Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 318 |
| Model size | 411 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927507.000428-CDS-E-siliculosus-1a_F_contig1001:25490..25808 | 1622927507.000428-CDS-E-siliculosus-1a_F_contig1001:25490..25808 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1001 25491..25808 + |
| 1696318557.6514616-CDS-E-siliculosus-1a_F_contig1001:25490..25808 | 1696318557.6514616-CDS-E-siliculosus-1a_F_contig1001:25490..25808 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1001 25491..25808 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927507.0141892-UTR-E-siliculosus-1a_F_contig1001:25808..25900 | 1622927507.0141892-UTR-E-siliculosus-1a_F_contig1001:25808..25900 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1001 25809..25900 + |
| 1696318557.6621478-UTR-E-siliculosus-1a_F_contig1001:25808..25900 | 1696318557.6621478-UTR-E-siliculosus-1a_F_contig1001:25808..25900 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1001 25809..25900 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1001.74.1 >prot_E-siliculosus-1a_F_contig1001.74.1 ID=prot_E-siliculosus-1a_F_contig1001.74.1|Name=mRNA_E-siliculosus-1a_F_contig1001.74.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=106bp
WPKEKRRLTQDQYPSRVGDRTKEHVNIQSQKLEATRPYCRPGKGGKKRKI
RPIGTAGTLSCSLPIIPITYMTLGGSEIRTLPRTFRTSTRCDLPNPSRDY
CKVKR* back to topmRNA from alignment at E-siliculosus-1a_F_contig1001:25491..25900+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1001.74.1 ID=mRNA_E-siliculosus-1a_F_contig1001.74.1|Name=mRNA_E-siliculosus-1a_F_contig1001.74.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=410bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1001:25491..25900+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGGCCCAAAGAGAAAAGACGGTTGACCCAAGACCAATATCCTTCGCGGGT
GGGAGACCGAACGAAGGAGCACGTGAACATACAGAGTCAAAAACTTGAAG
CAACCCGCCCATATTGTCGCCCTGGAAAAGGGGGCAAGAAAAGGAAAATT
CGACCAATCGGAACTGCGGGCACCCTTTCTTGCTCTCTGCCCATCATACC
CATAACGTACATGACCCTCGGAGGCTCGGAGATACGTACTCTGCCGAGAA
CCTTCAGAACGAGTACGAGATGCGATCTACCCAACCCATCTCGCGATTAC
TGCAAGGTAAAAAGGTAAAAGTTACTGCGGCGTGTATCAAGTTACTACAA
CCAACCGTAATTCATCCACGATCAATCGAATCCAAACAGCAGATCAGATA
AAACCGTGTA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1001:25491..25900+ >mRNA_E-siliculosus-1a_F_contig1001.74.1 ID=mRNA_E-siliculosus-1a_F_contig1001.74.1|Name=mRNA_E-siliculosus-1a_F_contig1001.74.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1001:25491..25900+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGGCCCAAAGAGAAAAGACGGTTGACCCAAGACCAATATCCTTCGCGGGT
GGGAGACCGAACGAAGGAGCACGTGAACATACAGAGTCAAAAACTTGAAG
CAACCCGCCCATATTGTCGCCCTGGAAAAGGGGGCAAGAAAAGGAAAATT
CGACCAATCGGAACTGCGGGCACCCTTTCTTGCTCTCTGCCCATCATACC
CATAACGTACATGACCCTCGGAGGCTCGGAGATACGTACTCTGCCGAGAA
CCTTCAGAACGAGTACGAGATGCGATCTACCCAACCCATCTCGCGATTAC
TGCAAGGTAAAAAGGTAATGGCCCAAAGAGAAAAGACGGTTGACCCAAGA
CCAATATCCTTCGCGGGTGGGAGACCGAACGAAGGAGCACGTGAACATAC
AGAGTCAAAAACTTGAAGCAACCCGCCCATATTGTCGCCCTGGAAAAGGG
GGCAAGAAAAGGAAAATTCGACCAATCGGAACTGCGGGCACCCTTTCTTG
CTCTCTGCCCATCATACCCATAACGTACATGACCCTCGGAGGCTCGGAGA
TACGTACTCTGCCGAGAACCTTCAGAACGAGTACGAGATGCGATCTACCC
AACCCATCTCGCGATTACTGCAAGGTAAAAAGGTAA back to top
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