mRNA_E-siliculosus-1a_F_contig1001.73.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1001.73.1 vs. uniprot
Match: D8LCR7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCR7_ECTSI) HSP 1 Score: 422 bits (1086), Expect = 7.440e-143 Identity = 216/234 (92.31%), Postives = 222/234 (94.87%), Query Frame = 3 Query: 99 MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKALRMSEEVAAEXXXXXXXXXXPAGPAMSASIPFLKQPENLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGNEPGDFGFDPMNISKKSADVREKYQLQEIKNGRLAMSAIGGLVHQSLLLGGGVPFHA 800
MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKALRM+EEVAAE PAGPAMSASIPFL+QP+NLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGNEPGDFGFDPM ++KK ADVREKYQLQEIKNGRLAMSAIGGL+HQSLLLGGGVPFHA
Sbjct: 1 MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKALRMAEEVAAEPEAAVEPEPVPAGPAMSASIPFLEQPKNLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGNEPGDFGFDPMMLAKKPADVREKYQLQEIKNGRLAMSAIGGLIHQSLLLGGGVPFHA 234
BLAST of mRNA_E-siliculosus-1a_F_contig1001.73.1 vs. uniprot
Match: A0A835Z4D2_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D2_9STRA) HSP 1 Score: 222 bits (565), Expect = 8.000e-66 Identity = 106/169 (62.72%), Postives = 133/169 (78.70%), Query Frame = 3 Query: 291 MSASIPFLKQPENLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGNEPGDFGFDPMNISKKSADVREKYQLQEIKNGRLAMSAIGGLVHQSLLLGGGVPFH 797
MS S+PFL +P+ L+G VG+ FDPF + + P+ F+RE+ELKHGR+AMLAVVG++VSE++H+PG AY + NPVDA+ VG PMLQIF FCGFLE FH GKMTM +MH DG PGDFGFDP+N+SK A + + YQL EIKNGRLAM AI GL+HQS++ G GVPF+
Sbjct: 1 MSKSLPFLVKPKQLDGWVGNAEFDPFSLSELLPMAFVRESELKHGRIAMLAVVGFVVSELIHIPGEAYQASNPVDAVNMVGAQPMLQIFAFCGFLESVFHKGKMTMMDMHADGQTPGDFGFDPLNVSKDPAKLAQ-YQLSEIKNGRLAMMAISGLIHQSIITGHGVPFN 168
BLAST of mRNA_E-siliculosus-1a_F_contig1001.73.1 vs. uniprot
Match: A0A6V1U3D5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U3D5_HETAK) HSP 1 Score: 203 bits (517), Expect = 7.730e-59 Identity = 103/164 (62.80%), Postives = 126/164 (76.83%), Query Frame = 3 Query: 291 MSASIPFLKQPENLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGN-EPGDFGFDPMNISKKSADVREKYQLQEIKNGRLAMSAIGGLVHQSLLLG 779
MS S+PFL P+N GM+GD GFDPFGF+ F +K+MREAELKHGRV+MLAVVG+LVS+ VH+PG AY S NP+DA++ VGP P+ QIFLFCGFLE+ + GKMTM +M ED +PG GFDPMN+ K E+ QL+E++NGRLAM AIGGLVH LL G
Sbjct: 1 MSKSMPFLAAPKNTAGMIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIDALSMVGPQPLAQIFLFCGFLEFTMNKGKMTMLDMFEDKERKPGFLGFDPMNLGKGGPS--EEMQLKELENGRLAMCAIGGLVHHFLLFG 162
BLAST of mRNA_E-siliculosus-1a_F_contig1001.73.1 vs. uniprot
Match: W7TJ16_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ16_9STRA) HSP 1 Score: 186 bits (472), Expect = 1.480e-50 Identity = 92/166 (55.42%), Postives = 119/166 (71.69%), Query Frame = 3 Query: 285 PAMSASIPFLKQPENLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGN-EPGDFGFDPMNISKKSADVREKYQLQEIKNGRLAMSAIGGLVHQSLLLG 779
P S S+PFL +P+NL+GMVGD+GFDP G A ++++REAELK+GRVAMLA +G++V E + +PG Y N V A VGP P++QIFLFCGFLE+ H GKMT +M DG EPG+FGFDP+ K + RE+ L E+KNGRLAM AIGGL+H +L+ G
Sbjct: 125 PVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPS-KRERLALAELKNGRLAMIAIGGLIHHALVTG 289
BLAST of mRNA_E-siliculosus-1a_F_contig1001.73.1 vs. uniprot
Match: A0A7S4DC05_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC05_HETAK) HSP 1 Score: 171 bits (434), Expect = 1.310e-46 Identity = 84/134 (62.69%), Postives = 104/134 (77.61%), Query Frame = 3 Query: 276 PAGPAMSASIPFLKQPENLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGN-EPGDFGFDPMNISK 674
PA MS S+PFL P+N GM+GD GFDPFGF+ F +K+MREAELKHGRV+MLAVVG+LVS+ VH+PG AY S NP++A++ VGP P+ QIFLFCGFLE+ + GKMTM +M ED +PG GFDPMN+ K
Sbjct: 40 PAPMEMSKSMPFLAAPKNTAGMIGDKGFDPFGFSDTFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIEALSMVGPQPLAQIFLFCGFLEFTQNKGKMTMLDMFEDKERKPGFLGFDPMNLGK 173
BLAST of mRNA_E-siliculosus-1a_F_contig1001.73.1 vs. uniprot
Match: A0A1Z5JQG8_FISSO (Light-harvesting complex I chlorophyll a/b binding protein 4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQG8_FISSO) HSP 1 Score: 161 bits (407), Expect = 1.810e-42 Identity = 84/165 (50.91%), Postives = 119/165 (72.12%), Query Frame = 3 Query: 291 MSASIPFLKQPENLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGNE-PGDFGFDPMNISK-KSADVREKYQLQEIKNGRLAMSAIGGLVHQSLLLG 779
MS SIPFL P+N G VGD+GFDP GF+ F +K++RE+E+KH R AMLA +G++V + V +PG + ++ + A AAVGP PMLQIF G LE+ +NGK+T++NM D + PG+FGFDP+ ++K KSA+ +L+EIKNGRLAM AIGG++ +++ G
Sbjct: 32 MSKSIPFLTAPKNTAGWVGDVGFDPLGFSDYFDMKWLRESEIKHSRAAMLASLGFMVQQFVTLPGMPDVDDSML-APAAVGPSPMLQIFFGLGVLEFWSNNGKVTIENMFSDSSRVPGNFGFDPLGMAKGKSAEAMADMELKEIKNGRLAMCAIGGMMAHNIVTG 195
BLAST of mRNA_E-siliculosus-1a_F_contig1001.73.1 vs. uniprot
Match: A0A7S0T6N2_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6N2_9RHOD) HSP 1 Score: 160 bits (404), Expect = 6.720e-42 Identity = 83/166 (50.00%), Postives = 110/166 (66.27%), Query Frame = 3 Query: 294 SASIPFLKQPENL-EGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGNEPGDFGFDPMNISKKSADVREKYQLQEIKNGRLAMSAIGGLVHQSLLLGGGV 788
SAS+PFL +P N+ E MVG GFDP G +T +F++E+E+KHGR+ MLAVVG+LV EVVH+PG + ++ +A + V G + QIF+ CG E+ H GKMT ++ D PG GFDP+N+ K + K+QL EIKNGRLAM AIGG +HQ L GV
Sbjct: 34 SASVPFLSKPANIDESMVGYTGFDPLGLSTYLSARFLQESEIKHGRICMLAVVGFLVQEVVHLPGEVFSAKLATEAFSKVPTGGLWQIFIACGVAEYIGHKGKMTYMDISADKGTPGAMGFDPLNLGKDPEKFK-KFQLNEIKNGRLAMIAIGGFIHQMWLTKQGV 198
BLAST of mRNA_E-siliculosus-1a_F_contig1001.73.1 vs. uniprot
Match: M2VTV2_GALSU (Light-harvesting complex protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTV2_GALSU) HSP 1 Score: 160 bits (405), Expect = 7.990e-42 Identity = 80/167 (47.90%), Postives = 116/167 (69.46%), Query Frame = 3 Query: 294 SASIPFLKQPENLEGMV-GDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGN-EPGDFGFDPMNISKKSADVREKYQLQEIKNGRLAMSAIGGLVHQSLLLGGGV 788
S S+PFL++P+NL+G GD+GFDP + + ++++RE+E+KHGR+ MLA VG++V E VH+PG + ++ +DA+ V G + QIFLF G LE+ + GKMT +M D N +PGDFGFDP+ + K R++Y++ EIKNGRLAM A+GG +H LL GV
Sbjct: 49 SLSVPFLERPKNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRICMLAAVGFIVQEFVHLPGEVFSNKVAIDALFQVPSGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGK-DPQARKRYEVAEIKNGRLAMLAVGGFIHHMLLTHQGV 214
BLAST of mRNA_E-siliculosus-1a_F_contig1001.73.1 vs. uniprot
Match: Q9FDZ6_GALSU (Light-harvesting protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9FDZ6_GALSU) HSP 1 Score: 159 bits (403), Expect = 1.630e-41 Identity = 81/167 (48.50%), Postives = 114/167 (68.26%), Query Frame = 3 Query: 294 SASIPFLKQPENLEGMV-GDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGN-EPGDFGFDPMNISKKSADVREKYQLQEIKNGRLAMSAIGGLVHQSLLLGGGV 788
S S+PFL++P+NL+G GD+GFDP + + ++++RE+E+KHGR+AMLA +G++V E VH+PG + ++ VDA V G + QIFLF G LE+ + GKMT +M D N +PGDFGFDP+ + K R +YQ+ EIKNGRLAM A+GG +H L GV
Sbjct: 48 SPSVPFLERPQNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRIAMLAALGFIVQEFVHLPGQVFSNKVAVDAFFQVPRGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGK-DPQTRRRYQVAEIKNGRLAMLAVGGFIHHMFLTHQGV 213
BLAST of mRNA_E-siliculosus-1a_F_contig1001.73.1 vs. uniprot
Match: A0A6V0YBZ9_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6V0YBZ9_9STRA) HSP 1 Score: 158 bits (399), Expect = 2.970e-41 Identity = 81/169 (47.93%), Postives = 120/169 (71.01%), Query Frame = 3 Query: 279 AGPAMSASIPFLKQPENLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGNE-PGDFGFDPMNISK-KSADVREKYQLQEIKNGRLAMSAIGGLVHQSLLLG 779
AG MS S+PFL +P+NLEG VGD+GFDP GF+ F +K++REAE+KHGR +MLA +G+++ E +PG ++ ++ + VG PMLQI L+ G LE+ + G +TM+ M ED + PG+ GFDPM ++ KS + +++ QL+E+KNGRLAM AIGG++H + + G
Sbjct: 34 AGGEMSKSLPFLLKPKNLEGYVGDVGFDPLGFSEYFDMKWLREAEIKHGRSSMLATLGFVMQEFWTLPGYEHVDDSNLGP-TVVGASPMLQIILWMGVLEFWTNKGNVTMETMFEDPDRVPGNLGFDPMGLAVGKSQEEKDRMQLKELKNGRLAMLAIGGMIHHNWVTG 201 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1001.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1001.73.1 >prot_E-siliculosus-1a_F_contig1001.73.1 ID=prot_E-siliculosus-1a_F_contig1001.73.1|Name=mRNA_E-siliculosus-1a_F_contig1001.73.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=235bp MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKALRMSEEVAAEPback to top mRNA from alignment at E-siliculosus-1a_F_contig1001:7353..12508+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1001.73.1 ID=mRNA_E-siliculosus-1a_F_contig1001.73.1|Name=mRNA_E-siliculosus-1a_F_contig1001.73.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5156bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1001:7353..12508+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1001:7353..12508+ >mRNA_E-siliculosus-1a_F_contig1001.73.1 ID=mRNA_E-siliculosus-1a_F_contig1001.73.1|Name=mRNA_E-siliculosus-1a_F_contig1001.73.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1410bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1001:7353..12508+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |