mRNA_E-siliculosus-1a_F_contig10053.97.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10053.97.1
Unique NamemRNA_E-siliculosus-1a_F_contig10053.97.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: D7G837_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G837_ECTSI)

HSP 1 Score: 542 bits (1397), Expect = 1.680e-191
Identity = 297/333 (89.19%), Postives = 309/333 (92.79%), Query Frame = 1
Query:    1 PPPSYEQVAIKPGGQATSVDGPPPQGLXXXXXXXXXXXXXXXDDVNDGAEGKRSAGGEEAGDDGLGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIAMVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGERGCRGFFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCMILLVGAEAEGDSVHAERMETAVGCFELILLIGRKYKTGSFQ 999
            PPPSYEQVAI+PGGQ            XXXXXXXXXXXXXX D+VN GAEG RSAGGEEAGDDGLGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIA+VVYPVLVLGVMLRVIFVRVLPP ATGLAFAVTQKD+YYTTNG+RGCRGFFSRVR+GL+EDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFA YAL+EAAVIA VGVLIDNSQ QLLIFLGLNVVQ VLVV LTPFANRVVESMAACRVGVNAFCM+LLVGAEAEGDSVHAERMETAVGCFELILLIGRK++  +F 
Sbjct:   54 PPPSYEQVAIEPGGQXXXXXXXXXXXXXXXXXXXXXXXXXXADNVNVGAEGTRSAGGEEAGDDGLGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIALVVYPVLVLGVMLRVIFVRVLPPVATGLAFAVTQKDTYYTTNGQRGCRGFFSRVRKGLEEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAVYALMEAAVIAGVGVLIDNSQVQLLIFLGLNVVQLVLVVRLTPFANRVVESMAACRVGVNAFCMVLLVGAEAEGDSVHAERMETAVGCFELILLIGRKHRQAAFS 386          
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: A0A6H5KCW7_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW7_9PHAE)

HSP 1 Score: 521 bits (1342), Expect = 7.230e-175
Identity = 286/320 (89.38%), Postives = 296/320 (92.50%), Query Frame = 1
Query:   10 SYEQVAIKPGGQATSVDGPPPQGLXXXXXXXXXXXXXXXDDVNDGAEGKRSAGGEEAGDDGLGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIAMVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGERGCRGFFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCMILLVGAEAEGDSVHAERMETAVGCFELILLI 969
            SYEQVAIKP GQ            XXXXXXXXXXXXXXXDDVN GAEG RSAGGEEAGDDGLGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQ+DVLRHGSGALVPVAAIA+VVYPVLVL VM+RV+F RV PP ATGLAFAVTQKDSYYTTNG+RGCRGFF RVR+GL+EDHSAFAWAKKGAWRTVENED KEQRLRNWFRIGFEPLFVDYTKAGSWFA YAL+EAAVIACVGVLID+SQ QLLIFLGLNVVQFVLV HLTPFANRVVESMAACRVGVNAFCM+LLVGAEAEGDSVHAERMETAVGCFELILLI
Sbjct:  612 SYEQVAIKPDGQXXXXXXXXXXXXXXXXXXXXXXXXXXXDDVNVGAEGTRSAGGEEAGDDGLGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQVDVLRHGSGALVPVAAIALVVYPVLVLWVMVRVVFARVFPPTATGLAFAVTQKDSYYTTNGQRGCRGFFWRVRKGLEEDHSAFAWAKKGAWRTVENEDAKEQRLRNWFRIGFEPLFVDYTKAGSWFALYALMEAAVIACVGVLIDSSQVQLLIFLGLNVVQFVLVAHLTPFANRVVESMAACRVGVNAFCMVLLVGAEAEGDSVHAERMETAVGCFELILLI 931          
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: D7G1B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B8_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 9.970e-62
Identity = 104/113 (92.04%), Postives = 107/113 (94.69%), Query Frame = 1
Query:  523 RGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGV 861
            +GL+EDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFA YAL+EAAVIA V VLIDNSQ QLLIFLGLNVVQ VLVV LTPFANRVVESMAACRVGV
Sbjct:  117 KGLEEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAVYALMEAAVIAGVEVLIDNSQVQLLIFLGLNVVQLVLVVRLTPFANRVVESMAACRVGV 229          
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 4.460e-58
Identity = 117/264 (44.32%), Postives = 163/264 (61.74%), Query Frame = 1
Query:  193 LGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAA-IAMVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGERGCRG----FFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCMILL-VGAEAEGDSVHAERMETAVGCFELILL 966
            L PVA+CR+ S+S W+HFPHVEL+F+ +A++GA+A+Q+  LR      V +AA +A+V YP+L+   +LR  FVRV P             D+    + E G R     F S+VR G +EDHS FAWA KG W T E ++   +R   WFRIGFEPLFVD+TK+G+WF A+ LVE A + C+G LID S  QL +F  L+ + F+L+V   PFAN V+ +M A  VG++A CM LL V A     +  A ++++ V   +L  L
Sbjct: 1020 LSPVAECREHSRSAWLHFPHVELVFLFFAYEGAVASQVSALREAGCPPVMIAAGLALVFYPILMFVAVLRTFFVRVRPNTLIVFTPKEADDDTGDAGDAEEGQRARSASFLSKVRAGWEEDHSLFAWANKGTWETAETDNEGTRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFANSVINAMGAGLVGIDAVCMALLAVSASRWEGTAAAGKVDSVVMLLQLFAL 1283          
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: D8LN89_ECTSI (Liver stage antigen 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN89_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 2.700e-56
Identity = 118/275 (42.91%), Postives = 175/275 (63.64%), Query Frame = 1
Query:  172 EEAGDDGLGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAI-AMVVYPVLVLGVMLRVIFVRV--------LPPAATGLAFAVTQKDSYYTTNGERGCRGFFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCM-ILLVGAEAEGDSVHAERMETAVGCFELILL 966
            E  G   L  +A+CR+RS+S+W+HFPHVEL+++L+AF+GA+AAQ+  +R  +  LV + A+ A++ +PVL+   ++   F ++        +P A      AV  +   YT+      R F S+VRRGLKE +S FAW+ KG W +V+  D +++R R+WFRIGFEPLFVD+T AGSWFA YAL+E    A VGV++DNS  QL +F   N V F+L+V L PFAN ++  M A   G++A CM +L V A+  G +  A ++++ V   +L+ L
Sbjct: 2383 ETVGRSKLSKIAECRERSQSVWLHFPHVELMYLLFAFEGAVAAQVSAIRENATLLVLILAVLALLFFPVLMTFNVMCTFFGKIRSKKHIVFIPNADD----AVEAESDLYTS-----VRSFGSKVRRGLKESYSMFAWSNKGEWESVDTPDEEDKRARDWFRIGFEPLFVDFTGAGSWFAVYALIELVANAVVGVVVDNSVLQLSLFGAFNTVSFLLLVVLKPFANGIINFMGAAVYGIDAACMAVLAVTADKWGGTERASQVDSVVVIVQLLTL 2648          
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 6.650e-56
Identity = 119/264 (45.08%), Postives = 165/264 (62.50%), Query Frame = 1
Query:  202 VAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIA-MVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGERGCRGFFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCMILLVGAEAEGDSVH-------AERMETAVGCFELILLI 969
            +A CR RS S+W++FPH+ELLF+L+AF+GA+A+Q+  +R G    V  +A A +VVYPVL++ +  R   VRV P   T + F    ++  + T+G    R F S+VR GLKEDHS FAWA  GAW TVE  D +  R  + FRIGFEPLFVD+TK  SWF  Y L+E   IAC  VL+D+S  QL +F GL+ + F+L+V   PFAN ++ +M AC   ++A  M +L       D+ H       A+RM+TAV   +L+ L+
Sbjct:  249 LADCRYRSSSVWLYFPHIELLFLLFAFEGAMASQLATMRGGGCPWVFYSACASLVVYPVLMIILSYRTHRVRVAPD--TLIVFKPVGEEENHGTDGTVP-RSFLSKVRTGLKEDHSMFAWANTGAWETVETPDEETVREGDQFRIGFEPLFVDFTKKASWFTVYFLLEMTGIACTAVLVDDSVVQLFLFCGLHSLSFLLLVIFRPFANSIINTMGACLTLIDAASMAMLA------DTAHRWQRTSRAKRMDTAVVVLQLVALV 503          
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 4.290e-53
Identity = 119/263 (45.25%), Postives = 161/263 (61.22%), Query Frame = 1
Query:  193 LGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIA-MVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGE--RGCRGFFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCMILLVGAEA--EGDSVHAERMETAVGCFELILL 966
            L PVA CR+ S S W+HFPHVEL+F+ +AF+GA+A+    +R+     +   AIA MV+YP+L+   ++R +FVRV P     L F    +D    TNG    G  GF SR +    E++S F+WA KG W TV+  +    R  +WFRIGFEP+FVDYTK G+WF   +LVE A IA VGV+IDNS  QLL+F GL    F+++V L PFAN V+  + AC V ++A C  LL  A    EG S  A  + +AVG  +++ L
Sbjct: 1601 LSPVAMCREHSTSAWLHFPHVELVFLFFAFEGAVASFASAIRNSECPEMFYTAIAAMVLYPLLMFATVVRTLFVRVRPDEL--LIFKTYDEDG---TNGNTPNGRGGFLSRFKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSYVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVCTGLLAVAALKWEGTS-RATDVNSAVGVLQIVSL 1857          
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 2.300e-51
Identity = 118/263 (44.87%), Postives = 160/263 (60.84%), Query Frame = 1
Query:  193 LGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIA-MVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGER-GCRG-FFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCMILLVGAEA--EGDSVHAERMETAVGCFELILL 966
            L PVA CR+ S S W+HFPHVEL+F+ +AF+GA+A+    +R+     +   AIA MV+YP+L+   ++R +FVRV P     L F    +D    TNG    CRG F S  +    E++S F+WA KG W TV+  +    R  +WFRIGFEP+FVDYTK G+WF   +LVE A IA VGV+IDNS  QLL+F GL    F+++V L PFAN V+  + AC V ++A    LL  A    EG S  A  + +AVG  +++ L
Sbjct: 1560 LSPVATCREHSTSAWLHFPHVELVFLFFAFEGAVASFASAIRNSECPEMFYTAIAAMVLYPLLMFATVVRTLFVRVRPDEL--LIFKTYDEDG---TNGNAPNCRGGFLSHFKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSNVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVSTGLLAVAALKWEGTS-RATDVNSAVGVLQIVSL 1816          
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: D7G5F3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F3_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 4.390e-50
Identity = 94/212 (44.34%), Postives = 139/212 (65.57%), Query Frame = 1
Query:  193 LGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIA-MVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGERGCRGFFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANR 825
            +G V++CR+ S+S W+H+PH+EL+F+L+AF+GA+ +Q+  LR  S + V  AA+A +V YPVL++ +++R   VRV   A   + F   + D      G  G    +S+   GL++D S FAWA KG W TV+  D   +R  +WFRIGFEPLF D+T+AGSWF  Y L+E AV+AC+ VL+DN+  Q  +F  ++ + F+L+V   PFANR
Sbjct:  183 IGQVSQCRELSQSAWLHYPHLELVFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLVFYPVLMVAMVVRTHRVRVRSDAL--IVFTSNESDE-----GSTGTSSIYSKTIAGLRKDSSLFAWADKGQWETVQTTDEDARRNADWFRIGFEPLFADFTQAGSWFIVYTLIEWAVLACIAVLVDNTAVQCGLFCAIHSMTFILLVACKPFANR 387          
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 2.370e-49
Identity = 106/252 (42.06%), Postives = 159/252 (63.10%), Query Frame = 1
Query:  193 LGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIA-MVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGERGCRGFFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCM-ILLVGAEAEGDSVHAERMETAV 942
            +G V+ CR+ S+S W+H+PH+EL+F+ +AF+GA+ +Q+  LR  + + +  AA+A +V+YP+L++ ++ R   V V P A   + FA ++     T     G     SR   GLK D S F+WA KG W TV+  + K +R  +WFRIGFEPLF D+T+AGSWF  Y L+E AV+A + VL+DNS  Q L+F  ++ + FVL+V   PFAN V+ ++AA  +  +A CM +L + A     +  A RM+TAV
Sbjct:  350 IGQVSDCRELSQSPWLHYPHLELIFLFFAFEGAVTSQMAALRSANSSTILYAAVATLVLYPLLMVVMVARTHRVWVQPDAL--IVFASSE-----TEEALAGKPSTLSRTVSGLKNDFSLFSWADKGQWETVQTANDKARRKADWFRIGFEPLFADFTQAGSWFIIYTLIECAVLASIAVLVDNSAMQFLLFCAMHSLTFVLLVGWKPFANSVLNAVAAMVMLTDAVCMGMLALAAGTFNGTATAARMDTAV 594          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G837_ECTSI1.680e-19189.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCW7_9PHAE7.230e-17589.38VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G1B8_ECTSI9.970e-6292.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN93_ECTSI4.460e-5844.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN89_ECTSI2.700e-5642.91Liver stage antigen 3 n=1 Tax=Ectocarpus siliculos... [more]
D7G1L9_ECTSI6.650e-5645.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD90_9PHAE4.290e-5345.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLG6_ECTSI2.300e-5144.87Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G5F3_ECTSI4.390e-5044.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9C2_9PHAE2.370e-4942.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10053contigE-siliculosus-1a_F_contig10053:5..2283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size927
Model size1054
Exons5
Ec32 orthologEc-00_010630.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.D
EggNOG OGsKOG3544@1,KOG3544@2759
EggNOG free text desc.structural constituent of cuticle
Seed eggNOG ortholog2880.D8LIK9
Seed ortholog evalue6.9e-13
Seed ortholog score81.6
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927510.1955216-UTR-E-siliculosus-1a_F_contig10053:4..1031622927510.1955216-UTR-E-siliculosus-1a_F_contig10053:4..103Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10053 5..103 +
1696318559.446431-UTR-E-siliculosus-1a_F_contig10053:4..1031696318559.446431-UTR-E-siliculosus-1a_F_contig10053:4..103Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10053 5..103 +
1622927510.7813-UTR-E-siliculosus-1a_F_contig10053:2255..22831622927510.7813-UTR-E-siliculosus-1a_F_contig10053:2255..2283Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10053 2256..2283 +
1696318559.5271537-UTR-E-siliculosus-1a_F_contig10053:2255..22831696318559.5271537-UTR-E-siliculosus-1a_F_contig10053:2255..2283Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10053 2256..2283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927510.2091527-CDS-E-siliculosus-1a_F_contig10053:103..3641622927510.2091527-CDS-E-siliculosus-1a_F_contig10053:103..364Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10053 104..364 +
1696318559.4600816-CDS-E-siliculosus-1a_F_contig10053:103..3641696318559.4600816-CDS-E-siliculosus-1a_F_contig10053:103..364Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10053 104..364 +
1622927510.2204483-CDS-E-siliculosus-1a_F_contig10053:840..10061622927510.2204483-CDS-E-siliculosus-1a_F_contig10053:840..1006Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10053 841..1006 +
1696318559.4693904-CDS-E-siliculosus-1a_F_contig10053:840..10061696318559.4693904-CDS-E-siliculosus-1a_F_contig10053:840..1006Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10053 841..1006 +
1622927510.231907-CDS-E-siliculosus-1a_F_contig10053:1224..14001622927510.231907-CDS-E-siliculosus-1a_F_contig10053:1224..1400Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10053 1225..1400 +
1696318559.4869273-CDS-E-siliculosus-1a_F_contig10053:1224..14001696318559.4869273-CDS-E-siliculosus-1a_F_contig10053:1224..1400Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10053 1225..1400 +
1622927510.290379-CDS-E-siliculosus-1a_F_contig10053:1583..17051622927510.290379-CDS-E-siliculosus-1a_F_contig10053:1583..1705Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10053 1584..1705 +
1696318559.5033352-CDS-E-siliculosus-1a_F_contig10053:1583..17051696318559.5033352-CDS-E-siliculosus-1a_F_contig10053:1583..1705Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10053 1584..1705 +
1622927510.7698855-CDS-E-siliculosus-1a_F_contig10053:2053..22551622927510.7698855-CDS-E-siliculosus-1a_F_contig10053:2053..2255Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10053 2054..2255 +
1696318559.5174189-CDS-E-siliculosus-1a_F_contig10053:2053..22551696318559.5174189-CDS-E-siliculosus-1a_F_contig10053:2053..2255Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10053 2054..2255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10053.97.1prot_E-siliculosus-1a_F_contig10053.97.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10053 104..2255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10053.97.1

>prot_E-siliculosus-1a_F_contig10053.97.1 ID=prot_E-siliculosus-1a_F_contig10053.97.1|Name=mRNA_E-siliculosus-1a_F_contig10053.97.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=309bp
MVTTPDGAADDVNDGAEGKRSAGGEEAGDDGLGPVAKCRDRSKSLWIHFP
HVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIAMVVYPVLVLGVMLR
VIFVRVLPPAATGLAFAVTQKDSYYTTNGERGCRGFFSRVRRGLKEDHSA
FAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALV
EAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAAC
RVGVNAFCMILLVGAEAEGDSVHAERMETAVGCFELILLIGRKYKTGSFQ
SVRLHFVL*
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mRNA from alignment at E-siliculosus-1a_F_contig10053:5..2283+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10053.97.1 ID=mRNA_E-siliculosus-1a_F_contig10053.97.1|Name=mRNA_E-siliculosus-1a_F_contig10053.97.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2279bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10053:5..2283+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCTCCTCCGAGCTACGAGCAGGTGGCGATCAAACCGGGCGGTCAAGCCAC ATCGGTGGATGGGCCGCCGCCTCAAGGACTTCCTCCGAGCTACGAGCAGA TGGTGACGACACCGGACGGTGCTGCTGACGACGTCAACGATGGAGCGGAA GGCAAACGTTCTGCCGGGGGAGAAGAAGCTGGAGATGATGGACTGGGGCC GGTAGCCAAGTGCCGGGATCGGTCCAAGTCACTCTGGATTCACTTCCCTC ACGTTGAGCTGTTGTTCATCCTCTACGCGTTCCAGGGGGCCTTGGCGGCG CAGATTGATGTCCTGCGGCACGGCAGCGGCGCCCTCGTACCCGTGGCAGC AATCGCCATGGTGAGAGCGACGCGGACGGTACCCCATACCTTCGTGTTGT GTGATTTTCGCAATCATGCAGCGGGACCGGGAGAACGTGGCAGGCGTTGT GCGTACCAACCGGGAAGATGCGGCCGTGGGCACCCTGACTGAGACGACGT GTACCGTACACACACTGACGATATCGCTCTGAGGAGGAGAACACGGATTA TGGCCACCTAACGAAGCGTTGCAAGCCTAGTCTGGACCGTTGTCCTTTAC CCGAAAGTATGTGAGGTGTGGTTCGTTTGGAGGTGGCATTCACTTTCTGG TTGGGGTAAACAGTGGACCGGAACCTGCAAAACCTGATCTTGGTGCCTGC GACCCTGTCTTAGGTCTAACGATGGGGCGTGGACCCCTCGTTCCTCGAGT GTTTCCTTCTTTCCCGATTCTCTCGCGTTGAGCGGGGTTCTTTGCGCGTC AAACCGGCGTTCCTGCCATGTTTCCTCTCTGTGCAGGTCGTGTACCCGGT CTTGGTGCTCGGGGTGATGCTTCGAGTCATTTTCGTTCGAGTTCTCCCTC CCGCCGCCACGGGGTTGGCCTTCGCTGTGACACAGAAGGACTCCTACTAC ACCACCAATGGCGAAAGGGGCTGCCGAGGCTTCTTCTCGAGAGTTCGGAG AGGTGCGCGACATGGGGCAAAGCACGACCACGACTACACGATGACTACGG CCCTGCACTGCTCAGTTCAAGAACAGAAAACACCATCAACGGATGTACTG TTCGTTTCACGTTTTCCTTCCACTAGACACGAGTCGGGACACACGACAAC ACCGCATTCGCTTCATCGTTGTTACGTCGGTCTGCCCCTCCGTTCGGTCG AACCTCTCCCTTTGCTCCAGGTTTGAAGGAGGATCACAGTGCGTTCGCGT GGGCCAAGAAGGGAGCGTGGAGGACTGTCGAGAATGAAGACACGAAGGAG CAGAGGCTGAGGAACTGGTTCCGCATCGGCTTCGAGCCGCTGTTTGTGGA CTATACCAAGGCTGGATCCTGGTTTGCAGCGTACGCTCTAGTGGAGGTGC GCGCCTGGATAGATTCGTCACGCCCTGGCACATAGCGTAGACCTACGCAC ACAGTAGTTATCGCTGTTCACCTCTGTTAGTCTCTGCCCTTTTAGCGCCG TGCTTGCGTTCTACCGCGAAGTACACGTCGTCCCGTGTGATCCCCGTTCT ACACATACGTGATCCCGCCGTCTTCACAGGCAGCTGTGATAGCGTGCGTC GGAGTGCTGATCGACAACAGCCAGGCGCAACTGCTGATTTTCCTGGGGTT GAATGTGGTGCAGTTCGTTCTTGTGGTGCACCTCACGCCTTTTGCCAACA GGTACGGGCGAGTACGGGGCGGACGATGTTGGGTGCACATGGAAGTCTGT CAACGTGTATGTGTTGAAGCACGGCCGTAGCAAGCAGCCAAACTCATATT GGCCTCCACGGTCGACCCGGAAACCTACGCGAATATGCGTATCGATCCGC GGTAGGTAGCTATTGGGATAGCTTCATGCGCCCACTATCGTAGAACAGGT GTGAGAATTGTATTTATGCAGCCCCTGGGCATGGGCGTCCGTCTGTGAAA CCCGACGATTTTGCGCAGAGTGTACCTCTCTCCAGTCCACCACGAAACCT CGCGCAACGCCATCTCTGATGCATTTGGTATTATTTTCGTTCACGGCAGG GTGGTCGAGTCCATGGCGGCATGCCGGGTGGGTGTCAACGCCTTCTGCAT GATCTTGCTCGTAGGCGCGGAGGCGGAAGGCGACAGCGTGCACGCGGAGA GGATGGAGACGGCCGTCGGATGCTTCGAGCTTATACTGCTGATCGGTAGG AAATACAAGACAGGCAGCTTTCAGTCCGTACGCTTACATTTTGTCCTCTA GACCAGTTCTCCCGCCGATGCTTCTTTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10053:5..2283+

>mRNA_E-siliculosus-1a_F_contig10053.97.1 ID=mRNA_E-siliculosus-1a_F_contig10053.97.1|Name=mRNA_E-siliculosus-1a_F_contig10053.97.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1854bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10053:5..2283+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGACGACACCGGACGGTGCTGCTGACGACGTCAACGATGGAGCGGA
AGGCAAACGTTCTGCCGGGGGAGAAGAAGCTGGAGATGATGGACTGGGGC
CGGTAGCCAAGTGCCGGGATCGGTCCAAGTCACTCTGGATTCACTTCCCT
CACGTTGAGCTGTTGTTCATCCTCTACGCGTTCCAGGGGGCCTTGGCGGC
GCAGATTGATGTCCTGCGGCACGGCAGCGGCGCCCTCGTACCCGTGGCAG
CAATCGCCATGATGGTGACGACACCGGACGGTGCTGCTGACGACGTCAAC
GATGGAGCGGAAGGCAAACGTTCTGCCGGGGGAGAAGAAGCTGGAGATGA
TGGACTGGGGCCGGTAGCCAAGTGCCGGGATCGGTCCAAGTCACTCTGGA
TTCACTTCCCTCACGTTGAGCTGTTGTTCATCCTCTACGCGTTCCAGGGG
GCCTTGGCGGCGCAGATTGATGTCCTGCGGCACGGCAGCGGCGCCCTCGT
ACCCGTGGCAGCAATCGCCATGGTCGTGTACCCGGTCTTGGTGCTCGGGG
TGATGCTTCGAGTCATTTTCGTTCGAGTTCTCCCTCCCGCCGCCACGGGG
TTGGCCTTCGCTGTGACACAGAAGGACTCCTACTACACCACCAATGGCGA
AAGGGGCTGCCGAGGCTTCTTCTCGAGAGTTCGGAGAGGTCGTGTACCCG
GTCTTGGTGCTCGGGGTGATGCTTCGAGTCATTTTCGTTCGAGTTCTCCC
TCCCGCCGCCACGGGGTTGGCCTTCGCTGTGACACAGAAGGACTCCTACT
ACACCACCAATGGCGAAAGGGGCTGCCGAGGCTTCTTCTCGAGAGTTCGG
AGAGGTTTGAAGGAGGATCACAGTGCGTTCGCGTGGGCCAAGAAGGGAGC
GTGGAGGACTGTCGAGAATGAAGACACGAAGGAGCAGAGGCTGAGGAACT
GGTTCCGCATCGGCTTCGAGCCGCTGTTTGTGGACTATACCAAGGCTGGA
TCCTGGTTTGCAGCGTACGCTCTAGTGGAGGTTTGAAGGAGGATCACAGT
GCGTTCGCGTGGGCCAAGAAGGGAGCGTGGAGGACTGTCGAGAATGAAGA
CACGAAGGAGCAGAGGCTGAGGAACTGGTTCCGCATCGGCTTCGAGCCGC
TGTTTGTGGACTATACCAAGGCTGGATCCTGGTTTGCAGCGTACGCTCTA
GTGGAGGCAGCTGTGATAGCGTGCGTCGGAGTGCTGATCGACAACAGCCA
GGCGCAACTGCTGATTTTCCTGGGGTTGAATGTGGTGCAGTTCGTTCTTG
TGGTGCACCTCACGCCTTTTGCCAACAGGCAGCTGTGATAGCGTGCGTCG
GAGTGCTGATCGACAACAGCCAGGCGCAACTGCTGATTTTCCTGGGGTTG
AATGTGGTGCAGTTCGTTCTTGTGGTGCACCTCACGCCTTTTGCCAACAG
GGTGGTCGAGTCCATGGCGGCATGCCGGGTGGGTGTCAACGCCTTCTGCA
TGATCTTGCTCGTAGGCGCGGAGGCGGAAGGCGACAGCGTGCACGCGGAG
AGGATGGAGACGGCCGTCGGATGCTTCGAGCTTATACTGCTGATCGGTAG
GAAATACAAGACAGGCAGCTTTCAGTCCGTACGCTTACATTTTGTCCTCT
AGGGTGGTCGAGTCCATGGCGGCATGCCGGGTGGGTGTCAACGCCTTCTG
CATGATCTTGCTCGTAGGCGCGGAGGCGGAAGGCGACAGCGTGCACGCGG
AGAGGATGGAGACGGCCGTCGGATGCTTCGAGCTTATACTGCTGATCGGT
AGGAAATACAAGACAGGCAGCTTTCAGTCCGTACGCTTACATTTTGTCCT
CTAG
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