mRNA_E-siliculosus-1a_F_contig1106.722.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1106.722.1 vs. uniprot
Match: D8LIW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIW9_ECTSI) HSP 1 Score: 1233 bits (3191), Expect = 0.000e+0 Identity = 725/815 (88.96%), Postives = 740/815 (90.80%), Query Frame = 1
Query: 1129 MEGVRARTREDGTPKVTFPRNFDEIVGLMGRNDLEDRSPDQASAASNRSGCAGKGAGGNSREGGGGKASGRETGDRAPPWTKYLLEEGLDRTKEFSRYRGMFAEEQTGEDRLMRGLAKMRELDVRLARVTGRARELKLMAREAAEQAERAAVVGTATSKGEQAPCLKGRGPVAVEDVPTNQPPLRLPLPLSSESAPFGPVSSRVSIGSARKSEATALGTERSETSVASGSQHDGDGGASNSRDRQAMRGRAFVTQNFRGTARTGVSSSNAGSTAISVNGSDDNTCNSRPQCFSRGKKGVGSHGGDSXXXXXXXXXXXXXXXXXXXXXXXXXVSFVLRNKRYAARASRGRLTDEEESLVSRFVEDADGFNDDGEPTGEEPSGVWAEITPYGGIGASEDSARLAEINAKLLAMRGAETLDRDDNAQEEKGAPINASEQQQQRSPKTATDSEPARVQNDRGREAPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPRYATTPGDAALREQRAKREARCRERAIDTALEQLRDFLFKESVAGGRSLRXXXXXXXXXLARSAPLDMQGRVRRGAGRVDSLLGGEGPQPVGEWEVKHALRQGEEELHGKDLASRERIEELLATVRQESAATAASRSATDPPPPQHGSDAIDPDRFPHGTSLDDFFSLKDGPAEIEPPLAAAATGRPRLMLPLSGSQSFPHAEAKHDEGRGGAGTNGETPPEQAGREITGGPSTGRSAAVSDEVSTTSVEGPPGAARRARPRLPRKKKNSTAVPPELAALFRAPLLVPRHLEPPIAGIAAAAVAAGGSRRVKPGAGARIVG 3573
MEGVRARTREDGTPKVTFPRNFDEIVGLMGRNDLEDRSPDQASAASNRSG AGKGAGGNSREGGGGKASGRETGDRAPPWT+YLLEEGLDRTKEFSRYRGMFAEEQTG DRLMRGLAK+RELDVRL RVTGRARELKLMAREAAEQAERAA VG ATSKGE+A CLKGRGPVAVEDVPTN PPLRLPLPLSSE APFGPVSSRVSIGSARKSEA A QHDGDGGASNSRDRQA RGRAFVTQNFRGTARTG SNAGSTAISVNGSDDNTC+SR Q FSRGK GVGSHGGDS XXXXXXXXXXXXXXXXXVSFVLRNKRYAARASRGRLTDE+ESLVSRFV+DADGFNDDGEPTGEEPSGVWAEITPYGG G SED+ARLAEINAKLLAMRGAETLDRDD+ QEEKGAPINASEQQQ RSPKTATD EPARVQND GREAPPPXXXXXXXXXXXXXXX AVP YATTPGDAALREQRAKREARCRERAIDTALEQLRD LFKESVAGGRSLR LARSAPLDMQGRVRRGAGR+DSLLGGEGPQPVGEWEVKHALRQGEEEL GKDLASRERIEE+LATVRQE+AATAASRSAT+PPPPQHGSDAIDPDRFPHGTSLDDFFSLKDGPAEIEP LAAAATGRPRLMLPLSGSQ FPHAEAKHDEG+GGAGT+GETPPEQAGREIT GPSTGRSAAVSDEVSTTS EGPPGAAR ARPRLPRKKKN TAVPPE+AALFRAPLLVPRHLEPPIAGIAAAAVAAGGSRRVKPGA ARIVG
Sbjct: 1 MEGVRARTREDGTPKVTFPRNFDEIVGLMGRNDLEDRSPDQASAASNRSGYAGKGAGGNSREGGGGKASGRETGDRAPPWTQYLLEEGLDRTKEFSRYRGMFAEEQTGGDRLMRGLAKIRELDVRLLRVTGRARELKLMAREAAEQAERAAAVGIATSKGERALCLKGRGPVAVEDVPTNHPPLRLPLPLSSELAPFGPVSSRVSIGSARKSEAIAXXXXXXXXXXXXXXQHDGDGGASNSRDRQARRGRAFVTQNFRGTARTG-GYSNAGSTAISVNGSDDNTCSSRAQGFSRGKSGVGSHGGDSGSQNEGRGXXXXXXXXXXXXXXXXXVSFVLRNKRYAARASRGRLTDEQESLVSRFVQDADGFNDDGEPTGEEPSGVWAEITPYGGTGTSEDNARLAEINAKLLAMRGAETLDRDDDTQEEKGAPINASEQQQ-RSPKTATDIEPARVQNDCGREAPPPXXXXXXXXXXXXXXXSGTKGAAAATA-AVPGYATTPGDAALREQRAKREARCRERAIDTALEQLRDSLFKESVAGGRSLREKAVDAALELARSAPLDMQGRVRRGAGRIDSLLGGEGPQPVGEWEVKHALRQGEEELRGKDLASRERIEEILATVRQETAATAASRSATNPPPPQHGSDAIDPDRFPHGTSLDDFFSLKDGPAEIEPQLAAAATGRPRLMLPLSGSQRFPHAEAKHDEGKGGAGTSGETPPEQAGREITRGPSTGRSAAVSDEVSTTSGEGPPGAARHARPRLPRKKKNYTAVPPEVAALFRAPLLVPRHLEPPIAGIAAAAVAAGGSRRVKPGARARIVG 812
BLAST of mRNA_E-siliculosus-1a_F_contig1106.722.1 vs. uniprot
Match: A0A7S2GLI8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLI8_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 9.060e-11 Identity = 49/176 (27.84%), Postives = 87/176 (49.43%), Query Frame = 1
Query: 1081 EDDDVYKNARKDLQQYMEGVRARTREDGTPKVTFPRNFDEIVGLMGRNDL-EDRSPDQASAASNRSGCAGKGAGGNSREGGGGKASGRETGDRAPPWTKYLLEEGLDRTKEFSRYRGMFAEEQTGEDRLMRGLAKMRELDVRLARVTGRARELKLMAREAAEQAERAAVVGTATSK 1605
E+ + + K L Q++ VR E G PKV FP N+D +V +MGR D+ E + Q+ + G G W+++ L+EGL++ ++RY+G+ + +++ + L +GLAK+ LD+ L T +++E+K+ A + A VG++ SK
Sbjct: 35 EEPESREELHKSLAQFLVSVRESKDEKGMPKVIFPENYDSVVNMMGRKDIAESKEATQSDRGDDPKGAPGAN------------------------WSQFALQEGLEQVGPYARYKGIMSADESQQQTLQQGLAKIHHLDLLLQAKTRKSKEIKVSADIRDDVVVSARSVGSSRSK 186 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1106.722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1106.722.1 >prot_E-siliculosus-1a_F_contig1106.722.1 ID=prot_E-siliculosus-1a_F_contig1106.722.1|Name=mRNA_E-siliculosus-1a_F_contig1106.722.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1192bp MALLGRADDIADAFANAASCCVQPASPRVGKRPRTTSSIFAAAAKDMLSPback to top mRNA from alignment at E-siliculosus-1a_F_contig1106:14970..21787- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1106.722.1 ID=mRNA_E-siliculosus-1a_F_contig1106.722.1|Name=mRNA_E-siliculosus-1a_F_contig1106.722.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6818bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1106:14970..21787- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1106:14970..21787- >mRNA_E-siliculosus-1a_F_contig1106.722.1 ID=mRNA_E-siliculosus-1a_F_contig1106.722.1|Name=mRNA_E-siliculosus-1a_F_contig1106.722.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=7152bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1106:14970..21787- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |