mRNA_E-siliculosus-1a_F_contig1121.811.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1121.811.1
Unique NamemRNA_E-siliculosus-1a_F_contig1121.811.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1121.811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1121contigE-siliculosus-1a_F_contig1121:32546..33092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size279
Model size281
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927627.2186625-CDS-E-siliculosus-1a_F_contig1121:32547..326351622927627.2186625-CDS-E-siliculosus-1a_F_contig1121:32547..32635Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1121 32548..32635 -
1696318616.7201483-CDS-E-siliculosus-1a_F_contig1121:32547..326351696318616.7201483-CDS-E-siliculosus-1a_F_contig1121:32547..32635Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1121 32548..32635 -
1622927627.2321236-CDS-E-siliculosus-1a_F_contig1121:32901..330921622927627.2321236-CDS-E-siliculosus-1a_F_contig1121:32901..33092Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1121 32902..33092 -
1696318616.7391574-CDS-E-siliculosus-1a_F_contig1121:32901..330921696318616.7391574-CDS-E-siliculosus-1a_F_contig1121:32901..33092Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1121 32902..33092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1121.811.1prot_E-siliculosus-1a_F_contig1121.811.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1121 32548..33092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1121.811.1

>prot_E-siliculosus-1a_F_contig1121.811.1 ID=prot_E-siliculosus-1a_F_contig1121.811.1|Name=mRNA_E-siliculosus-1a_F_contig1121.811.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=93bp
QCLKIRDPHYEDDCLAKQHREAVGISSCCCFRSHFFLNNRRRRSAESIYS
LRDTSRTVTRSTRGEHDFREYSHFDCTADKERDGWTLLAARIK
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mRNA from alignment at E-siliculosus-1a_F_contig1121:32546..33092-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1121.811.1 ID=mRNA_E-siliculosus-1a_F_contig1121.811.1|Name=mRNA_E-siliculosus-1a_F_contig1121.811.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=547bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1121:32546..33092- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAATGCCTGAAAATCCGAGATCCCCACTATGAAGATGATTGCCTGGCCAA
GCAGCACCGTGAGGCCGTCGGAATCTCCTCCTGCTGCTGCTTCAGGAGCC
ATTTTTTTCTTAACAACCGAAGGCGTCGGAGCGCAGAGTCGATCTACAGT
TTGAGGGATACGTCTCGGACCGTGACCCGGAGCACACGAGGGTGAGCATG
AAGTGTTGGCTGGCGGTTCGTCTTTGTCGTAACGGTTCGTTCCGTCACGA
CCTTGCGGCCTTTCGCGCTGCATTCTTGTGTCGTGCACACAGTAATACGT
TTCTGATGCAAGTGGGGACAGAATACTGTTTCACGTGAAAGGGGCATTAC
ATATTCCACGTACGAGTAGTCCAGTGGTTAACGTCGCAAACCTATTTGTA
GAAACTTGTGGGTTTCTTTCTCTCTCTGAATGGTTTTATTTCGCTAATAA
CTTGCAGAGAACACGATTTTCGTGAGTATTCGCACTTCGACTGCACGGCC
GACAAGGAAAGGGACGGCTGGACCCTTCTCGCGGCACGAATTAAGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1121:32546..33092-

>mRNA_E-siliculosus-1a_F_contig1121.811.1 ID=mRNA_E-siliculosus-1a_F_contig1121.811.1|Name=mRNA_E-siliculosus-1a_F_contig1121.811.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=558bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1121:32546..33092- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAATGCCTGAAAATCCGAGATCCCCACTATGAAGATGATTGCCTGGCCAA
GCAGCACCGTGAGGCCGTCGGAATCTCCTCCTGCTGCTGCTTCAGGAGCC
ATTTTTTTCTTAACAACCGAAGGCGTCGGAGCGCAGAGTCGATCTACAGT
TTGAGGGATACGTCTCGGACCGTGACCCGGAGCACACGAGGCAATGCCTG
AAAATCCGAGATCCCCACTATGAAGATGATTGCCTGGCCAAGCAGCACCG
TGAGGCCGTCGGAATCTCCTCCTGCTGCTGCTTCAGGAGCCATTTTTTTC
TTAACAACCGAAGGCGTCGGAGCGCAGAGTCGATCTACAGTTTGAGGGAT
ACGTCTCGGACCGTGACCCGGAGCACACGAGGAGAACACGATTTTCGTGA
GTATTCGCACTTCGACTGCACGGCCGACAAGGAAAGGGACGGCTGGACCC
TTCTCGCGGCACGAATTAAGAGAACACGATTTTCGTGAGTATTCGCACTT
CGACTGCACGGCCGACAAGGAAAGGGACGGCTGGACCCTTCTCGCGGCAC
GAATTAAG
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