMKIDDHMGISIAGLTADARMLAKYMRTEALNHKYVYGTQLQANRLATDLADMHQRCTQSYVRRPYGVGMLIAAHDATGPHLMETSPSGNYFEYVAMAIGARSQSAKTYLEKHYQDFPAASVDDLIKHGLKALSGCITGDKELDVASVSVAIVGAGQAFEEVQGARLQAFLDAIEVEGDAAAPAPAGEPEAPADVPAPMDEGIA 266
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A4D9CTI6_9STRA (Proteasome subunit alpha type n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTI6_9STRA) HSP 1 Score: 354 bits (908), Expect = 1.110e-120 Identity = 173/241 (71.78%), Postives = 208/241 (86.31%), Query Frame = 1
Query: 1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGN 723
MFRNQYDTDVTVWSPQGRLHQVEYA+EAVKQG +LGLRS VVLAALKR+ NE+S+ QKKIFK+D+++G+AI+GLTADARSLAKYMRTE LNHKYVYG+ +QASRLVLD+AD HQR TQSYVRRPYGVG+L+A++DQTGPH++QT PSG Y+EY+A AIG+R+QS KTYLEK+ EFE+ DEL+KHALKALSG GDKEL + ++A+VGKD E +EGE LQ Y+DAIE+EG+
Sbjct: 1 MFRNQYDTDVTVWSPQGRLHQVEYALEAVKQGACALGLRSKDFVVLAALKRSANELSSYQKKIFKVDNHIGIAISGLTADARSLAKYMRTEALNHKYVYGSALQASRLVLDVADKHQRCTQSYVRRPYGVGLLIASYDQTGPHLYQTDPSGAYYEYIAQAIGSRAQSGKTYLEKYHAEFESLGQDELIKHALKALSG-TAGDKELSKDNASVAVVGKDHPLEIIEGEALQRYLDAIEVEGD 240
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: W7TFX4_9STRA (Proteasome subunit alpha n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFX4_9STRA) HSP 1 Score: 353 bits (905), Expect = 8.110e-119 Identity = 172/241 (71.37%), Postives = 208/241 (86.31%), Query Frame = 1
Query: 1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGN 723
MFRNQYDTDVTVWSPQGRLHQVEYA+EAVKQG +LGLRS VVLAALKR+ NE+S+ QKKIFK+D+++G+AI+GLTADARSLAKYMRTE LNHKYVYG+ +QASRLV+D+AD HQR TQSYVRRPYGVG+L+A++DQTGPH++QT PSG Y+EY+A AIG+R+QS KTYLEK+ EFE+ DEL+KHALKALSG GDKEL + ++A+VGKD E +EGE LQ Y+DAIE+EG+
Sbjct: 1 MFRNQYDTDVTVWSPQGRLHQVEYALEAVKQGACALGLRSKDFVVLAALKRSANELSSYQKKIFKVDNHIGIAISGLTADARSLAKYMRTEALNHKYVYGSALQASRLVVDVADKHQRCTQSYVRRPYGVGLLIASYDQTGPHLYQTDPSGAYYEYIAQAIGSRAQSGKTYLEKYHAEFESLGQDELIKHALKALSG-TAGDKELSKDNASVAVVGKDHPLEIIEGEALQRYLDAIEVEGD 240
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A7S3GRX0_9STRA (Proteasome subunit alpha type n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRX0_9STRA) HSP 1 Score: 348 bits (892), Expect = 1.980e-118 Identity = 166/248 (66.94%), Postives = 204/248 (82.26%), Query Frame = 1
Query: 1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDE 744
MFRNQYDTDVTVWSPQGRLHQVEYA EAV QG A LGLRS +HVVLAALKR+PNE++A QKKI K+D +MG+A++GLTAD RSL KYMRTE LN+KYVYGT +Q SRLVLDLADMHQ+ TQSYVRRPYGVG+LV +DQTGPH++ T PSGNY+EY AMAIG+RSQ+++TYLEK FE F N LD+L+KHALKAL+ + GD ELD+ ++++VG ++ F+ +EG LQ Y+DA+ +EG +E
Sbjct: 1 MFRNQYDTDVTVWSPQGRLHQVEYATEAVNQGTACLGLRSKTHVVLAALKRSPNELAANQKKIHKIDDHMGIAMSGLTADGRSLVKYMRTEALNNKYVYGTPIQGSRLVLDLADMHQKCTQSYVRRPYGVGLLVGTYDQTGPHLYLTEPSGNYYEYYAMAIGSRSQTSRTYLEKEFESFGNASLDDLIKHALKALAASLAGDSELDSKNASISMVGANQAFQIIEGPALQKYLDAVAVEGEQEMEQEE 248
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A7S2XQH4_9STRA (Proteasome subunit alpha type n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQH4_9STRA) HSP 1 Score: 344 bits (883), Expect = 7.280e-117 Identity = 164/241 (68.05%), Postives = 203/241 (84.23%), Query Frame = 1
Query: 1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQ-TGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEG 720
MFRNQYDTDVTVWSP+GRL QVEYAME+VKQG A +G+RS SH VL ALKR+ +E+S+ QKKI ++D ++G+ IAGLTADARSLAK+M ECLNHKYVYGT M +SRLV DLAD HQRTTQ+YVRRPYGVG+LVA++D+ TGPH++QTCPSGN +EY A AIGARSQS +TYLEKH+E FE D+L+ HAL+AL+GCVTGD EL + ++A+VGK + F +EG++LQPY+D +ELEG
Sbjct: 1 MFRNQYDTDVTVWSPEGRLLQVEYAMESVKQGSACVGMRSSSHTVLGALKRSVSELSSHQKKIIEIDDHIGIGIAGLTADARSLAKWMMNECLNHKYVYGTPMPSSRLVTDLADRHQRTTQTYVRRPYGVGLLVASYDEKTGPHLYQTCPSGNIYEYYASAIGARSQSGRTYLEKHYESFEEASKDDLIMHALRALAGCVTGDGELTRDNGSIAVVGKGESFILIEGDELQPYLDRLELEG 241
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A067BZB1_SAPPC (Proteasome subunit alpha type n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BZB1_SAPPC) HSP 1 Score: 342 bits (876), Expect = 4.220e-116 Identity = 162/239 (67.78%), Postives = 199/239 (83.26%), Query Frame = 1
Query: 1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSA-PQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIEL 714
MFRNQYDTDVTVWSPQG LHQ++YAMEAVKQG A LGLRS +HVVLA +KR E A PQKK+F++DS+MG+AIAGLTADARSLA++MRTECLNHK+VYG+ + +RLV D+AD Q TQSYVRRPYGVG+LVA D+ GPH+FQTCPSGNY+EY A+AIGARSQSA+TYLEKHFE F N D+L+KHAL+ + GC+ G +EL A+ +T+A+VG D+ F +EG LQPY+DA+E+
Sbjct: 1 MFRNQYDTDVTVWSPQGHLHQIDYAMEAVKQGSACLGLRSSTHVVLAGIKRVNAEQLADPQKKLFEIDSHMGMAIAGLTADARSLARFMRTECLNHKFVYGSALPVARLVADVADKKQECTQSYVRRPYGVGLLVAGVDKNGPHLFQTCPSGNYYEYNAIAIGARSQSARTYLEKHFETFPNSSKDDLIKHALQGIRGCLEGSQELSASNVTIAVVGADQKFILIEGADLQPYIDAVEV 239
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A1V9Z6U9_9STRA (Proteasome subunit alpha type n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6U9_9STRA) HSP 1 Score: 341 bits (874), Expect = 8.490e-116 Identity = 158/239 (66.11%), Postives = 201/239 (84.10%), Query Frame = 1
Query: 1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRA-PNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIEL 714
MFRNQYDTDVTVWSPQG LHQ++YAMEAVKQG A LGLRS ++VVLA + R E++ PQKK+F++D++MG+AIAGL+ADARSLA++MRTECLNHK+VYG+ M +RLV D+AD Q TQSYVRRPYGVG+LVA D+TGPH+FQTCPSGNY+EY A+AIGARSQSA+TYLEKHF+ F NCD +EL+KHAL+ + GC+ GD+EL + +A+VG ++ F +EG +LQPY+DA+E+
Sbjct: 1 MFRNQYDTDVTVWSPQGHLHQIDYAMEAVKQGSACLGLRSSNYVVLAGIMRVNAEELADPQKKLFEVDTHMGIAIAGLSADARSLARFMRTECLNHKFVYGSAMSVARLVADVADKKQECTQSYVRRPYGVGLLVAGVDKTGPHLFQTCPSGNYYEYNAIAIGARSQSARTYLEKHFQTFANCDKEELIKHALEGIRGCLEGDQELSIANIAVAVVGLNEAFHVIEGTKLQPYIDAVEV 239
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A6U3ZK57_9STRA (Proteasome subunit alpha type n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3ZK57_9STRA) HSP 1 Score: 341 bits (874), Expect = 1.380e-115 Identity = 163/240 (67.92%), Postives = 197/240 (82.08%), Query Frame = 1
Query: 1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEG 720
MFRN YDTDVTVWSP+GRL QVEYAME+VKQG A + LRS +H V+ ALKR+ +E+SA Q+KI ++D ++G+ IAGLTADAR+LAK+MR ECLNHKYVYGT + + RLV DLAD HQRTTQSYVRRPYGVG+LVA+ D+ GPHV+QTCPSGN +E A AIGARSQS +TYLEKH E FE C D+L+ HALKAL GCV+GD EL ++AIVGKD+ F +EGE+LQPY+D +ELEG
Sbjct: 1 MFRNMYDTDVTVWSPEGRLLQVEYAMESVKQGSACIALRSTTHSVIGALKRSVSELSAHQQKILEIDDHLGIGIAGLTADARTLAKWMRNECLNHKYVYGTALPSGRLVTDLADRHQRTTQSYVRRPYGVGLLVASFDKNGPHVYQTCPSGNVYECYATAIGARSQSGRTYLEKHCESFEECSKDDLIMHALKALVGCVSGDGELTRENGSVAIVGKDQKFTLIEGEELQPYLDRLELEG 240
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A6S9F1R3_9STRA (Proteasome subunit alpha type n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9F1R3_9STRA) HSP 1 Score: 340 bits (872), Expect = 4.070e-115 Identity = 158/240 (65.83%), Postives = 201/240 (83.75%), Query Frame = 1
Query: 1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEG 720
MFRNQYDTDVTVWSP+GRL QVEYAME+VKQG A LGLRS +H VL ALKR+ +E ++ QKK+ ++D +MG+ IAGLTADAR++AK+MR ECLNHKYVYGT M + RL+ DLAD HQRTTQ+YVRRPYGVG+LVA++D+ GPH++QTCPSGN +EY A AIGARSQS +TYLEKH+E + D+L+ HAL+AL+GCV+GD EL + ++A+VGKD+ F +EG++LQPY+D +ELEG
Sbjct: 1 MFRNQYDTDVTVWSPEGRLLQVEYAMESVKQGSACLGLRSSTHSVLGALKRSVSEHASHQKKLLEIDDHMGIGIAGLTADARTIAKWMRNECLNHKYVYGTPMPSGRLLTDLADKHQRTTQTYVRRPYGVGLLVASYDKNGPHLYQTCPSGNLYEYYASAIGARSQSGRTYLEKHYETLNDASRDDLIMHALRALTGCVSGDVELTKDNGSIAVVGKDEKFTLIEGDELQPYLDRLELEG 240 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1195.1236.1 >prot_E-siliculosus-1a_F_contig1195.1236.1 ID=prot_E-siliculosus-1a_F_contig1195.1236.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=264bp MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKback to top mRNA from alignment at E-siliculosus-1a_F_contig1195:2184..6450- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1195.1236.1 ID=mRNA_E-siliculosus-1a_F_contig1195.1236.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4267bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1195:2184..6450- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1195:2184..6450- >mRNA_E-siliculosus-1a_F_contig1195.1236.1 ID=mRNA_E-siliculosus-1a_F_contig1195.1236.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1584bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1195:2184..6450- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |