mRNA_E-siliculosus-1a_F_contig11080.734.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11080.734.1
Unique NamemRNA_E-siliculosus-1a_F_contig11080.734.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11080.734.1 vs. uniprot
Match: B8CGQ2_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CGQ2_THAPS)

HSP 1 Score: 59.3 bits (142), Expect = 4.070e-9
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    7 ERPYHADRTTSRPLCEVKRRRARLVLRWGTTWEALVLFLFC 129
            ERPYH+D T SR L EVK  RARLVLRWGTT E+LVLF FC
Sbjct:  520 ERPYHSDNTASRLLSEVKHCRARLVLRWGTTLESLVLF-FC 559
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BLAST of mRNA_E-siliculosus-1a_F_contig11080.734.1 vs. uniprot
Match: V4BHB9_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BHB9_LOTGI)

HSP 1 Score: 52.8 bits (125), Expect = 7.780e-8
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   10 RPYHADRTTSRPLCEVKRRRARLVLRWGTTWEALVL 117
            RPYH + T+SRP+ EVK+RRARLVL W T WE  VL
Sbjct:   56 RPYHVENTSSRPITEVKQRRARLVLGWVTAWEHRVL 91
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BLAST of mRNA_E-siliculosus-1a_F_contig11080.734.1 vs. uniprot
Match: A0A816YMV4_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816YMV4_9BILA)

HSP 1 Score: 50.8 bits (120), Expect = 1.750e-7
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   10 RPYHADRTTSRPLCEVKRRRARLVLRWGTTWE 105
            RPYH + T+SRP+ EVK+RRARLVL W T WE
Sbjct:    1 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWE 32
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BLAST of mRNA_E-siliculosus-1a_F_contig11080.734.1 vs. uniprot
Match: A0A3S0ZIY3_ELYCH (Uncharacterized protein (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZIY3_ELYCH)

HSP 1 Score: 50.8 bits (120), Expect = 5.420e-7
Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   10 RPYHADRTTSRPLCEVKRRRARLVLRWGTTWEALVL 117
            RPYH + T SRP+ EVK+RRA LVLRW T WE  VL
Sbjct:   65 RPYHVENTGSRPITEVKQRRAWLVLRWVTAWEHHVL 100
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BLAST of mRNA_E-siliculosus-1a_F_contig11080.734.1 vs. uniprot
Match: A0A3S0Z3S7_ELYCH (Uncharacterized protein (Fragment) n=2 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0Z3S7_ELYCH)

HSP 1 Score: 50.1 bits (118), Expect = 5.830e-7
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:   10 RPYHADRTTSRPLCEVKRRRARLVLRWGTTWE 105
            RPYH + T SRP+ EVK+RRA LVLRW T WE
Sbjct:    1 RPYHVENTGSRPITEVKQRRAWLVLRWVTAWE 32
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BLAST of mRNA_E-siliculosus-1a_F_contig11080.734.1 vs. uniprot
Match: A0A815TME6_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815TME6_ADIRI)

HSP 1 Score: 51.6 bits (122), Expect = 1.970e-6
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    4 QERPYHADRTTSRPLCEVKRRRARLVLRWGTTWE 105
            Q RPYH + T+SRP+ EVK+RRARLVL W T WE
Sbjct:  243 QPRPYHVEYTSSRPITEVKQRRARLVLGWVTAWE 276
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BLAST of mRNA_E-siliculosus-1a_F_contig11080.734.1 vs. uniprot
Match: A0A4C1YSQ9_EUMVA (Uncharacterized protein n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1YSQ9_EUMVA)

HSP 1 Score: 49.3 bits (116), Expect = 2.460e-6
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    7 ERPYHADRTTSRPLCEVKRRRARLVLRWGTTWE 105
            +RPYHA+ T SRP+ EVK+RRAR VL W T WE
Sbjct:   49 QRPYHAEYTGSRPITEVKQRRARSVLGWVTAWE 81
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BLAST of mRNA_E-siliculosus-1a_F_contig11080.734.1 vs. uniprot
Match: A0A815RAB9_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815RAB9_ADIRI)

HSP 1 Score: 50.8 bits (120), Expect = 3.990e-6
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   10 RPYHADRTTSRPLCEVKRRRARLVLRWGTTWE 105
            RPYH + T+SRP+ EVK+RRARLVL W T WE
Sbjct: 1694 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWE 1725
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BLAST of mRNA_E-siliculosus-1a_F_contig11080.734.1 vs. uniprot
Match: A0A815F560_ADIRI (Hypothetical protein n=6 Tax=Adineta ricciae TaxID=249248 RepID=A0A815F560_ADIRI)

HSP 1 Score: 50.8 bits (120), Expect = 3.990e-6
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   10 RPYHADRTTSRPLCEVKRRRARLVLRWGTTWE 105
            RPYH + T+SRP+ EVK+RRARLVL W T WE
Sbjct:  821 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWE 852
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BLAST of mRNA_E-siliculosus-1a_F_contig11080.734.1 vs. uniprot
Match: A0A815DD86_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A815DD86_9BILA)

HSP 1 Score: 50.8 bits (120), Expect = 3.990e-6
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   10 RPYHADRTTSRPLCEVKRRRARLVLRWGTTWE 105
            RPYH + T+SRP+ EVK+RRARLVL W T WE
Sbjct:  505 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWE 536
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11080.734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
B8CGQ2_THAPS4.070e-975.61Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
V4BHB9_LOTGI7.780e-866.67Uncharacterized protein (Fragment) n=1 Tax=Lottia ... [more]
A0A816YMV4_9BILA1.750e-768.75Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]
A0A3S0ZIY3_ELYCH5.420e-766.67Uncharacterized protein (Fragment) n=1 Tax=Elysia ... [more]
A0A3S0Z3S7_ELYCH5.830e-768.75Uncharacterized protein (Fragment) n=2 Tax=Elysia ... [more]
A0A815TME6_ADIRI1.970e-667.65Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A4C1YSQ9_EUMVA2.460e-666.67Uncharacterized protein n=1 Tax=Eumeta variegata T... [more]
A0A815RAB9_ADIRI3.990e-668.75Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
A0A815F560_ADIRI3.990e-668.75Hypothetical protein n=6 Tax=Adineta ricciae TaxID... [more]
A0A815DD86_9BILA3.990e-668.75Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11080contigE-siliculosus-1a_F_contig11080:1..129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size129
Model size129
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927614.4014506-CDS-E-siliculosus-1a_F_contig11080:0..1291622927614.4014506-CDS-E-siliculosus-1a_F_contig11080:0..129Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11080 1..129 +
1696318610.273276-CDS-E-siliculosus-1a_F_contig11080:0..1291696318610.273276-CDS-E-siliculosus-1a_F_contig11080:0..129Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11080 1..129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11080.734.1prot_E-siliculosus-1a_F_contig11080.734.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11080 1..129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11080.734.1

>prot_E-siliculosus-1a_F_contig11080.734.1 ID=prot_E-siliculosus-1a_F_contig11080.734.1|Name=mRNA_E-siliculosus-1a_F_contig11080.734.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=43bp
HQERPYHADRTTSRPLCEVKRRRARLVLRWGTTWEALVLFLFC
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mRNA from alignment at E-siliculosus-1a_F_contig11080:1..129+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11080.734.1 ID=mRNA_E-siliculosus-1a_F_contig11080.734.1|Name=mRNA_E-siliculosus-1a_F_contig11080.734.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=129bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11080:1..129+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CATCAGGAACGGCCATACCACGCCGATCGCACCACATCCCGTCCGCTCTG
TGAAGTTAAGCGGCGTCGGGCCAGGCTAGTACTACGGTGGGGGACCACGT
GGGAAGCCCTGGTGCTGTTCCTTTTTTGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11080:1..129+

>mRNA_E-siliculosus-1a_F_contig11080.734.1 ID=mRNA_E-siliculosus-1a_F_contig11080.734.1|Name=mRNA_E-siliculosus-1a_F_contig11080.734.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=258bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11080:1..129+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CATCAGGAACGGCCATACCACGCCGATCGCACCACATCCCGTCCGCTCTG
TGAAGTTAAGCGGCGTCGGGCCAGGCTAGTACTACGGTGGGGGACCACGT
GGGAAGCCCTGGTGCTGTTCCTTTTTTGCCATCAGGAACGGCCATACCAC
GCCGATCGCACCACATCCCGTCCGCTCTGTGAAGTTAAGCGGCGTCGGGC
CAGGCTAGTACTACGGTGGGGGACCACGTGGGAAGCCCTGGTGCTGTTCC
TTTTTTGC
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