mRNA_E-siliculosus-1a_F_contig11113.755.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11113.755.1
Unique NamemRNA_E-siliculosus-1a_F_contig11113.755.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11113.755.1 vs. uniprot
Match: D8LL33_ECTSI (Protein-serine/threonine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL33_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 3.470e-19
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 EHPLPPLAGFGMGLPLSRVYARYFGGDVLLKSMEGFGMDR 120
            EHPLPPLAGFGMGLPLSRVYARYFGGDVLLKSMEGFGMDR
Sbjct:  375 EHPLPPLAGFGMGLPLSRVYARYFGGDVLLKSMEGFGMDR 414          
BLAST of mRNA_E-siliculosus-1a_F_contig11113.755.1 vs. uniprot
Match: A0A6H5K447_9PHAE (Protein-serine/threonine kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K447_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.580e-18
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1
Query:    1 EHPLPPLAGFGMGLPLSRVYARYFGGDVLLKSMEGFGMD 117
            EHPLPPLAGFGMGLPLSRVYARYFGGDVLLKSMEGFGMD
Sbjct:  442 EHPLPPLAGFGMGLPLSRVYARYFGGDVLLKSMEGFGMD 480          
BLAST of mRNA_E-siliculosus-1a_F_contig11113.755.1 vs. uniprot
Match: A0A0K6G5F8_9AGAM (Protein-serine/threonine kinase n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6G5F8_9AGAM)

HSP 1 Score: 60.8 bits (146), Expect = 2.580e-11
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1
Query:   16 PLAGFGMGLPLSRVYARYFGGDVLLKSMEGFGMD 117
            P+AGFG GLPLSR+YARYFGGDV L SMEG+G D
Sbjct:   18 PMAGFGYGLPLSRLYARYFGGDVRLISMEGYGTD 51          
BLAST of mRNA_E-siliculosus-1a_F_contig11113.755.1 vs. uniprot
Match: A0A1C7LKN8_GRIFR (Protein-serine/threonine kinase n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7LKN8_GRIFR)

HSP 1 Score: 59.7 bits (143), Expect = 8.140e-11
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1
Query:   16 PLAGFGMGLPLSRVYARYFGGDVLLKSMEGFGMD 117
            P+AGFG GLPLSR+YARYFGGD+ L SM+GFG D
Sbjct:   22 PMAGFGYGLPLSRLYARYFGGDLRLISMDGFGTD 55          
BLAST of mRNA_E-siliculosus-1a_F_contig11113.755.1 vs. uniprot
Match: W7TRD2_9STRA (Protein-serine/threonine kinase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRD2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 8.750e-11
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1
Query:   13 PPLAGFGMGLPLSRVYARYFGGDVLLKSMEGFGMD 117
            P LAG GMGLPLSR+YARYFGGD+ +KS+EGFGMD
Sbjct:  410 PVLAGHGMGLPLSRIYARYFGGDLEVKSLEGFGMD 444          
BLAST of mRNA_E-siliculosus-1a_F_contig11113.755.1 vs. uniprot
Match: A0A7J7IGH4_9RHOD (Protein-serine/threonine kinase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IGH4_9RHOD)

HSP 1 Score: 60.5 bits (145), Expect = 1.570e-10
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   10 LPPLAGFGMGLPLSRVYARYFGGDVLLKSMEGFGMD 117
            + PLAGFG GLPLSR+YARYFGG++ + SMEGFG D
Sbjct:   78 MDPLAGFGYGLPLSRLYARYFGGELSIASMEGFGTD 113          
BLAST of mRNA_E-siliculosus-1a_F_contig11113.755.1 vs. uniprot
Match: A0A367J5I8_RHIST (Protein-serine/threonine kinase (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367J5I8_RHIST)

HSP 1 Score: 58.9 bits (141), Expect = 1.640e-10
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1
Query:   16 PLAGFGMGLPLSRVYARYFGGDVLLKSMEGFGMD 117
            P+AGFG GLP+SR+YARYFGGD+ L SMEG+G D
Sbjct:   21 PMAGFGYGLPISRLYARYFGGDLKLISMEGYGTD 54          
BLAST of mRNA_E-siliculosus-1a_F_contig11113.755.1 vs. uniprot
Match: A0A286UDV9_9AGAM (Protein-serine/threonine kinase n=1 Tax=Pyrrhoderma noxium TaxID=2282107 RepID=A0A286UDV9_9AGAM)

HSP 1 Score: 59.7 bits (143), Expect = 2.070e-10
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1
Query:   16 PLAGFGMGLPLSRVYARYFGGDVLLKSMEGFGMD 117
            P+AGFG GLPLSR+YARYFGGD+ L SMEG+G D
Sbjct:   61 PMAGFGYGLPLSRLYARYFGGDLKLISMEGYGTD 94          
BLAST of mRNA_E-siliculosus-1a_F_contig11113.755.1 vs. uniprot
Match: A0A0S7JZN1_9TELE (Protein-serine/threonine kinase n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JZN1_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 2.440e-10
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query:    1 EHPLPPLAGFGMGLPLSRVYARYFGGDVLLKSMEGFGMD 117
            +H   PLAGFG GLP+SR+YA+YF GD+ L SMEGFG D
Sbjct:   12 DHSSAPLAGFGYGLPISRLYAKYFQGDLQLYSMEGFGTD 50          
BLAST of mRNA_E-siliculosus-1a_F_contig11113.755.1 vs. uniprot
Match: UPI0007ACC5E6 (pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 1, mitochondrial n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007ACC5E6)

HSP 1 Score: 58.9 bits (141), Expect = 2.800e-10
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1
Query:   16 PLAGFGMGLPLSRVYARYFGGDVLLKSMEGFGMD 117
            PLAGFG GLP+SR+YARYF GD+ L SMEGFG+D
Sbjct:    8 PLAGFGYGLPISRLYARYFQGDLKLYSMEGFGID 41          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11113.755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL33_ECTSI3.470e-19100.00Protein-serine/threonine kinase n=1 Tax=Ectocarpus... [more]
A0A6H5K447_9PHAE1.580e-18100.00Protein-serine/threonine kinase n=1 Tax=Ectocarpus... [more]
A0A0K6G5F8_9AGAM2.580e-1179.41Protein-serine/threonine kinase n=1 Tax=Rhizoctoni... [more]
A0A1C7LKN8_GRIFR8.140e-1176.47Protein-serine/threonine kinase n=1 Tax=Grifola fr... [more]
W7TRD2_9STRA8.750e-1180.00Protein-serine/threonine kinase n=3 Tax=Monodopsid... [more]
A0A7J7IGH4_9RHOD1.570e-1072.22Protein-serine/threonine kinase n=1 Tax=Cyanidioco... [more]
A0A367J5I8_RHIST1.640e-1073.53Protein-serine/threonine kinase (Fragment) n=1 Tax... [more]
A0A286UDV9_9AGAM2.070e-1076.47Protein-serine/threonine kinase n=1 Tax=Pyrrhoderm... [more]
A0A0S7JZN1_9TELE2.440e-1066.67Protein-serine/threonine kinase n=2 Tax=Poeciliops... [more]
UPI0007ACC5E62.800e-1076.47pyruvate dehydrogenase (acetyl-transferring) kinas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11113contigE-siliculosus-1a_F_contig11113:1803..1925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size123
Model size123
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko01000,ko01001,ko01002,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.T
EC2.7.11.2
EggNOG OGsCOG0642@1,KOG0787@2759
EggNOG free text desc.pyruvate dehydrogenase (acetyl-transferring) kinase activity
KEGG koko:K00898,ko:K08776,ko:K17915
Seed eggNOG ortholog2880.D8LL33
Seed ortholog evalue2.6e-16
Seed ortholog score90.1
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927617.6387568-CDS-E-siliculosus-1a_F_contig11113:1802..19251622927617.6387568-CDS-E-siliculosus-1a_F_contig11113:1802..1925Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11113 1803..1925 -
1696318612.108055-CDS-E-siliculosus-1a_F_contig11113:1802..19251696318612.108055-CDS-E-siliculosus-1a_F_contig11113:1802..1925Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11113 1803..1925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11113.755.1prot_E-siliculosus-1a_F_contig11113.755.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11113 1803..1925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11113.755.1

>prot_E-siliculosus-1a_F_contig11113.755.1 ID=prot_E-siliculosus-1a_F_contig11113.755.1|Name=mRNA_E-siliculosus-1a_F_contig11113.755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=41bp
EHPLPPLAGFGMGLPLSRVYARYFGGDVLLKSMEGFGMDR*
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mRNA from alignment at E-siliculosus-1a_F_contig11113:1803..1925-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11113.755.1 ID=mRNA_E-siliculosus-1a_F_contig11113.755.1|Name=mRNA_E-siliculosus-1a_F_contig11113.755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=123bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11113:1803..1925- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGCATCCCTTGCCGCCTCTGGCTGGGTTCGGCATGGGTCTGCCGCTGAG CCGGGTGTACGCCCGTTATTTCGGCGGGGACGTGCTTCTCAAGAGCATGG AAGGCTTCGGGATGGACAGGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11113:1803..1925-

>mRNA_E-siliculosus-1a_F_contig11113.755.1 ID=mRNA_E-siliculosus-1a_F_contig11113.755.1|Name=mRNA_E-siliculosus-1a_F_contig11113.755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=246bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11113:1803..1925- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGCATCCCTTGCCGCCTCTGGCTGGGTTCGGCATGGGTCTGCCGCTGAG
CCGGGTGTACGCCCGTTATTTCGGCGGGGACGTGCTTCTCAAGAGCATGG
AAGGCTTCGGGATGGACAGGTAAGAGCATCCCTTGCCGCCTCTGGCTGGG
TTCGGCATGGGTCTGCCGCTGAGCCGGGTGTACGCCCGTTATTTCGGCGG
GGACGTGCTTCTCAAGAGCATGGAAGGCTTCGGGATGGACAGGTAA
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