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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1120.804.1 vs. uniprot
Match: D7FPG3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPG3_ECTSI) HSP 1 Score: 342 bits (878), Expect = 4.130e-115 Identity = 194/213 (91.08%), Postives = 200/213 (93.90%), Query Frame = 1
Query: 13 MASFEEAAVVERATGVVRVKPEQEAA-LGGSSSSRASDQQHERGRACNGGGDNSSQRWTRSHSPLRQLLSSASSSRPGSPKAGNDGLGNGIXXXXXXXXXXGMQPISSLDSAHEEALGVLAGAAANAKPCDIPPSDDIEHAAQHEQRPQQPQQQQRVFVKNVLRPVSYDECHIPSEDGQDDGGDDGNVNPGNVSRPLPATVVSSDPVPSVRQP 648
MASFEEAAVVERATGVVRVKPEQEAA LGGSSSSRA D+QH+RGR CNGGGDNSSQRWTRSHSPLRQLLSSASSSRPGSPK GNDGLGNGI XXXXXXXXXGMQPISSL+SAH+EALGVLAGAAANAKPCDIPPSDDIE A QH+QRP Q+VFVKNVLRPVSYDECHIPSEDGQDDGGDDGNVNPGNVSRPLPATVVSSDPVPSVRQP
Sbjct: 1 MASFEEAAVVERATGVVRVKPEQEAAALGGSSSSRAIDEQHKRGRECNGGGDNSSQRWTRSHSPLRQLLSSASSSRPGSPKVGNDGLGNGIGXXXXXXXXXGMQPISSLESAHDEALGVLAGAAANAKPCDIPPSDDIERATQHKQRPXXXXXXQQVFVKNVLRPVSYDECHIPSEDGQDDGGDDGNVNPGNVSRPLPATVVSSDPVPSVRQP 213
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 642 |
| Model size | 1133 |
| Exons | 2 |
| Ec32 ortholog | Ec-14_004830.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1120.804.1 >prot_E-siliculosus-1a_F_contig1120.804.1 ID=prot_E-siliculosus-1a_F_contig1120.804.1|Name=mRNA_E-siliculosus-1a_F_contig1120.804.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=214bp
MASFEEAAVVERATGVVRVKPEQEAALGGSSSSRASDQQHERGRACNGGG
DNSSQRWTRSHSPLRQLLSSASSSRPGSPKAGNDGLGNGIGGGGGGGSAG
GMQPISSLDSAHEEALGVLAGAAANAKPCDIPPSDDIEHAAQHEQRPQQP
QQQQRVFVKNVLRPVSYDECHIPSEDGQDDGGDDGNVNPGNVSRPLPATV
VSSDPVPSVRQPS* back to topmRNA from alignment at E-siliculosus-1a_F_contig1120:1416..3615+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1120.804.1 ID=mRNA_E-siliculosus-1a_F_contig1120.804.1|Name=mRNA_E-siliculosus-1a_F_contig1120.804.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2200bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1120:1416..3615+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCGGTGCGCCATGGCTAGTTTTGAAGAGGCAGCCGTGGTAGAGAGGGC
CACTGGCGTGGTACGCGTTAAACCCGAGCAAGGTGAAGAAGAAGCAGTAA
ATTCCTTGTAGTTTCCACGTAGTAACGGGGAGTCTTCCACCAGCGCTTTA
CGCCGGTTTCTTGTCATGGTACGTGAGGCCTATCGCTCACAAACAAACGG
CGTTGCATTGTGTATGTCCAGCATTTTTGTGAAGCAACATGACCAAGCTA
ACCCTATCTAGCATCTCTCTGAACTGGTCTTCGTACATGTAGGTTCCCAT
TCGTCGGAAGAAAAATAAGATGACGTGGTATTCAAGGTCGTCTGGACGGA
CTTCGACTTGGGTATCGTTCTGACCCACCTGTTCATACAGGCTCTATTTG
GTTCTCCTGCGCAGTCGTATTCTGCACGACGCATCAACCCCGATACACTG
CTATTAGAGGACCCAGTGTTCAAAACAAAGTCTAGACTAGCAGGCTACAT
TTACTGCCGAACGTATGAGTTCATTTTGATGTGTGTCATTCTCCTGGAAT
ATCCAGGACATTGCACACAGCAGTAGTAGTACGTAATTTCTTGAATTGGC
CAGCAGGGTAGCACGGTCGATGCTTGACAGTTGAAGAATCCCACACACCG
GGTCATCAACAAGAAGGGGGCTAAGAAGCACCGAATGTGTAAATTATTTC
ATTAATTCCAAGGAGCACACAAAAGCCAACCGCAAACCTTCTCGTAAAAA
AAACATGAAAACTTATCGTGTAGACTAGTGCGTTGCAGATACAATGAATA
ATTTCCAGAAGGAAGTTGAAAGGCACCCTACCTCCGAATCATATTATTAC
ACTGGTGGCCAGGGGCAGGTTGGACACCAACTACAACCTCGGGGAGGAGG
TTGGGGGGCCGAGTTAGTCCTTGAGCCCGTTTTTTCTTTAGGCTTGTAGT
CCGCCATGTTGGTCGGAATAGCATCTATCAGAAATGTGGGATAACTTGCA
CACTTTGGGCTTCAACCTCCCTGCAACCCCCCCCCCCCAGGTTGTAGTCG
GTGCCCCAACCTACCCACAACCTGCCTCTGGCCACCAGTGTACGCGATAA
TTAAATGCGCGTGTAAACCGCTTCTTGTTCTATTTCCCGGGAACGACAGA
AGCAGCGCTAGGGGGTTCTTCCTCTTCACGAGCCAGCGACCAGCAGCATG
AGCGAGGAAGAGCATGCAACGGTGGCGGCGACAACTCGTCGCAAAGATGG
ACCAGGTCGCACTCGCCTTTGAGGCAGCTATTGAGTTCCGCGTCAAGTAG
CAGACCTGGTTCCCCGAAGGCCGGCAACGACGGACTTGGAAACGGAATAG
GTGGTGGCGGTGGCGGTGGTTCTGCTGGCGGCATGCAACCCATCTCCTCG
TTAGACTCCGCCCACGAGGAAGCACTGGGGGTGCTGGCAGGAGCAGCGGC
GAACGCAAAGCCTTGTGACATACCGCCGTCTGATGACATTGAACATGCTG
CTCAGCACGAGCAGCGGCCACAGCAACCGCAACAACAGCAGCGAGTCTTC
GTAAAGAACGTGCTCCGTCCCGTGTCGTACGATGAGTGCCACATTCCTTC
GGAAGACGGACAAGACGATGGCGGCGACGATGGCAACGTCAACCCAGGCA
ACGTTTCGCGGCCCCTGCCCGCCACGGTCGTCTCGTCTGACCCAGTTCCC
TCGGTACGACAGCCCAGCTAATATGTCTCTGCAGCTACCCCCGTCGGTGC
CTGGACCGACAACACAACGAGTGTGTGGTAGCAAAGAGAAGCTGATGGTG
GTCATTGTTCACGTGGCGTAGAGGGGTGAAACGGTGAAAGATGAAGCCAG
TCGAAGAGTCAGCGAATCGCGGAAGCGGGGGGTTATAGGCCGATAAACGC
TTCACAGGGGACATTTCGTAGAAAAGGGCATGGGGTTGCGGGAAGGTGAA
GGGTGTGGGAGGCGAAAACATTGGCATTGAATTTTCGCTTTACATAGTAG
AGGTGCGTCATTGTTTCGTTTGGTAGCGCGAGAGGTACTACAGTAGTAGT
AGGGCCGTTGTACTGCAACCGGGTTTTGCAACGCCAACGCTTCTCCCGGA
AATGCATGTATTGTCGTTTCGGAAATTTAGAAACAGAAGAAAGTGTATCA
TCCTAGAATGAGTTAATGTATTAGAGCGCTAATGAGGTTGCTGTTGGTTC
back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1120:1416..3615+ >mRNA_E-siliculosus-1a_F_contig1120.804.1 ID=mRNA_E-siliculosus-1a_F_contig1120.804.1|Name=mRNA_E-siliculosus-1a_F_contig1120.804.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1284bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1120:1416..3615+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTAGTTTTGAAGAGGCAGCCGTGGTAGAGAGGGCCACTGGCGTGGT
ACGCGTTAAACCCGAGCAAGATGGCTAGTTTTGAAGAGGCAGCCGTGGTA
GAGAGGGCCACTGGCGTGGTACGCGTTAAACCCGAGCAAGAAGCAGCGCT
AGGGGGTTCTTCCTCTTCACGAGCCAGCGACCAGCAGCATGAGCGAGGAA
GAGCATGCAACGGTGGCGGCGACAACTCGTCGCAAAGATGGACCAGGTCG
CACTCGCCTTTGAGGCAGCTATTGAGTTCCGCGTCAAGTAGCAGACCTGG
TTCCCCGAAGGCCGGCAACGACGGACTTGGAAACGGAATAGGTGGTGGCG
GTGGCGGTGGTTCTGCTGGCGGCATGCAACCCATCTCCTCGTTAGACTCC
GCCCACGAGGAAGCACTGGGGGTGCTGGCAGGAGCAGCGGCGAACGCAAA
GCCTTGTGACATACCGCCGTCTGATGACATTGAACATGCTGCTCAGCACG
AGCAGCGGCCACAGCAACCGCAACAACAGCAGCGAGTCTTCGTAAAGAAC
GTGCTCCGTCCCGTGTCGTACGATGAGTGCCACATTCCTTCGGAAGACGG
ACAAGACGATGGCGGCGACGATGGCAACGTCAACCCAGGCAACGTTTCGC
GGCCCCTGCCCGCCACGGTCGTCTCGTCTGACCCAGTTCCCTCGGTACGA
CAGCCCAGCTAAAAGCAGCGCTAGGGGGTTCTTCCTCTTCACGAGCCAGC
GACCAGCAGCATGAGCGAGGAAGAGCATGCAACGGTGGCGGCGACAACTC
GTCGCAAAGATGGACCAGGTCGCACTCGCCTTTGAGGCAGCTATTGAGTT
CCGCGTCAAGTAGCAGACCTGGTTCCCCGAAGGCCGGCAACGACGGACTT
GGAAACGGAATAGGTGGTGGCGGTGGCGGTGGTTCTGCTGGCGGCATGCA
ACCCATCTCCTCGTTAGACTCCGCCCACGAGGAAGCACTGGGGGTGCTGG
CAGGAGCAGCGGCGAACGCAAAGCCTTGTGACATACCGCCGTCTGATGAC
ATTGAACATGCTGCTCAGCACGAGCAGCGGCCACAGCAACCGCAACAACA
GCAGCGAGTCTTCGTAAAGAACGTGCTCCGTCCCGTGTCGTACGATGAGT
GCCACATTCCTTCGGAAGACGGACAAGACGATGGCGGCGACGATGGCAAC
GTCAACCCAGGCAACGTTTCGCGGCCCCTGCCCGCCACGGTCGTCTCGTC
TGACCCAGTTCCCTCGGTACGACAGCCCAGCTAA back to top
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