mRNA_E-siliculosus-1a_F_contig1108.731.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1108.731.1
Unique NamemRNA_E-siliculosus-1a_F_contig1108.731.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1108.731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1108contigE-siliculosus-1a_F_contig1108:19486..22170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size174
Model size339
Exons3
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1108.731.1prot_E-siliculosus-1a_F_contig1108.731.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1108 20580..22170 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927613.3923435-UTR-E-siliculosus-1a_F_contig1108:19485..195111622927613.3923435-UTR-E-siliculosus-1a_F_contig1108:19485..19511Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1108 19486..19511 -
1696318609.9920294-UTR-E-siliculosus-1a_F_contig1108:19485..195111696318609.9920294-UTR-E-siliculosus-1a_F_contig1108:19485..19511Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1108 19486..19511 -
1622927613.403697-UTR-E-siliculosus-1a_F_contig1108:20440..205791622927613.403697-UTR-E-siliculosus-1a_F_contig1108:20440..20579Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1108 20441..20579 -
1696318609.9997642-UTR-E-siliculosus-1a_F_contig1108:20440..205791696318609.9997642-UTR-E-siliculosus-1a_F_contig1108:20440..20579Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1108 20441..20579 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927613.4254258-CDS-E-siliculosus-1a_F_contig1108:20579..207211622927613.4254258-CDS-E-siliculosus-1a_F_contig1108:20579..20721Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1108 20580..20721 -
1696318610.0080705-CDS-E-siliculosus-1a_F_contig1108:20579..207211696318610.0080705-CDS-E-siliculosus-1a_F_contig1108:20579..20721Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1108 20580..20721 -
1622927613.9068966-CDS-E-siliculosus-1a_F_contig1108:22138..221701622927613.9068966-CDS-E-siliculosus-1a_F_contig1108:22138..22170Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1108 22139..22170 -
1696318610.0154798-CDS-E-siliculosus-1a_F_contig1108:22138..221701696318610.0154798-CDS-E-siliculosus-1a_F_contig1108:22138..22170Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1108 22139..22170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1108.731.1

>prot_E-siliculosus-1a_F_contig1108.731.1 ID=prot_E-siliculosus-1a_F_contig1108.731.1|Name=mRNA_E-siliculosus-1a_F_contig1108.731.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=58bp
QSCTDGAHPGSWYSSHNPRRRDTANTGRLSDIMSGFGIMDDTKPTTTTDF
KLRDDGT*
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mRNA from alignment at E-siliculosus-1a_F_contig1108:19486..22170-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1108.731.1 ID=mRNA_E-siliculosus-1a_F_contig1108.731.1|Name=mRNA_E-siliculosus-1a_F_contig1108.731.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2685bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1108:19486..22170- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGAGCTGTACGGACGGTGCTCACCCTGGAAGGTGAGTGCGGCGACAAGG
GATACTGCTGTAAATTTGCATGATCAACGGAGCGTCAACGCCAATTTTCG
CCCAACAAACGCGGGGGAAAAAGAAAACGCTGCAAGTCATGTACAAACAA
CAAGAGCATCCGCCACGAAGCCGAAAAACACAGACGGAGCTGAGAAGAGA
TCTGAGCTCAACAGTCGAAGCTGTCAAACAAACCGAGCCCAACCTGCAAA
CGAGCCGAAGCTCAACAGCAAGCTGGCAACGAGCCGAACTCAAACGACGG
CAGCGGCTACATGTACAGCGGAGAGCCTGAGCTCAACAACTGCTGTTGTT
TCTGGAACCGAAGTTCCGAGGCAGGTGCGTATAAAATAAAGGTAGAATCG
AGCAGAGACACGCTGAGGCGAACGTCTCCCGCCGGCATTCAGCACGAAGC
TCAGACGGGCGGGCCGCAGTCATGAGAGGGTCAGCCACACTCGAGCCCTA
CAGGCGGGAAGAGGGCGTATATATGCAACCATCATGGTCGAGAGGGTAAA
AATTGCAATACAACAGCAAAATATTCAAGGACACATCAAGTTTGCTCGCT
TGCACCTGACGATGCACCTGAATACCCGTGTACGCGAATTGTCACGTGGA
TCATCAAGACACGACACCACCAGTAGTAAACGGTGGTCAACACATGAGCA
AGGAATTCCTGGTCCCCACCGCATGAACGGAAAAATGCGAACAAAAATAA
ACCACAATGGCACAACAACGACAGCAGTAGTAGACTACTATAATAGACTA
CTGTGTGCGTATCACATCGAGAGTAGTCGATACTTACCGGTTGGTTGTGA
CCTCGGGTCGCCCACCCCACTGGACACGTGATGTAGCTTCGGCTCCCTCG
TCTGTGTCTGCAGTTTCGACTGCTCGCAAAACGGCCCTAACCGGTTGTTT
ACGACTTCGGTCACCCACCCCACTCGACACGTGATGTAGCTTCGGCTCAC
ACGTCTGTGTCTGCAGTTTCGACTGCTCGCAAACGGCACTAACCGCTGTT
TGTTTATGACTTCGGTCACCCACCCCACTGGATACGTGCTGTAGCTTCGG
CTCACACTCGCCTGTGACTGCAGTTTCGACTGCTCGCCGTGCTCACACCG
CGGGTCCATGCCACTTGTTTCGACTATGCTCGCAGTTTCGACTGCCCGCC
GTGCTCGCACCGCGGTTTCCTTACCTGTTGTTTCGACAACCACCCCATTG
TTTGTTGCTGCTTCGGCGTCTCTAGCTGTAACCTCGGTTACTGCTGCAGT
CTCGACTGTAACCTGCTAGGTAACTGCCGCTTCGGCGCCATTTGGAACCT
CGGTTGCTCCTGCAGTTTCGACTGTTCCACCTGCTACAGTATCTTGAATT
CTCCGGTGACCCCCCCCCCCTTCCACGCTTCCTTCCATCCACGATCAAGC
TGGTACAGCAGTCACAACCCGAGGCGACGAGACACCGCCAACACCGGCCG
ACTCTCGGACATCATGTCCGGCTTCGGCATCATGGACGACACTAAACCGA
CGACAACCACGGACTTCAAGCTCCGAGACGATGGGACCTGAGCGACCTCT
CTCTTCGCCGACCAGGTGTTCGGCTGCTGCTGAAGGCGCGATTTCACCTA
CGAAGGAGGGACTTTCGGGATGATTGGACGCCGCCGCCGGTGGTGTCTCA
TGAGCCCACGCTGGCAGGGCCTTACTACCGGTGTGCTGCTGGAGTTCAAT
GTGGAGCATTTGTTTTTTCGGGATCGTTTTGTTCGGCTCCGGCCCCTATT
TCGGCTTCGGCCTCTGTTTCGGCCTCGGCCTTCTTTCGGCTTCGGCCCCC
CATTCAACTTCGGTTGTTTGTTCGGCTTCGCCCCCCCCCAGTTTCTTCGG
AAACCCGTGTTGCGTTTCCGAACCTTCCCCCGGCTTCGGCTCCCCCCAGT
TTCTTCGGAAACCCGTGTTGCGTTTTCGCACCTTCCCCCGGCTTCGGCCC
CCCCGTTTCCTCGGAAACCCGTGTTGCGTTTTCGAACCTTCCCCCAGCTT
CGGCGCCCACCGTTTCTTCGGAAACTACTGCACCCCCTGTTTTTTCCACC
GCTCATCATCCCGTAGATTCAGTAATCGTGCAGAACATTGGGTTTTCGAC
CCCACCCCCCTCTTCGGCGTCTGTCCACCTGTGCCGGGTGTTTCGCGTGC
TGTGTGGTCTTCGGACCATGCTTCCTCTGCTGCTTCGGTAGCCGCTGTCA
CACCCCCTGTTGTTCCCAATGATTGTGTTTTGCCACTTTCGTCAAACATT
GCACATACATGCCCGTCAACCCGATCGATGCGACTGATGCTACTGCTCGT
GCTGCTCATGTCACTACGGTGAACGCGCGTACATCGCTCTTAACTTGAAA
AAAGTCGAGAATGTCGCTACCATGCCCGTCCCCACAACTCTGTTGCCGAG
AGATGGCTATCAACAGCTTCTCCGCAAAACACGCGCGGCCTTGTCCGACG
TTTTGTTACTGTGTGATGAAAAGAGTGTTGGTGGGTTGAACGGCTCTGAT
TTCGTTCGTGGATGGGAACGTCCCCTCGAAAAAAAACTTTTGAGTGCGAT
CACCCCTGACAAGCCCTCTACTGCCGACCTCGTTCTCTCCATTTACTGAT
TTTTTTCAGCAAGTGAGCCGGAGCTTGGATGGTGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1108:19486..22170-

>mRNA_E-siliculosus-1a_F_contig1108.731.1 ID=mRNA_E-siliculosus-1a_F_contig1108.731.1|Name=mRNA_E-siliculosus-1a_F_contig1108.731.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=348bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1108:19486..22170- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGAGCTGTACGGACGGTGCTCACCCTGGAAGCAGAGCTGTACGGACGGT
GCTCACCCTGGAAGCTGGTACAGCAGTCACAACCCGAGGCGACGAGACAC
CGCCAACACCGGCCGACTCTCGGACATCATGTCCGGCTTCGGCATCATGG
ACGACACTAAACCGACGACAACCACGGACTTCAAGCTCCGAGACGATGGG
ACCTGACTGGTACAGCAGTCACAACCCGAGGCGACGAGACACCGCCAACA
CCGGCCGACTCTCGGACATCATGTCCGGCTTCGGCATCATGGACGACACT
AAACCGACGACAACCACGGACTTCAAGCTCCGAGACGATGGGACCTGA
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