mRNA_E-siliculosus-1a_F_contig1151.993.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1151.993.1
Unique NamemRNA_E-siliculosus-1a_F_contig1151.993.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1151.993.1 vs. uniprot
Match: D7FPR7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR7_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.380e-37
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1
Query:    1 QAGEEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 198
            QAGEEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG
Sbjct:  112 QAGEEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 177          
BLAST of mRNA_E-siliculosus-1a_F_contig1151.993.1 vs. uniprot
Match: A0A836CFW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.920e-17
Identity = 36/60 (60.00%), Postives = 51/60 (85.00%), Query Frame = 1
Query:   19 DDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 198
            D+ LTPAQ+R+++++  ++ K+I+ +V+ THR+RIE FN+ LASMTEHNDIPR SAAGNG
Sbjct:   71 DEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 130          
BLAST of mRNA_E-siliculosus-1a_F_contig1151.993.1 vs. uniprot
Match: A0A835YYZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYZ7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.750e-17
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 1
Query:   13 EVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 198
            +VD  LTPAQ+RF++ QL RE + +R +V++THR+R+E FN  +A +TEHNDIPR SAAGNG
Sbjct:   69 DVDSGLTPAQKRFKEAQLARERQVMRELVKKTHRQRVEEFNQKIAKLTEHNDIPRISAAGNG 130          
BLAST of mRNA_E-siliculosus-1a_F_contig1151.993.1 vs. uniprot
Match: A0A7R9VT13_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VT13_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.070e-14
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    4 AGEEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 198
            AG   DDM T A+RR  K +LERE K +  +  Q+HRER+ENF+  L S+TEHNDIPR SAAGNG
Sbjct:   55 AGSSDDDM-TEAERRAMKVKLERERKDLEKIARQSHRERVENFSEKLGSLTEHNDIPRVSAAGNG 118          
BLAST of mRNA_E-siliculosus-1a_F_contig1151.993.1 vs. uniprot
Match: A0A0P1A8L4_PLAHL (Conserved alpha-helical protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8L4_PLAHL)

HSP 1 Score: 69.7 bits (169), Expect = 7.480e-14
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    4 AGEEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 198
            AG EVDDM TPAQRR  + + +RE ++I  M  +T+RERIE  N  L S+TEH+D+PR SAAGNG
Sbjct:   49 AGVEVDDM-TPAQRRHAEHKKKREQEEIEKMASKTYRERIEELNQHLGSLTEHHDVPRVSAAGNG 112          
BLAST of mRNA_E-siliculosus-1a_F_contig1151.993.1 vs. uniprot
Match: A0A7S2WV15_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV15_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.360e-13
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   10 EEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 198
            E+ + +LT A++R RKK  ERE +  R +  +THR+++E FN  L+S++EHNDIPR SAAGNG
Sbjct:   69 EDPEALLTEAEKRHRKKMRERETEMARSLTAKTHRQKVEEFNDRLSSLSEHNDIPRVSAAGNG 131          
BLAST of mRNA_E-siliculosus-1a_F_contig1151.993.1 vs. uniprot
Match: A0A482S2J5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2J5_9ARCH)

HSP 1 Score: 68.2 bits (165), Expect = 3.400e-13
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   19 DDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 198
            D  LT AQRRF+++Q E+E KKI+    ++ R+R+E FN  L+ +TEHNDIPR SAAGNG
Sbjct:   58 DAHLTEAQRRFKRRQQEKEEKKIKVEASKSFRDRVEEFNYKLSKLTEHNDIPRVSAAGNG 117          
BLAST of mRNA_E-siliculosus-1a_F_contig1151.993.1 vs. uniprot
Match: W7TTM0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTM0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.660e-13
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   13 EVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 198
            E DD LT  QRR   K  ERE + I+ +V ++HRERI+ FN  L+ +TEHNDIPR SAAGNG
Sbjct:   59 EKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120          
BLAST of mRNA_E-siliculosus-1a_F_contig1151.993.1 vs. uniprot
Match: A0A2R5GLX7_9STRA (Protein FAM32A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLX7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.930e-13
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   28 LTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 198
            LTPAQRRF  KQ ERE ++I+ M   THRER++ FN  L+ ++EH+DIP+ SAAGNG
Sbjct:  307 LTPAQRRFELKQREREAERIKEMTRMTHRERVDAFNEKLSKLSEHHDIPKVSAAGNG 363          
BLAST of mRNA_E-siliculosus-1a_F_contig1151.993.1 vs. uniprot
Match: A0A7S4JUH8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JUH8_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.470e-12
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   13 EVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 198
            ++DD +T A+RR  K +LERE K +  + +Q+HRER+E+F+  L ++TE NDIPR SAAGNG
Sbjct:   59 DIDDDMTDAERRAAKFKLERERKDLEKVAKQSHRERVEDFSEKLGNLTELNDIPRVSAAGNG 120          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1151.993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPR7_ECTSI2.380e-37100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CFW3_9STRA1.920e-1760.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYZ7_9STRA7.750e-1759.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9VT13_9STRA1.070e-1460.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A0P1A8L4_PLAHL7.480e-1458.46Conserved alpha-helical protein n=1 Tax=Plasmopara... [more]
A0A7S2WV15_9STRA2.360e-1352.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A482S2J5_9ARCH3.400e-1356.67Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
W7TTM0_9STRA3.660e-1358.06Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A2R5GLX7_9STRA5.930e-1359.65Protein FAM32A n=1 Tax=Hondaea fermentalgiana TaxI... [more]
A0A7S4JUH8_9STRA1.470e-1253.23Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1151contigE-siliculosus-1a_F_contig1151:35720..36258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size177
Model size201
Exons2
Ec32 orthologEc-20_001090.1
Ec32 ortholog descriptionProtein of unknown function DUF1754, eukaryotic
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04131,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelPeronosporales
COG Functional cat.S
EC1.3.1.21
EggNOG OGs3QG97@4776,KOG3410@1,KOG3410@2759
EggNOG free text desc.apoptotic process
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0097159,GO:1901363
KEGG ModuleM00101
KEGG Pathwayko00100,ko01100,ko01110,ko04142,map00100,map01100,map01110,map04142
KEGG ReactionR01451,R01456,R07487,R07492
KEGG koko:K00213,ko:K12393,ko:K13120,ko:K17301
KEGG rclassRC00138
Preferred nameFAM32A
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.10530
Seed ortholog evalue3.7e-08
Seed ortholog score63.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1151.993.1prot_E-siliculosus-1a_F_contig1151.993.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1151 35720..36234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927666.7806613-CDS-E-siliculosus-1a_F_contig1151:35719..358451622927666.7806613-CDS-E-siliculosus-1a_F_contig1151:35719..35845Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1151 35720..35845 -
1696318631.4624546-CDS-E-siliculosus-1a_F_contig1151:35719..358451696318631.4624546-CDS-E-siliculosus-1a_F_contig1151:35719..35845Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1151 35720..35845 -
1622927666.793168-CDS-E-siliculosus-1a_F_contig1151:36183..362341622927666.793168-CDS-E-siliculosus-1a_F_contig1151:36183..36234Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1151 36184..36234 -
1696318631.47723-CDS-E-siliculosus-1a_F_contig1151:36183..362341696318631.47723-CDS-E-siliculosus-1a_F_contig1151:36183..36234Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1151 36184..36234 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927666.8075905-UTR-E-siliculosus-1a_F_contig1151:36234..362581622927666.8075905-UTR-E-siliculosus-1a_F_contig1151:36234..36258Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1151 36235..36258 -
1696318631.4851432-UTR-E-siliculosus-1a_F_contig1151:36234..362581696318631.4851432-UTR-E-siliculosus-1a_F_contig1151:36234..36258Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1151 36235..36258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1151.993.1

>prot_E-siliculosus-1a_F_contig1151.993.1 ID=prot_E-siliculosus-1a_F_contig1151.993.1|Name=mRNA_E-siliculosus-1a_F_contig1151.993.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=59bp
MLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIP
RCSAAGNG*
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mRNA from alignment at E-siliculosus-1a_F_contig1151:35720..36258-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1151.993.1 ID=mRNA_E-siliculosus-1a_F_contig1151.993.1|Name=mRNA_E-siliculosus-1a_F_contig1151.993.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=539bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1151:35720..36258- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAAGCGGGCGAGGAGGTAGACGACATGCTGACGCCAGCCCAACGGCGATT CAGGAAGAAGCAGCTGGAACGCGAGGTGAGACACTCAACTTGTCGGATCG CTTCATGAAAATATGTTCGTCACGAGCTGCATGCTCATGGCAGGAAGCCT GTGTATCGACTCTTGGAGACCCGCACATGCAAAGAGACTATAGAGTGTTG CTGACTTTGGTGGTGCATTTATTGTTGACGTTATATAGGGCTTGTGTACC TCTTGTTTGGGACGGTGCGCGTATTGCACGTTTATCACCCCACGTCGTCC AGACACGGAATTGATGGCACCATGATTGGCACCATTCGCCCGTTGACAAA TGTGGAAACGACGTCAACTTGTTCTAATTGCTATCTGAATGCTTTTTGCC CCTTGTGATGCAGGGGAAGAAGATTCGAGGAATGGTCGAGCAGACTCATC GCGAACGAATTGAAAACTTCAACGCTCTCCTTGCTTCAATGACCGAGCAC AACGACATCCCGAGATGCTCGGCTGCAGGCAACGGATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1151:35720..36258-

>mRNA_E-siliculosus-1a_F_contig1151.993.1 ID=mRNA_E-siliculosus-1a_F_contig1151.993.1|Name=mRNA_E-siliculosus-1a_F_contig1151.993.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=354bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1151:35720..36258- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGACGCCAGCCCAACGGCGATTCAGGAAGAAGCAGCTGGAACGCGA
GATGCTGACGCCAGCCCAACGGCGATTCAGGAAGAAGCAGCTGGAACGCG
AGGGGAAGAAGATTCGAGGAATGGTCGAGCAGACTCATCGCGAACGAATT
GAAAACTTCAACGCTCTCCTTGCTTCAATGACCGAGCACAACGACATCCC
GAGATGCTCGGCTGCAGGCAACGGATGAGGGAAGAAGATTCGAGGAATGG
TCGAGCAGACTCATCGCGAACGAATTGAAAACTTCAACGCTCTCCTTGCT
TCAATGACCGAGCACAACGACATCCCGAGATGCTCGGCTGCAGGCAACGG
ATGA
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