mRNA_E-siliculosus-1a_F_contig11236.824.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11236.824.1
Unique NamemRNA_E-siliculosus-1a_F_contig11236.824.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11236.824.1 vs. uniprot
Match: A0A6H5KTH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTH3_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 6.560e-62
Identity = 111/134 (82.84%), Postives = 118/134 (88.06%), Query Frame = 3 
Query:  189 QPGSSEASAPPLPAPRTTASGVGLMRQDTLSALSCAAWGPGPVGGGIQESWSAMSALSGGKGGGVGVSVGGHVLGWDGSQTGGAGPAAAVSGRXXXXVGSRVPGRGGVPPSLGTGVGALNASGGRGGGRSARTL 590
            QPGS+EASAPPLPAPRTTASGVGLM+QDTLSALSCAAWGPGPVGGGI+ES SA+S LSG +G GVGVSVGG+VLGW GSQ GGAGPAAAVSGR    VG RVP R GV PS GTGVGALNA+GGRGGGR ARTL
Sbjct:   30 QPGSNEASAPPLPAPRTTASGVGLMQQDTLSALSCAAWGPGPVGGGIEESGSAVSTLSGSRGSGVGVSVGGNVLGWGGSQAGGAGPAAAVSGRAKGGVGGRVPVRSGVQPSPGTGVGALNANGGRGGGRPARTL 163
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BLAST of mRNA_E-siliculosus-1a_F_contig11236.824.1 vs. uniprot
Match: A0A6H5JPW5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW5_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 4.800e-52
Identity = 98/127 (77.17%), Postives = 102/127 (80.31%), Query Frame = 3 
Query:  261 MRQDTLSALSCAAWGPGPVGGGIQESWSAMSALSGGKGGGVGVSVGGHVLGWDGSQTGGAGPAAAVSGRXXXXVGSRVPGRGGVPPSLGTGVGALNASGGRGGGRSARTLXXXXXXGADVGGHRPGR 641
            M+QDTLSALSCAAWGPGPVGGGIQES SA+ ALSGG+G GVGVSVGGHVLGW G Q GGAGPAAAVSGR    VG RVP RGGV PS GTGVG LNA+GG GG R ARTL      GA VGGHRPGR
Sbjct:    1 MQQDTLSALSCAAWGPGPVGGGIQESGSAVCALSGGRGSGVGVSVGGHVLGWGGIQAGGAGPAAAVSGRARGGVGGRVPVRGGVQPSPGTGVGTLNANGGSGGCRPARTLSGGRGSGAGVGGHRPGR 127
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BLAST of mRNA_E-siliculosus-1a_F_contig11236.824.1 vs. uniprot
Match: A0A6H5KBV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBV3_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.500e-44
Identity = 90/110 (81.82%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:  261 MRQDTLSALSCAAWGPGPVGGGIQESWSAMSALSGGKGGGVGVSVGGHVLGWDGSQTGGAGPAAAVSGRXXXXVGSRVPGRGGVPPSLGTGVGALNASGGRGGGRSARTL 590
            M+QD LSALSCAAWGPGPVGGGIQES SA+SALSG +G GVGVSVGGHVLGW GSQ GGAGPAAAVSGR    VG RVP RGGV PS GTGVGALNA+GGRG GR ARTL
Sbjct:    1 MQQDRLSALSCAAWGPGPVGGGIQESGSAVSALSGCRGSGVGVSVGGHVLGWGGSQAGGAGPAAAVSGRARGGVGGRVPVRGGVQPSQGTGVGALNANGGRGCGRPARTL 110
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BLAST of mRNA_E-siliculosus-1a_F_contig11236.824.1 vs. uniprot
Match: A0A6H5L7G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G6_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.360e-32
Identity = 78/113 (69.03%), Postives = 83/113 (73.45%), Query Frame = 3 
Query:  261 MRQDTLSALSCAAWGPGPVGGGIQESWSAMSALSGGKGGGVGVSVGGHVLGWDGSQTGGAGPAAAVSGRXXXXVGSRVP---GRGGVPPSLGTGVGALNASGGRGGGRSARTL 590
            M+QDTLSALSCAAWGPGPVGGGIQES SAMSALSGG+G  VGVSVGGHVLGW GSQ GG G +   S R       R     GR    PS G+GV ALNA+GGRGGGR ARTL
Sbjct:    1 MQQDTLSALSCAAWGPGPVGGGIQESGSAMSALSGGRGSSVGVSVGGHVLGWGGSQAGG-GWSRCCSERPQEGWCRRPSPCVGRCATQPSPGSGVCALNANGGRGGGRPARTL 112
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BLAST of mRNA_E-siliculosus-1a_F_contig11236.824.1 vs. uniprot
Match: A0A6H5L044_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L044_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.880e-18
Identity = 51/79 (64.56%), Postives = 53/79 (67.09%), Query Frame = -3 
Query:  355 SECAQICHLLCRRWR*GHQLPFLVRVAHRPAQGLGCRHHLSRGRSLQQRDQPPLFGYRPTQERDRRR*RRHHRLYHRSE 591
            S  A +C LLC RW  GHQLPFLVRVAHR          LSRG SL QRDQPPL GYRP Q+  RRR  RHH LYHRSE
Sbjct:   16 SLSAPVCRLLCHRWHYGHQLPFLVRVAHR----------LSRGHSLVQRDQPPLLGYRPAQDVGRRR--RHH-LYHRSE 81
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11236.824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KTH3_9PHAE6.560e-6282.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPW5_9PHAE4.800e-5277.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBV3_9PHAE1.500e-4481.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7G6_9PHAE1.360e-3269.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L044_9PHAE1.880e-1864.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11236contigE-siliculosus-1a_F_contig11236:1..641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size381
Model size641
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927631.6369822-CDS-E-siliculosus-1a_F_contig11236:0..3811622927631.6369822-CDS-E-siliculosus-1a_F_contig11236:0..381Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11236 1..381 -
1696318618.052926-CDS-E-siliculosus-1a_F_contig11236:0..3811696318618.052926-CDS-E-siliculosus-1a_F_contig11236:0..381Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11236 1..381 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927631.6520529-UTR-E-siliculosus-1a_F_contig11236:381..6411622927631.6520529-UTR-E-siliculosus-1a_F_contig11236:381..641Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11236 382..641 -
1696318618.063225-UTR-E-siliculosus-1a_F_contig11236:381..6411696318618.063225-UTR-E-siliculosus-1a_F_contig11236:381..641Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11236 382..641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11236.824.1prot_E-siliculosus-1a_F_contig11236.824.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11236 1..381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11236.824.1

>prot_E-siliculosus-1a_F_contig11236.824.1 ID=prot_E-siliculosus-1a_F_contig11236.824.1|Name=mRNA_E-siliculosus-1a_F_contig11236.824.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=127bp
MRQDTLSALSCAAWGPGPVGGGIQESWSAMSALSGGKGGGVGVSVGGHVL
GWDGSQTGGAGPAAAVSGRGRGGVGSRVPGRGGVPPSLGTGVGALNASGG
RGGGRSARTLSGGRGSGADVGGHRPGR
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mRNA from alignment at E-siliculosus-1a_F_contig11236:1..641-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11236.824.1 ID=mRNA_E-siliculosus-1a_F_contig11236.824.1|Name=mRNA_E-siliculosus-1a_F_contig11236.824.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=641bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11236:1..641- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AACCACCGTAGCGCCAAACTTGCGTCTAGCACTGCCAATGTAGCACAGCA
GCCAGGATCCAGTGAAGCATCAGCAACTCCTCTGTCTGCTCCAAGAACAA
CAGCGCGCGGTGTGGGACTCGTGCAAGGAGGGGCGGTCAACCACCGTAGC
GCCGAACTTGTGTCTAGCACTGCCAATGCAGCACAGCGCAGCCAGGATCC
AGCGAAGCATCAGCACCTCCTCTGCCTGCTCCAAGAACAACAGCGAGCGG
TGTGGGACTCATGCGGCAGGACACGCTATCTGCTCTATCTTGCGCAGCTT
GGGGTCCAGGTCCTGTGGGGGGTGGTATCCAAGAAAGTTGGTCTGCTATG
AGCGCTCTGAGCGGTGGTAAAGGCGGTGGTGTCGGCGTCAGCGTCGGCGG
TCACGTTCTTGGGTGGGACGGTAGCCAAACAGGGGGGGCTGGTCCCGCTG
CTGCAGTGAGCGGCCGCGGGAGAGGTGGTGTCGGCAGCCGAGTCCCTGGG
CGGGGCGGTGTGCCACCCTCACTAGGAACGGGAGTTGGTGCCCTTAACGC
CAGCGGCGGCAGAGGAGGTGGCAGATCTGCGCGCACTCTGAGCGGTGGTA
GAGGTAGTGGTGCCGATGTCGGCGGTCATCGTCCTGGGCGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11236:1..641-

>mRNA_E-siliculosus-1a_F_contig11236.824.1 ID=mRNA_E-siliculosus-1a_F_contig11236.824.1|Name=mRNA_E-siliculosus-1a_F_contig11236.824.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11236:1..641- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGCAGGACACGCTATCTGCTCTATCTTGCGCAGCTTGGGGTCCAGG
TCCTGTGGGGGGTGGTATCCAAGAAAGTTGGTCTGCTATGAGCGCTCTGA
GCGGTGGTAAAGGCGGTGGTGTCGGCGTCAGCGTCGGCGGTCACGTTCTT
GGGTGGGACGGTAGCCAAACAGGGGGGGCTGGTCCCGCTGCTGCAGTGAG
CGGCCGCGGGAGAGGTGGTGTCGGCAGCCGAGTCCCTGGGCGGGGCGGTG
TGCCACCCTCACTAGGAACGGGAGTTGGTGCCCTTAACGCCAGCGGCGGC
AGAGGAGGTGGCAGATCTGCGCGCACTCTGAGCGGTGGTAGAGGTAGTGG
TGCCGATGTCGGCGGTCATCGTCCTGGGCGGATGCGGCAGGACACGCTAT
CTGCTCTATCTTGCGCAGCTTGGGGTCCAGGTCCTGTGGGGGGTGGTATC
CAAGAAAGTTGGTCTGCTATGAGCGCTCTGAGCGGTGGTAAAGGCGGTGG
TGTCGGCGTCAGCGTCGGCGGTCACGTTCTTGGGTGGGACGGTAGCCAAA
CAGGGGGGGCTGGTCCCGCTGCTGCAGTGAGCGGCCGCGGGAGAGGTGGT
GTCGGCAGCCGAGTCCCTGGGCGGGGCGGTGTGCCACCCTCACTAGGAAC
GGGAGTTGGTGCCCTTAACGCCAGCGGCGGCAGAGGAGGTGGCAGATCTG
CGCGCACTCTGAGCGGTGGTAGAGGTAGTGGTGCCGATGTCGGCGGTCAT
CGTCCTGGGCGG
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