mRNA_E-siliculosus-1a_F_contig1111.753.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1111.753.1
Unique NamemRNA_E-siliculosus-1a_F_contig1111.753.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A6H5KLT5_9PHAE (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLT5_9PHAE)

HSP 1 Score: 482 bits (1240), Expect = 1.190e-170
Identity = 256/282 (90.78%), Postives = 258/282 (91.49%), Query Frame = 1 
Query:   43 MMALMRLLACLSLCLVAVDGYNARVPTMSGGNGGAQPRGRFIAKAACAAASLTGLVVTAPFIVGSDSADGVAAVAAETARNVAVAPALAEEESGSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR-------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSATSVPRPAEGDY 849
            MMA MR+LA LSLCLV VDGYNA+VPTMSGGNGG QPRGRFIAKAACAAASLTGL V APFIVGSDSADGVAAVAAETARNVAVAPALAEE  GSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGD  FLDKSGFSPIGR             GYGEGAPQGNGPNQ KIQSQGNAYLKGSFPKLSYIKSATSVPRPAEGDY
Sbjct:    1 MMAPMRVLAGLSLCLVIVDGYNAKVPTMSGGNGGTQPRGRFIAKAACAAASLTGLAVAAPFIVGSDSADGVAAVAAETARNVAVAPALAEEALGSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKSATSVPRPAEGDY 282
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A835YRY8_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRY8_9STRA)

HSP 1 Score: 221 bits (564), Expect = 2.170e-68
Identity = 121/203 (59.61%), Postives = 143/203 (70.44%), Query Frame = 1 
Query:  256 AAVAAETARNVAVAPALAEEESGSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR-------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSATSV 825
            AAV A     VA AP  A  E   K   V+F V+L+  + G+FV++V PDWAP GAARF  L  + FF D RFFRVLKGFVAQFGI+GDP V AK+R + ++DDPVTQSNKRGTVVFAT+G N+RT+QLFINFGD AFLDK GFSPIG               YGEGAP+G GP+Q+ IQS+GNAYLK  FP LSYI +A  +
Sbjct:   54 AAVGAAAGVGVAAAPKGAFAEGDPK---VQFQVELAPGKQGTFVMQVHPDWAPKGAARFLELVDSDFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASAIRDDPVTQSNKRGTVVFATAGANTRTSQLFINFGDNAFLDKMGFSPIGEIVEGMDTVDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNAKRI 253
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A7S2RJE7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJE7_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.750e-66
Identity = 115/190 (60.53%), Postives = 134/190 (70.53%), Query Frame = 1 
Query:  295 APALAEEESGSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR-------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSATSV 825
            AP LAE+   + P  V F VQLS EE G   ++V PDW+P GA RF  L +AGF+ DCRFFRVL GFVAQFGINGDPAV +++RG  ++DDPVT +N RGT+ FAT G NSRTTQ+FINF D  FLD+SGFSP                GYGEGAP GNGPNQ  IQS+GNAYL  S+PKLS+IKSA  V
Sbjct:   97 APGLAED--AAAPFDVLFTVQLSPEEEGQVGLKVHPDWSPRGAQRFRELVEAGFYNDCRFFRVLPGFVAQFGINGDPAVMSQWRGRNLRDDPVTVTNSRGTLSFATGGPNSRTTQVFINFKDNKFLDRSGFSPFAEVTSGMDIVEKLYSGYGEGAPNGNGPNQGLIQSKGNAYLSASYPKLSFIKSAKVV 284
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A7S3YYD7_9EUKA (Peptidylprolyl isomerase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YYD7_9EUKA)

HSP 1 Score: 209 bits (533), Expect = 8.850e-63
Identity = 132/262 (50.38%), Postives = 161/262 (61.45%), Query Frame = 1 
Query:  136 NGGAQ-----PRGRF-----IAKAACAAASLTGLVVT-----------APFIVGSDSADGVAAVAAETARNVAVAPALAEEESGSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR--------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSA 816
            NGG Q     P GR       AKA  +AA   G V T           +P +   D A GV   A   A       A AEE SG   + V+F+VQL+ +++  FV+EV P+WAPLGA +F  L   GF+ DCRFFRV++GFV Q+GINGDP V  KY+  + QDDPV  SNKRGT+ FATSGKNSRTTQLFINFGD  FLD+ GFSPIG+               YGEGAP G+GP+Q +IQ  GNAYL+ ++PKLSYIK+A
Sbjct:   66 NGGVQGSMAKPAGRISTKISAAKAFASAAKAEGTVATRASKSDKLGGDSPVVSRRDVAVGVPVGAGLAA---VAGKAKAEEGSGGVFN-VEFEVQLTADKTDKFVIEVHPEWAPLGAEQFKKLVTDGFYNDCRFFRVVEGFVVQWGINGDPDVNKKYKKPI-QDDPVKTSNKRGTLTFATSGKNSRTTQLFINFGDNTFLDRLGFSPIGKVAGDGMKVVDSIYDRYGEGAPNGSGPDQGRIQRSGNAYLEKNYPKLSYIKTA 322
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A7S3YYN4_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YYN4_9EUKA)

HSP 1 Score: 204 bits (518), Expect = 1.860e-62
Identity = 102/169 (60.36%), Postives = 125/169 (73.96%), Query Frame = 1 
Query:  352 VQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR--------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSA 816
            VQL+ +++  FV+EV P+WAPLGA +F  L   GF+ DCRFFRV++GFV Q+GINGDP V  KY+  + QDDPV  SNKRGT+ FATSGKNSRTTQLFINFGD  FLD+ GFSPIG+               YGEGAP G+GP+Q +IQ  GNAYL+ ++PKLSYIK+A
Sbjct:   10 VQLTADKTDKFVIEVHPEWAPLGAEQFKKLVTDGFYNDCRFFRVVEGFVVQWGINGDPDVNKKYKKPI-QDDPVKTSNKRGTLTFATSGKNSRTTQLFINFGDNTFLDRLGFSPIGKVAGDGMKVVDSIYDRYGEGAPNGSGPDQGRIQRSGNAYLEKNYPKLSYIKTA 177
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A7S2TLE1_9EUKA (Peptidylprolyl isomerase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TLE1_9EUKA)

HSP 1 Score: 208 bits (530), Expect = 1.930e-62
Identity = 108/190 (56.84%), Postives = 136/190 (71.58%), Query Frame = 1 
Query:  289 AVAPALAEEESGSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR--------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSA 816
            AVA  +  EE       V+F+VQL+ +++  FV+EV P+WAP GA +F  L   GF++DCRFFRV++GFV Q+GINGDP V  KY+ A+ QDDPV  SN+RGT+ FATSGKNSRTTQLFINFGD  FLD+ GFSPIG+               YGEGAP G+GP+Q +IQ  GNAYL+ ++PKLSYIK+A
Sbjct:  125 AVAGKVKAEEGSGGIFNVEFEVQLTADKTDKFVIEVHPEWAPHGAEQFKKLVNDGFYDDCRFFRVVEGFVVQWGINGDPEVNKKYKKAI-QDDPVKTSNERGTLTFATSGKNSRTTQLFINFGDNTFLDRLGFSPIGKVVGDGMKIVDSIYDRYGEGAPNGSGPDQGRIQRSGNAYLEKNYPKLSYIKTA 313
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A7S2CBJ7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CBJ7_9STRA)

HSP 1 Score: 206 bits (525), Expect = 2.620e-62
Identity = 103/173 (59.54%), Postives = 121/173 (69.94%), Query Frame = 1 
Query:  340 VKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR-------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSAT 819
            V FD+   D   G+ V+EV P+WAPLGA RF  L   G F++ RFFRVL GF+AQFGI+GDPAV AK+RG  ++DDPV  SNKRGT+ FAT G N+RT+Q+F N+GD  FLD+ GFSP G              GYGEGAP G GPNQ KIQ  GNAYLK SFPKLSYIK A+
Sbjct:   95 VTFDIVNEDGTGGAVVIEVHPEWAPLGAERFKELVSTGTFDENRFFRVLPGFIAQFGISGDPAVSAKWRGQNLRDDPVKVSNKRGTLTFATGGPNTRTSQIFFNYGDNQFLDRQGFSPFGTVKSGMDIVEKLYSGYGEGAPSGKGPNQGKIQKDGNAYLKESFPKLSYIKKAS 267
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A7S2XWI2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWI2_9STRA)

HSP 1 Score: 201 bits (511), Expect = 5.750e-61
Identity = 103/179 (57.54%), Postives = 123/179 (68.72%), Query Frame = 1 
Query:  337 YVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR-------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSATSVPRP 834
            YVKFDVQLSD ++GSFV+EV P WAP GA RF  L    FF  CRFFRV+K FVAQFGI+G+P VQ+++R   ++DDPVTQ N +G++ FATSG +SRTTQLF N  D  FLD  GFSP  R             GYGEGAP G+GP+Q+ IQ +GN YL  +FP LSYI S T V  P
Sbjct:   30 YVKFDVQLSDHDTGSFVLEVNPSWAPNGAQRFKELLDDDFFAGCRFFRVIKDFVAQFGIHGNPGVQSQWRDQKIKDDPVTQKNYKGSLTFATSGPDSRTTQLFFNLKDNFFLDSMGFSPFARVVIGQETVDALYSGYGEGAPSGSGPSQALIQQKGNTYLTANFPDLSYIISTTIVDYP 208
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A7S1C2E0_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C2E0_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.440e-59
Identity = 101/163 (61.96%), Postives = 120/163 (73.62%), Query Frame = 1 
Query:  373 SGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDK-AFLDKSGFSPIGR-------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSAT 819
            +G+FVV++RPDWAP+GAARFT L++ GF+ D RFFRV+ GF+AQFGIN DPAVQA +R   ++DDPV  SN RGT+VFATSG NSRTTQLFIN+ D+  FLDKSGFSP G              GYGEGAP G GP+Q  IQ +GN YLK  +P LSYI  AT
Sbjct:  136 TGTFVVKLRPDWAPIGAARFTELTEQGFWNDIRFFRVIPGFIAQFGINADPAVQATWRNKSLRDDPVKVSNTRGTLVFATSGPNSRTTQLFINYSDRNTFLDKSGFSPFGEVISGMDVVDKLYGGYGEGAPSGKGPSQGLIQVKGNEYLKSQYPLLSYISKAT 298
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Match: A0A517QVD7_9PLAN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QVD7_9PLAN)

HSP 1 Score: 195 bits (496), Expect = 3.240e-59
Identity = 96/175 (54.86%), Postives = 120/175 (68.57%), Query Frame = 1 
Query:  340 VKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGR-------------GYGEGAPQGNGPNQSKIQSQGNAYLKGSFPKLSYIKSATSV 825
            VKF+        G F VEV P+WAPLGAA+F  + + G F + RFFRV++GF+ QFGI GDPAV AK+R   ++DDP TQSN RG + FAT+G N+RT+Q+FINFGD +FLD  GF+P G+             GYGEGAPQG GP Q ++QS+GN YLK  FP+L YIK AT V
Sbjct:    4 VKFETS-----KGDFTVEVHPEWAPLGAAQFKEIVEDGVFNEARFFRVIEGFMVQFGIAGDPAVSAKWRNKQIKDDPTTQSNTRGMITFATAGPNTRTSQVFINFGDNSFLDNQGFAPFGKVTEGMEVVDALYAGYGEGAPQGRGPGQGQVQSKGNEYLKADFPELDYIKQATVV 173
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1111.753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLT5_9PHAE1.190e-17090.78Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YRY8_9STRA2.170e-6859.61Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A7S2RJE7_9STRA1.750e-6660.53Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizoc... [more]
A0A7S3YYD7_9EUKA8.850e-6350.38Peptidylprolyl isomerase n=1 Tax=Lotharella globos... [more]
A0A7S3YYN4_9EUKA1.860e-6260.36Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lothar... [more]
A0A7S2TLE1_9EUKA1.930e-6256.84Peptidylprolyl isomerase n=1 Tax=Lotharella oceani... [more]
A0A7S2CBJ7_9STRA2.620e-6259.54Peptidyl-prolyl cis-trans isomerase n=1 Tax=Floren... [more]
A0A7S2XWI2_9STRA5.750e-6157.54Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1C2E0_9STRA2.440e-5961.96Peptidyl-prolyl cis-trans isomerase n=1 Tax=Coreth... [more]
A0A517QVD7_9PLAN3.240e-5954.86Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1111contigE-siliculosus-1a_F_contig1111:26682..32649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size852
Model size853
Exons5
Ec32 orthologEc-09_001710.1
Ec32 ortholog descriptionPeptidyl-prolyl cis-trans isomerase, cyclophilin type
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EggNOG OGs2S3DM@2759,COG0652@1
EggNOG free text desc.Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Seed eggNOG ortholog2880.D8LSI0
Seed ortholog evalue9.7e-139
Seed ortholog score499.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1111.753.1prot_E-siliculosus-1a_F_contig1111.753.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1111 26682..32649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927617.4547937-CDS-E-siliculosus-1a_F_contig1111:26681..268311622927617.4547937-CDS-E-siliculosus-1a_F_contig1111:26681..26831Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1111 26682..26831 -
1696318612.0236254-CDS-E-siliculosus-1a_F_contig1111:26681..268311696318612.0236254-CDS-E-siliculosus-1a_F_contig1111:26681..26831Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1111 26682..26831 -
1622927617.4746401-CDS-E-siliculosus-1a_F_contig1111:27399..274621622927617.4746401-CDS-E-siliculosus-1a_F_contig1111:27399..27462Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1111 27400..27462 -
1696318612.03513-CDS-E-siliculosus-1a_F_contig1111:27399..274621696318612.03513-CDS-E-siliculosus-1a_F_contig1111:27399..27462Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1111 27400..27462 -
1622927617.4868708-CDS-E-siliculosus-1a_F_contig1111:28016..282521622927617.4868708-CDS-E-siliculosus-1a_F_contig1111:28016..28252Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1111 28017..28252 -
1696318612.045545-CDS-E-siliculosus-1a_F_contig1111:28016..282521696318612.045545-CDS-E-siliculosus-1a_F_contig1111:28016..28252Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1111 28017..28252 -
1622927617.4995916-CDS-E-siliculosus-1a_F_contig1111:30206..304791622927617.4995916-CDS-E-siliculosus-1a_F_contig1111:30206..30479Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1111 30207..30479 -
1696318612.0565686-CDS-E-siliculosus-1a_F_contig1111:30206..304791696318612.0565686-CDS-E-siliculosus-1a_F_contig1111:30206..30479Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1111 30207..30479 -
1622927617.5116587-CDS-E-siliculosus-1a_F_contig1111:32519..326491622927617.5116587-CDS-E-siliculosus-1a_F_contig1111:32519..32649Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1111 32520..32649 -
1696318612.0642526-CDS-E-siliculosus-1a_F_contig1111:32519..326491696318612.0642526-CDS-E-siliculosus-1a_F_contig1111:32519..32649Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1111 32520..32649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1111.753.1

>prot_E-siliculosus-1a_F_contig1111.753.1 ID=prot_E-siliculosus-1a_F_contig1111.753.1|Name=mRNA_E-siliculosus-1a_F_contig1111.753.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=284bp
PASLLLLCTPTPNTMMALMRLLACLSLCLVAVDGYNARVPTMSGGNGGAQ
PRGRFIAKAACAAASLTGLVVTAPFIVGSDSADGVAAVAAETARNVAVAP
ALAEEESGSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKA
GFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTV
VFATSGKNSRTTQLFINFGDKAFLDKSGFSPIGRGYGEGAPQGNGPNQSK
IQSQGNAYLKGSFPKLSYIKSATSVPRPAEGDY*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1111:26682..32649-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1111.753.1 ID=mRNA_E-siliculosus-1a_F_contig1111.753.1|Name=mRNA_E-siliculosus-1a_F_contig1111.753.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5968bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1111:26682..32649- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCGCCAGCCTGCTGCTGCTGTGCACGCCCACACCCAACACGATGATGGC
GCTGATGCGACTACTAGCTTGCCTTTCTCTGTGTCTCGTGGCCGTCGATG
GCTACAACGCAAGAGTACCCACCATGTCAGGTGAATAGCATAGATGCTGG
AGAACGCGGAAACATGTGCTTCATACCTTGAAGGCTCTTGCTGTGTGTCG
CACCCGACACTCAGCACCATAACCACTGTCGCCGCAATCTGTAGGAGAAA
CCAAAGAAATGTAGTCTTCAACGTCAACTTGGCGTCTTGTGCATTCCCAC
GGCTGTTGCCCCCCATGGGAAGATTGCCGCAATTCAGGACCGCCGTGGCG
GGACAGGAAGGTACCGCAGATGACGCAAGATATCACACCTCCTGGACAGA
TTTTCATAGCTCGAGTTTGTAAACACCAGCAAGATTTTTTTTTTTAGTTT
ATTTGTGATGTGAGTCCCTGGTGTAGCTGTACCTACGTCCTACCCCTCGA
GGTCCCCTGTCCAACTGTTCCTCCGCTCGTCTGCGGATCTTCTGTGCGGT
CCGCGCGCACCCGTATGTCACTGTATGCACATGCCCGCGTACCACATATA
TATCCTCAACCGCCTAGATGGTTGTTTGTCGTCTCACGCCCGGGGAGAGT
CCCCGGTAGCGTGTCAGTGCTGTACCACGTCAGCACGCCAGCTCAGACTG
TGTCTGTGTCACCACCTAGTCAGGCTGGTTCTGCGTCATCAGCGCTGTCG
AACGCTGTGCTGTGCACACCCCTCTTCACCCTTCCTCTGTCACTCTTCTT
CTTTCCCTCTCTTCCCAGAGACCACACCGTTGGCTCTTCCTAGAGAACTA
CTCCTGTCCCGCAAGTCTGTACACTAGCGGTCCCCCACCGTCGCTCCGGA
AGTCTCTTCCGGTCGCACAGTCGAGAGAAGGTTCAACCCCTTCCGTCGGG
CTGAGATAGGTCACCCTTATCTGGCGTCAGCGAGCAGGTTTCCACCTGTG
TCCTGCCCTATCTCGACCATGTCTTCCGAGCTCACCGAACAACAGCTCCT
CGAGCAACAACAGACGCTCGAGAACCTCAACTTCGCCGGCGAACTTCAGA
CGTCTCGGCGAACTTCAGACGTCTCAGACGTCTGAAGTTCGCCGTCGAAG
TTTAGGTTCTCGAGCGTCTGTTGTTGCTCGAGGAGCTGTTGTTCGGTGAG
CTCGGAAGACATGATCGAGATAAGGCAGGACACAGGTGGAAACCTGCTCG
CTGACGCCAGATAAGGGTGACCTATCTCAGCCCGACGGAAGGGGTTGAAC
CTTCTCTCGACTGTGTGACCAGAAGAGACTTCCGGAGCGACGGTGGGGGA
CCGCTAGTGTACAGACTTGCGGGACAGGAGTAGTTCTCTAGGAAGAGCCA
ACGGTGTGGTCTCTGGGAAGAGAGGGAAAGAAGAAGAGTGACAGAGGAAG
GGTGAAGAGGGGTGTGCACAGCACAGCACACCGCTCGACAGCGCTGATGA
CGCAGAACCAGCCTGACTAGGTGGTGACACAGACACAGTCTGAGCTGGCG
TGCTGACGTGGTACAGCACTGACACGCTACCGGGGGAATCTCCCCGGGCG
TGAGACGACAAACAACCATCTAGGCGGTTGAGGATATATATGTGGTACGC
GGGCATGTGCATACAGTGACATACGGGTGCACGCGAACCGCACAGAAGAT
CCGCAGACGAGCGGAGGAACAGTTGGACAGGGGACCTCGAGTAGGACGTA
CGTACAGCATGACCCAACGAATCCATCTCTATCTAGGAAAAGAGTCTACA
TAGATTCTTTTTGCAGTCCAGGCGTTGTAGCTGTGTCATCGAGAGTCGAG
AGCTTTCCGAACATGTGTATCGTTTGATGTAAGCATCCGCTTCATCGTGG
AGGACAATCGAGCTTTGAAAATTGGTCCAGGAGGTTAGATTACTGCTGTA
TCTTCACCTACAAGGGTATCGAGATTTTGATTGTGAAATATGCCGTGATT
TTGTAAATAACGTTCCCGGAGGTAGACTAATGATTGTTCTTGAATCCCCA
TTGCGCCGCTGCTATGCACATAAATAACTACACAGCAGTTATCGCGGAAC
AACTCAAATCTTCGAGCACAATACCGTAGCTGCAATATATCATGAAGGTC
CATGCCCCCCCCCCCTGCAGGCGGGAACGGAGGAGCACAACCAAGGGGGC
GATTCATAGCAAAGGCGGCGTGCGCAGCCGCCTCTCTCACGGGCCTGGTG
GTGACGGCACCGTTTATCGTGGGGAGCGACAGCGCGGACGGAGTGGCTGC
CGTGGCGGCGGAGACCGCGAGGAACGTGGCGGTGGCTCCCGCCCTGGCCG
AGGAAGAATCGGGGAGCAAGCCCAGCTACGTCAAGTTCGACGTCCAGCTG
TCCGATGAGGAGTCGGGTTCTTTCGTGGTGGAAGTGCGCCCAGGTGTGTG
GTTCGTGCGCACAGCAGCAAGCAGCGAACACCAGCTTTTTCCCGTCAACA
CAAATGTAGCTTCGTTGCAGTTTACGTGCACACACAGGAAACACCAGCTT
CTTCGTCAACAACTGTGTGTAGCTTCGTTGCAGCATCAGCACGCGGGCGA
AGACCCTCCTTCAAAGGCCTTGCATTTCGTCTCAAGGAACTGACTGGAGG
AACCGAAACGGAAGCGTTGCATGTTTTTATTTTCTACATCAAGGGTGATT
GATCTTGGCGCAGCGACTCTTTGACCCTAAATCTAAAAAAAATACAAGGC
CTCCCTCCGGAGTGGGGCAATGAGGGCACCGCGGAGGAGGGATGCAAGAA
CATGAAAAAACACAGAGTAAAAAGATATGTTGTATGCATATACCGAAAGC
CTACTTCCAATAGGGTTGGCGCCATTTTCTTCGAAGTAAAGATCCTTCTG
GAGGAATTGGCTGCAAGAACACCCCGCGAATAACTTGTTTGTTTTCGCCC
ACGCGCAGATCTCTTGAGGGCATACAACCCTCGCGCCTAGATCTCAACCC
TCTCGGCGCCTCTCTACACCTGAGACTCGCTACGCCCAGAGAGCTAACTA
CCACACCACCAGTGTCCTGGTGATCTTATGTAAAACCGCCAAACCGTGGT
GTTGTATCGCTTTTGCCTCATGCTTATTGGTTGATCAAGAAAGCGTTGTC
TAAATATTTTCTGGATTTTTGTTGCTTGAAACCCCGCATGCCGCACGCAT
GTGTGTGTGCGTGTAGAATGCATCTGTATGCCCCAATGCCAACGTCGGTC
CCAACCCGAGGCTCTGCAATCTGCACGGTCTGCGTTGCTCTGAATCTCCG
CTGACACCACCACGACATGGTTCGACTGCTGGAAACGACGTGTGTCTGCA
GCTTTTCACGCAAGATGCTGACGTGTGCACTTGATTCTTGATATGGTGTT
CGACACTGACGTACGTACATAGTCTCACAACCCAAAAGAAATTTCTTGAG
ATTCTGGGGAAGGATGTCAAAATCTGTACCTAGCCTTTCTGCACCACGCC
AGCCAGTTCTATGTTCATACAGTAACGTGGTTCCATGTTCAGTTTAACGA
GTTCGAGCAGATGCTGTGGTCGTTGGTGCTTGTTAGCTAACACAGCGTTT
GTCTGTGCCTCTCGAAGCGTGAGAGCCAAGGAGGTATTTAACCCACGATG
AGCACACAGCTAAGACCCGAGCTGTACAACAGCAGCAGCAGCAGTGGCAG
GACGTTAACTCGAGTGTACGTAGAGTAGCAGAGAACCACAAGGTGTTTGT
TGAAAAGGAATGGAACGAGAGCGACGGATAGATGGCGACAGCACCTGCAC
CGGCACACCAGAGGTTATTGGAGCCAGAACGGCACCTCACCGCTCACATT
GAATGGTATACCCGCTTTTGCTCAGCGGTTTAGACGTTTAGACTACTTCT
TCTCGCGTGAAGAGGATGCGCGCGTGCGCGGGCGCGTGCCCACCCACCCA
TGGAACACCGGCAACTGTTGTTCTATAAAACAGCGCCTTCTCTGCACGTC
TCTGTGTTCAATTCTTTGATTTGATTTGAAGGGTACGACCGGATCTGTTT
TTCAAACTACTGCTGTGTATCTGATCAACGTGTTCTTCGCTGTTCTACGT
GCTACCGTGGCGGAAAGAATGTTTCAACAGCTGCAGAGAAGACGAAAGAT
TCTCAAAAGGCGAACAGATTCCTGGAAACAGAAAGGCGAAAGAACACCCG
AACAGTCCCCACCGCTAGCGACCAGCCAACACATGTATGTACCTGTTCTT
ACATGGAGTACATTCTATCAAAGACAGACCACTCATTCGAGATAATACCA
CAGCAGCAGTCTAAGGGGATGCGTGGAAGTCTTTGCAGAGAGTGGGATCA
ATGTTTCGTAATCTACGACGTTGCCAAACTCGGTGCCCTTGGCGCAGACT
GGGCTCCTCTCGGCGCGGCACGCTTCACCCTCTTGTCGAAGGCGGGCTTC
TTCGAAGACTGCCGTTTCTTCCGGGTGCTCAAGGGCTTCGTGGCGCAGTT
CGGCATCAACGGCGACCCGGCCGTGCAGGCCAAGTACAGGGGCGCGGTCA
TGCAGGACGACCCCGTCACCCAGTCCAACAAGCGGGGCACCGTGGTGTTC
GCGACCTCGGGCAAGAACTCGCGGACCACCCAGGTGTGTGTGTGTGTGTG
TGGGGGGGGGGGTGATTCGCCGGCGCCCCTGCATGCTGTCTGCTGCGTGG
TCAAGTCGGAATTTGTGTTGTGCTTGTTGGCTTGACTCACTAGACGGAAG
GCCTACATTCCACGGTGCTGTAGTTTGTTCGCATTTTTTGTAGCCTTTGT
TTGTTGTTGGAGAAGCGGTCACTTGCTGCCTTTTCTCCTGCCTTTTCTCC
TAGGAGAAGCGGTCACCTGCTGCCTTTTCTCCTAGTGCTGCGGCACACAC
CTACAGCCACGTGTTTTTGTTGGTGTCCTACTGTTGGAATCATGCCATGC
CGGTAAAAGCTCTGTGGCAGTATAATATTCAGATTGGGTCATTTGATGCC
TTTCTACTACCTGTGGCGAACACCTACAGCCTCGTGTTTTTGTTGTAAAT
AGTGTCTTGCCAGTAGAATCGTACCATGCCGGTAGAACTCTAACGTGCCC
TATTCCGGTTCGCGATGTCTGGTTTTTGACCCATATCACCCCTCCTCGGA
CGTGATTTCCGATTTGTCTGTCGGTCTCCGTCCGCAGCTGTTCATCAACT
TCGGCGACAAAGCGTTTTTGGACAAGAGCGGGTTCTCGCCAATTGGCAGA
GTAAGTGAAACCATCGGATGTGGTTCTGTTTTTTTTTGTACCGAGAGAGA
GAGAGAGAGAGAGAGAAAGAGAGAACGGCGATTGGGTTGGAATAATTAGG
GCTGGTATTTTAGCCTCGACTTCGATCGGCGCAGCGAGTTTGAGACCCCA
TCAAGTTTGCCTTTGCTCAAAATCTTGAGTGTGTAGGTCTGTGTCGGAGG
ACATCCCCTGAAGCACCGGGAAAAGTGCGGTCCAATTTTTGGTCAGGAAA
AGAGAGTTTTTGCATGGCACAACAAGCTCTCTCTCCTTGGAGTTTTCATT
ACGTAATTCTTCCTCCTTTCGTTCCTACAAGTGTTGCGTGATTTCGAGGC
CATGCCTCTTGTCAAACCACACAAACCTCCAAAAAATATGAATCAACACA
GTATGTCTGCTTGCTTGCGCATCTCCAACCTCCCTTGTCCCGTCAAAAGA
CGACCGACGTGCCACCCGTTGACCCTGGAAAAACGCGCTTTTGCCCTCCC
GACCCCCCTGTGTCCCGCTTTGACCAAAGGTTGTGGTGGGCATGGACGTT
GCGGATAGGCTGTACAAGGGCTACGGGGAGGGGGCCCCGCAGGGCAACGG
GCCAAACCAGAGCAAGATCCAGAGCCAGGGTAACGCCTACCTCAAGGGGT
CGTTCCCGAAGCTGAGCTACATCAAGTCCGCGACATCCGTACCGCGCCCA
GCTGAGGGGGACTACTAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1111:26682..32649-

>mRNA_E-siliculosus-1a_F_contig1111.753.1 ID=mRNA_E-siliculosus-1a_F_contig1111.753.1|Name=mRNA_E-siliculosus-1a_F_contig1111.753.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1704bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1111:26682..32649- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCGCCAGCCTGCTGCTGCTGTGCACGCCCACACCCAACACGATGATGGC
GCTGATGCGACTACTAGCTTGCCTTTCTCTGTGTCTCGTGGCCGTCGATG
GCTACAACGCAAGAGTACCCACCATGTCAGCCCGCCAGCCTGCTGCTGCT
GTGCACGCCCACACCCAACACGATGATGGCGCTGATGCGACTACTAGCTT
GCCTTTCTCTGTGTCTCGTGGCCGTCGATGGCTACAACGCAAGAGTACCC
ACCATGTCAGGCGGGAACGGAGGAGCACAACCAAGGGGGCGATTCATAGC
AAAGGCGGCGTGCGCAGCCGCCTCTCTCACGGGCCTGGTGGTGACGGCAC
CGTTTATCGTGGGGAGCGACAGCGCGGACGGAGTGGCTGCCGTGGCGGCG
GAGACCGCGAGGAACGTGGCGGTGGCTCCCGCCCTGGCCGAGGAAGAATC
GGGGAGCAAGCCCAGCTACGTCAAGTTCGACGTCCAGCTGTCCGATGAGG
AGTCGGGTTCTTTCGTGGTGGAAGTGCGCCCAGGCGGGAACGGAGGAGCA
CAACCAAGGGGGCGATTCATAGCAAAGGCGGCGTGCGCAGCCGCCTCTCT
CACGGGCCTGGTGGTGACGGCACCGTTTATCGTGGGGAGCGACAGCGCGG
ACGGAGTGGCTGCCGTGGCGGCGGAGACCGCGAGGAACGTGGCGGTGGCT
CCCGCCCTGGCCGAGGAAGAATCGGGGAGCAAGCCCAGCTACGTCAAGTT
CGACGTCCAGCTGTCCGATGAGGAGTCGGGTTCTTTCGTGGTGGAAGTGC
GCCCAGACTGGGCTCCTCTCGGCGCGGCACGCTTCACCCTCTTGTCGAAG
GCGGGCTTCTTCGAAGACTGCCGTTTCTTCCGGGTGCTCAAGGGCTTCGT
GGCGCAGTTCGGCATCAACGGCGACCCGGCCGTGCAGGCCAAGTACAGGG
GCGCGGTCATGCAGGACGACCCCGTCACCCAGTCCAACAAGCGGGGCACC
GTGGTGTTCGCGACCTCGGGCAAGAACTCGCGGACCACCCAGACTGGGCT
CCTCTCGGCGCGGCACGCTTCACCCTCTTGTCGAAGGCGGGCTTCTTCGA
AGACTGCCGTTTCTTCCGGGTGCTCAAGGGCTTCGTGGCGCAGTTCGGCA
TCAACGGCGACCCGGCCGTGCAGGCCAAGTACAGGGGCGCGGTCATGCAG
GACGACCCCGTCACCCAGTCCAACAAGCGGGGCACCGTGGTGTTCGCGAC
CTCGGGCAAGAACTCGCGGACCACCCAGCTGTTCATCAACTTCGGCGACA
AAGCGTTTTTGGACAAGAGCGGGTTCTCGCCAATTGGCAGACTGTTCATC
AACTTCGGCGACAAAGCGTTTTTGGACAAGAGCGGGTTCTCGCCAATTGG
CAGAGGCTACGGGGAGGGGGCCCCGCAGGGCAACGGGCCAAACCAGAGCA
AGATCCAGAGCCAGGGTAACGCCTACCTCAAGGGGTCGTTCCCGAAGCTG
AGCTACATCAAGTCCGCGACATCCGTACCGCGCCCAGCTGAGGGGGACTA
CTAGGGCTACGGGGAGGGGGCCCCGCAGGGCAACGGGCCAAACCAGAGCA
AGATCCAGAGCCAGGGTAACGCCTACCTCAAGGGGTCGTTCCCGAAGCTG
AGCTACATCAAGTCCGCGACATCCGTACCGCGCCCAGCTGAGGGGGACTA
CTAG
back to top