Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match:
D8LIU5_ECTSI (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU5_ECTSI)
HSP 1 Score: 197 bits (500), Expect = 5.590e-60
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2
Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL
Sbjct: 58 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 148
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match:
A0A6H5JI77_9PHAE (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI77_9PHAE)
HSP 1 Score: 196 bits (497), Expect = 7.980e-59
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 2
Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
RNVWADNLETEMVIIRELV+DYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL
Sbjct: 61 RNVWADNLETEMVIIRELVQDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 151
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match:
A0A835Z498_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z498_9STRA)
HSP 1 Score: 157 bits (398), Expect = 3.140e-45
Identity = 73/91 (80.22%), Postives = 79/91 (86.81%), Query Frame = 2
Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
RNVW DNLE EM IRE+VE YPYVAMDTEFPGVVARP+GDF Q D+QYQTLRCNVD+LK+IQLGLSFANEKGE E GCC WQFNF F+L
Sbjct: 35 RNVWVDNLEEEMAKIREVVETYPYVAMDTEFPGVVARPIGDFGQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAE-GCCCWQFNFKFSL 124
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match:
A0A836C813_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C813_9STRA)
HSP 1 Score: 155 bits (393), Expect = 2.000e-44
Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 2
Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
RNVWADNLE EM IRE+VE YPY+AMDTEFPGVVARP+GD +Q D+QYQTLRCNVD+LK+IQLGLSFANEKGE E GCC WQFNF F+L
Sbjct: 31 RNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAE-GCCCWQFNFKFSL 120
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match:
A0A8H7Q458_MORIS (Poly(A)-specific ribonuclease n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q458_MORIS)
HSP 1 Score: 142 bits (357), Expect = 1.160e-39
Identity = 66/92 (71.74%), Postives = 78/92 (84.78%), Query Frame = 2
Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFN-QPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
R VWA+NLE EMV +R+LVEDYPY+AMDTEFPGVVARP+G F D+ YQTLRCNVD+LK+IQLG++FA+E G LPE+ C TWQFNF FNL
Sbjct: 8 REVWAENLEEEMVHLRDLVEDYPYLAMDTEFPGVVARPIGTFRTSSDYHYQTLRCNVDLLKIIQLGVTFADENGNLPENAC-TWQFNFRFNL 98
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match:
A0A197JNR4_9FUNG (Poly(A)-specific ribonuclease n=3 Tax=Mortierellaceae TaxID=4854 RepID=A0A197JNR4_9FUNG)
HSP 1 Score: 139 bits (350), Expect = 3.540e-39
Identity = 62/92 (67.39%), Postives = 78/92 (84.78%), Query Frame = 2
Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFN-QPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
R VWA+NL+ EM ++R+LV+ YPY+AMDTEFPGVVARP+G+F D+ YQTLRCNVD+LKMIQLG++FA+E G +P+D C TWQFNF FNL
Sbjct: 11 REVWAENLDREMALLRDLVDQYPYLAMDTEFPGVVARPIGNFRTSADYHYQTLRCNVDLLKMIQLGVTFADENGNVPKDAC-TWQFNFKFNL 101
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match:
A0A4P9Z628_9FUNG (Poly(A)-specific ribonuclease n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z628_9FUNG)
HSP 1 Score: 139 bits (349), Expect = 4.880e-39
Identity = 64/92 (69.57%), Postives = 78/92 (84.78%), Query Frame = 2
Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQP-DFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
R VWADNLE+EM ++R+LVE YPY+AMDTEFPGVVARP+G F D+ YQTLRCNVD+LK+IQLGL+FANE+GE+P G TWQF+F F+L
Sbjct: 10 REVWADNLESEMALLRDLVEHYPYLAMDTEFPGVVARPIGSFRTASDYHYQTLRCNVDLLKIIQLGLTFANEQGEMPP-GAATWQFHFKFSL 100
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match:
A0A8H7ZUU1_9FUNG (Poly(A)-specific ribonuclease (Fragment) n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H7ZUU1_9FUNG)
HSP 1 Score: 135 bits (339), Expect = 7.390e-39
Identity = 60/92 (65.22%), Postives = 77/92 (83.70%), Query Frame = 2
Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFN-QPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
R VWADNL+ EM ++R+LV+ YPY+AMDTEFPGVVARP+G+F D+ YQTLRCNVD+LK+IQLG++ A+E+G LP G CTWQFNF F++
Sbjct: 11 REVWADNLDGEMAVLRDLVDTYPYLAMDTEFPGVVARPIGNFRTSADYHYQTLRCNVDLLKIIQLGITLADERGNLPP-GVCTWQFNFKFSI 101
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match:
A0A068RV61_9FUNG (Poly(A)-specific ribonuclease n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RV61_9FUNG)
HSP 1 Score: 139 bits (350), Expect = 1.150e-38
Identity = 64/92 (69.57%), Postives = 76/92 (82.61%), Query Frame = 2
Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFN-QPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
R VWADNLE EM +R+LVEDYPY+AMDTEFPGVVARP+G F D+ YQTLRCNVD+LK+IQLG++FA+E G LP + CTWQFNF FN+
Sbjct: 10 REVWADNLEEEMAYLRDLVEDYPYLAMDTEFPGVVARPIGTFRTSSDYHYQTLRCNVDLLKIIQLGVTFADEHGNLPRN-VCTWQFNFKFNI 100
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match:
A0A397VEI4_9GLOM (Poly(A)-specific ribonuclease n=2 Tax=Glomeromycetes TaxID=214506 RepID=A0A397VEI4_9GLOM)
HSP 1 Score: 138 bits (347), Expect = 1.540e-38
Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 2
Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFN-QPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
+ VWA+NLE EM ++R+LVE YPY+AMDTEFPGVVARP+G+F D+ YQTLRCNVD+LK+IQLG++FA+E G LP D CTWQFNF FNL
Sbjct: 11 KEVWAENLEEEMSVLRDLVEKYPYLAMDTEFPGVVARPIGNFRTSSDYHYQTLRCNVDLLKIIQLGITFADENGALPPD-TCTWQFNFRFNL 101
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 5.59e-60 / Id = 100.00 Expect = 7.98e-59 / Id = 98.90 Expect = 3.14e-45 / Id = 80.22 Expect = 2.00e-44 / Id = 79.12 Expect = 1.16e-39 / Id = 71.74 Expect = 3.54e-39 / Id = 67.39 Expect = 4.88e-39 / Id = 69.57 Expect = 7.39e-39 / Id = 65.22 Expect = 1.15e-38 / Id = 69.57 Expect = 1.54e-38 / Id = 68.48 Sequence D8LIU5_ECTSI A0A6H5JI77_9PHAE A0A835Z498_9STRA A0A836C813_9STRA A0A8H7Q458_MORIS A0A197JNR4_9FUNG A0A4P9Z628_9FUNG A0A8H7ZUU1_9FUNG A0A068RV61_9FUNG A0A397VEI4_9GLOM Pages
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10080.111.1
>prot_E-siliculosus-1a_F_contig10080.111.1 ID=prot_E-siliculosus-1a_F_contig10080.111.1|Name=mRNA_E-siliculosus-1a_F_contig10080.111.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=92bp
PKRVGGQPRDRDGDHPRAGGGLPLRGHGHRVPGRGGKARGRLQPAGLPVP back to top mRNA from alignment at E-siliculosus-1a_F_contig10080:124..1057-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10080.111.1 ID=mRNA_E-siliculosus-1a_F_contig10080.111.1|Name=mRNA_E-siliculosus-1a_F_contig10080.111.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=934bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10080:124..1057- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)CCGAAACGTGTGGGCGGACAACCTCGAGACCGAGATGGTGATCATCCGCG
AGCTGGTGGAGGACTACCCCTACGTGGCCATG GTGAGAGAGCAGCAAGCG
CATCGCTGTCCCGGTTTGAAGAAATCGCCGAGCCGTGTTATCTGCTGTGC
TCGCGCGGGTGGACACCGCCCCCCCCCCCAGACCGACTGTCGTAGCTGGT
TTACTTTACTATAGCAAACCAAGAGGGCCTGAAGCACCTGCTGATTTCTA
AGGGAGCTCTGCACCAGGCCGTTCCGAAACCACGTGGCATTGGTTTTCCT
GTTGGTTGGGGAGCGATCGCCTTGGTCTAGCAGGAGGTGGTGCCATCACT
CGCAGAACTATGTACGCCTGTTGCCCTGATGTGCCGCAACGGCAATCTTG
ACTCAAGCTTGCCGTGCCCGTGCGTGTACACGCCGCTATGGTGGGATAAC
CAGGACACCGAGTTCCCGGGCGTGGTGGCAAGGCCCGTGGGAGACTTCAA
CCAGCCGGACTTCCAGTACCAGACACTCAG GTGGACGGGGGAAGGGATCA
GATAGCTTATGCACCTGAAAAAATCACGGATATCAGCGGCCTTTTGTGTC
TGTAAGACCCTCACAACAAGGAGAAACTCACAGCACGGCGCTGACGGCCT
CGTTTGTCCGTAAGCGGAAGGCTAGACACAGAAACAGGCAAGCGGTCGGC
GCTTGCCTCTTCTCGTTCCACCAGTCTCTCTCTCTATATATACATCTCTC
TCTTCCCCTTAGTTTATGTCTCTCGGTCGGCCGTCTCGTCCCCGTCTCTC
GTTGGCCCGGGTGAAGGTGCAACGTGGACATGCTCAAGATGATCCAGCTT
GGGCTGTCCTTCGCCAACGAGAAGGGAGAGCTGCCCGAGGATGGCTGCTG
CACGTGGCAGTTCAACTTCGCCTTCAACTTGAG back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10080:124..1057-
>mRNA_E-siliculosus-1a_F_contig10080.111.1 ID=mRNA_E-siliculosus-1a_F_contig10080.111.1|Name=mRNA_E-siliculosus-1a_F_contig10080.111.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10080:124..1057- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top