mRNA_E-siliculosus-1a_F_contig1139.918.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1139.918.1
Unique NamemRNA_E-siliculosus-1a_F_contig1139.918.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1139.918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1139contigE-siliculosus-1a_F_contig1139:29501..29913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size366
Model size413
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1139.918.1prot_E-siliculosus-1a_F_contig1139.918.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1139 29505..29870 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927649.0977776-UTR-E-siliculosus-1a_F_contig1139:29500..295041622927649.0977776-UTR-E-siliculosus-1a_F_contig1139:29500..29504Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1139 29501..29504 +
1696318624.5471752-UTR-E-siliculosus-1a_F_contig1139:29500..295041696318624.5471752-UTR-E-siliculosus-1a_F_contig1139:29500..29504Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1139 29501..29504 +
1622927649.120518-UTR-E-siliculosus-1a_F_contig1139:29870..299131622927649.120518-UTR-E-siliculosus-1a_F_contig1139:29870..29913Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1139 29871..29913 +
1696318624.573212-UTR-E-siliculosus-1a_F_contig1139:29870..299131696318624.573212-UTR-E-siliculosus-1a_F_contig1139:29870..29913Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1139 29871..29913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927649.1090727-CDS-E-siliculosus-1a_F_contig1139:29504..298701622927649.1090727-CDS-E-siliculosus-1a_F_contig1139:29504..29870Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1139 29505..29870 +
1696318624.5570183-CDS-E-siliculosus-1a_F_contig1139:29504..298701696318624.5570183-CDS-E-siliculosus-1a_F_contig1139:29504..29870Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1139 29505..29870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1139.918.1

>prot_E-siliculosus-1a_F_contig1139.918.1 ID=prot_E-siliculosus-1a_F_contig1139.918.1|Name=mRNA_E-siliculosus-1a_F_contig1139.918.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=122bp
MRPQTGKSSAVTMGRPAQGCNLFCSCVLLFAGNQPGTGFVRAGGGSRQNT
EKWGRACERGERPRLLVNWNKQSVGALGNSSHVLRKSHEHGSSPGDIGEE
CNNSVTLLLLQRGPARKKHLF*
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mRNA from alignment at E-siliculosus-1a_F_contig1139:29501..29913+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1139.918.1 ID=mRNA_E-siliculosus-1a_F_contig1139.918.1|Name=mRNA_E-siliculosus-1a_F_contig1139.918.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=413bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1139:29501..29913+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCATGAGACCCCAGACGGGGAAAAGCAGTGCGGTGACTATGGGGCGAC
CTGCGCAGGGTTGTAATCTGTTTTGTTCATGCGTACTGCTGTTCGCCGGG
AATCAACCGGGCACAGGTTTTGTGAGGGCGGGGGGGGGAAGCAGACAGAA
TACAGAAAAATGGGGGCGTGCGTGCGAGAGGGGAGAGAGACCCCGATTAC
TGGTAAACTGGAACAAACAGTCCGTCGGAGCACTCGGTAATTCAAGCCAT
GTGCTCCGGAAATCTCATGAGCATGGCAGTTCACCTGGAGACATCGGAGA
AGAGTGTAACAACTCCGTGACACTGCTGTTACTACAGCGCGGGCCCGCTC
GTAAGAAGCACCTATTTTGAGCAAGTCTCAAACGCCTGATGTGACTCAAC
GAATATGAACCAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1139:29501..29913+

>mRNA_E-siliculosus-1a_F_contig1139.918.1 ID=mRNA_E-siliculosus-1a_F_contig1139.918.1|Name=mRNA_E-siliculosus-1a_F_contig1139.918.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=732bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1139:29501..29913+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGACCCCAGACGGGGAAAAGCAGTGCGGTGACTATGGGGCGACCTGC
GCAGGGTTGTAATCTGTTTTGTTCATGCGTACTGCTGTTCGCCGGGAATC
AACCGGGCACAGGTTTTGTGAGGGCGGGGGGGGGAAGCAGACAGAATACA
GAAAAATGGGGGCGTGCGTGCGAGAGGGGAGAGAGACCCCGATTACTGGT
AAACTGGAACAAACAGTCCGTCGGAGCACTCGGTAATTCAAGCCATGTGC
TCCGGAAATCTCATGAGCATGGCAGTTCACCTGGAGACATCGGAGAAGAG
TGTAACAACTCCGTGACACTGCTGTTACTACAGCGCGGGCCCGCTCGTAA
GAAGCACCTATTTTGAATGAGACCCCAGACGGGGAAAAGCAGTGCGGTGA
CTATGGGGCGACCTGCGCAGGGTTGTAATCTGTTTTGTTCATGCGTACTG
CTGTTCGCCGGGAATCAACCGGGCACAGGTTTTGTGAGGGCGGGGGGGGG
AAGCAGACAGAATACAGAAAAATGGGGGCGTGCGTGCGAGAGGGGAGAGA
GACCCCGATTACTGGTAAACTGGAACAAACAGTCCGTCGGAGCACTCGGT
AATTCAAGCCATGTGCTCCGGAAATCTCATGAGCATGGCAGTTCACCTGG
AGACATCGGAGAAGAGTGTAACAACTCCGTGACACTGCTGTTACTACAGC
GCGGGCCCGCTCGTAAGAAGCACCTATTTTGA
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