mRNA_E-siliculosus-1a_F_contig1112.759.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1112.759.1
Unique NamemRNA_E-siliculosus-1a_F_contig1112.759.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1112.759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1112contigE-siliculosus-1a_F_contig1112:36616..37253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size378
Model size640
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927617.8607094-UTR-E-siliculosus-1a_F_contig1112:36615..368751622927617.8607094-UTR-E-siliculosus-1a_F_contig1112:36615..36875Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1112 36616..36875 +
1696318612.1836095-UTR-E-siliculosus-1a_F_contig1112:36615..368751696318612.1836095-UTR-E-siliculosus-1a_F_contig1112:36615..36875Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1112 36616..36875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927617.8733659-CDS-E-siliculosus-1a_F_contig1112:36875..372531622927617.8733659-CDS-E-siliculosus-1a_F_contig1112:36875..37253Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1112 36876..37253 +
1696318612.1910663-CDS-E-siliculosus-1a_F_contig1112:36875..372531696318612.1910663-CDS-E-siliculosus-1a_F_contig1112:36875..37253Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1112 36876..37253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1112.759.1prot_E-siliculosus-1a_F_contig1112.759.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1112 36876..37253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1112.759.1

>prot_E-siliculosus-1a_F_contig1112.759.1 ID=prot_E-siliculosus-1a_F_contig1112.759.1|Name=mRNA_E-siliculosus-1a_F_contig1112.759.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=126bp
MQGLVSVATCLFARETRSQYKRFQRTFQGQASTRNQPWMIVPPYLFFAAF
RLFHGVDIEILQPTCSVGLFYMYYLVRLISRSDLPHVPNDTIIVGLPLPS
FHQYLETFYATKGTGSAHENQSRNTS
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mRNA from alignment at E-siliculosus-1a_F_contig1112:36616..37253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1112.759.1 ID=mRNA_E-siliculosus-1a_F_contig1112.759.1|Name=mRNA_E-siliculosus-1a_F_contig1112.759.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=638bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1112:36616..37253+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGTATGCCGCGGATTGCTCATGATCGAAGGTCTGCTGTAGGTTCGTGAG
TCCAAGTTCTTTTTGGATCGTGTTATACGAACCAAGAGGTTTGAAATGGT
GTGTGAAGACATGCTCACCCCCGTCGTAAATTGTGTTCTGTTGATTTGAT
GTCTCCCGCATCGAACCCTGTACGGGTTAGCACGTCCGAAACCCGTGCGT
TCTGTCAAGCTGTCGTGTGGGTTTCGTCGGCATGCTGTACTGTACTGGAC
GTGGACGTTGATGCAAGGGCTTGTTTCGGTGGCCACATGCCTATTCGCAC
GCGAAACGCGCTCTCAGTACAAACGCTTTCAACGAACGTTTCAAGGTCAG
GCGTCGACCCGCAACCAACCTTGGATGATTGTGCCCCCGTACTTATTTTT
TGCCGCGTTTCGTTTGTTTCACGGCGTAGATATAGAGATACTGCAGCCTA
CATGCAGCGTCGGCCTCTTCTACATGTACTATTTAGTGAGACTGATCTCT
CGGTCTGATCTTCCTCACGTTCCAAACGATACGATCATTGTGGGGCTCCC
CCTCCCCTCCTTCCACCAGTACCTGGAAACCTTCTACGCGACCAAGGGGA
CGGGCTCGGCACACGAGAATCAGTCGCGAAACACCTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1112:36616..37253+

>mRNA_E-siliculosus-1a_F_contig1112.759.1 ID=mRNA_E-siliculosus-1a_F_contig1112.759.1|Name=mRNA_E-siliculosus-1a_F_contig1112.759.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=756bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1112:36616..37253+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAAGGGCTTGTTTCGGTGGCCACATGCCTATTCGCACGCGAAACGCG
CTCTCAGTACAAACGCTTTCAACGAACGTTTCAAGGTCAGGCGTCGACCC
GCAACCAACCTTGGATGATTGTGCCCCCGTACTTATTTTTTGCCGCGTTT
CGTTTGTTTCACGGCGTAGATATAGAGATACTGCAGCCTACATGCAGCGT
CGGCCTCTTCTACATGTACTATTTAGTGAGACTGATCTCTCGGTCTGATC
TTCCTCACGTTCCAAACGATACGATCATTGTGGGGCTCCCCCTCCCCTCC
TTCCACCAGTACCTGGAAACCTTCTACGCGACCAAGGGGACGGGCTCGGC
ACACGAGAATCAGTCGCGAAACACCTCGATGCAAGGGCTTGTTTCGGTGG
CCACATGCCTATTCGCACGCGAAACGCGCTCTCAGTACAAACGCTTTCAA
CGAACGTTTCAAGGTCAGGCGTCGACCCGCAACCAACCTTGGATGATTGT
GCCCCCGTACTTATTTTTTGCCGCGTTTCGTTTGTTTCACGGCGTAGATA
TAGAGATACTGCAGCCTACATGCAGCGTCGGCCTCTTCTACATGTACTAT
TTAGTGAGACTGATCTCTCGGTCTGATCTTCCTCACGTTCCAAACGATAC
GATCATTGTGGGGCTCCCCCTCCCCTCCTTCCACCAGTACCTGGAAACCT
TCTACGCGACCAAGGGGACGGGCTCGGCACACGAGAATCAGTCGCGAAAC
ACCTCG
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