mRNA_E-siliculosus-1a_F_contig1105.719.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1105.719.1
Unique NamemRNA_E-siliculosus-1a_F_contig1105.719.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1105.719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1105contigE-siliculosus-1a_F_contig1105:19587..21588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size819
Model size819
Exons2
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-00_008340.1
Ec32 ortholog descriptionHypothetical protein
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927611.8932006-CDS-E-siliculosus-1a_F_contig1105:19586..203151622927611.8932006-CDS-E-siliculosus-1a_F_contig1105:19586..20315Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1105 19587..20315 +
1696318609.2715697-CDS-E-siliculosus-1a_F_contig1105:19586..203151696318609.2715697-CDS-E-siliculosus-1a_F_contig1105:19586..20315Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1105 19587..20315 +
1622927611.9036708-CDS-E-siliculosus-1a_F_contig1105:21498..215881622927611.9036708-CDS-E-siliculosus-1a_F_contig1105:21498..21588Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1105 21499..21588 +
1696318609.283141-CDS-E-siliculosus-1a_F_contig1105:21498..215881696318609.283141-CDS-E-siliculosus-1a_F_contig1105:21498..21588Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1105 21499..21588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1105.719.1prot_E-siliculosus-1a_F_contig1105.719.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1105 19587..21588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1105.719.1

>prot_E-siliculosus-1a_F_contig1105.719.1 ID=prot_E-siliculosus-1a_F_contig1105.719.1|Name=mRNA_E-siliculosus-1a_F_contig1105.719.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=273bp
MKSPTTHQELRRLRFKAVAVVNADDIESPLHASQEEAYSHHVPESKNELP
SPVVGAENGTEFESPTSSPSPSPSLTVALPCGEDQTTQTRGRMFRRRRDN
GTFMQAVAEGGHDTVECSGHDRSSKGEIITIKDGLARGAVVEWSHGSTGS
FAQAPVQSLRDGKHVLEASTYDHRRGPADATRRVAAAGVAGHQGRQFGCG
DGGRDVPKQQSRCANGTGDGCAEEPQEEDEAELSLDLSDCSNEKLGSLLE
QGRRRGSGRAGPCPSWRSDLGA*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1105:19587..21588+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1105.719.1 ID=mRNA_E-siliculosus-1a_F_contig1105.719.1|Name=mRNA_E-siliculosus-1a_F_contig1105.719.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2002bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1105:19587..21588+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAATCACCGACAACACATCAGGAGTTGCGCAGGTTGCGCTTCAAAGC
GGTCGCCGTCGTCAATGCCGACGATATCGAATCGCCGCTTCATGCCTCCC
AAGAAGAGGCCTACAGCCACCATGTGCCAGAATCGAAGAATGAGCTACCG
TCTCCAGTGGTTGGTGCAGAAAATGGTACAGAATTCGAGTCACCAACATC
ATCACCATCACCATCACCATCGTTAACAGTTGCGCTGCCGTGTGGGGAAG
ATCAGACAACCCAAACACGAGGACGTATGTTTCGCCGAAGAAGAGACAAT
GGAACGTTCATGCAGGCTGTAGCGGAAGGGGGTCATGATACGGTGGAGTG
TAGCGGCCACGACCGTAGTAGCAAGGGAGAGATAATCACAATCAAAGACG
GCTTGGCGAGGGGCGCAGTGGTAGAATGGTCCCATGGGTCCACCGGATCA
TTCGCTCAAGCACCAGTTCAGAGTTTACGGGATGGCAAACACGTGCTAGA
GGCATCTACGTACGACCATCGACGCGGGCCGGCAGATGCTACAAGGAGGG
TGGCGGCTGCTGGTGTTGCCGGGCATCAGGGTCGGCAGTTTGGATGCGGA
GACGGTGGGAGAGATGTCCCGAAACAACAAAGTAGATGCGCTAACGGAAC
GGGGGATGGATGTGCGGAAGAACCCCAGGAGGAAGACGAGGCGGAACTGT
CCCTTGATCTCTCTGATTGCAGCAATGAGGTGGGAGGGCTTCACGTTTTT
CAGGAAAGCGAATAGATTTCTTGATCTCATGGCGGCTGGTATATACATAT
ATATGTATAGAGATCAAATGGTGCCCTTGTCGTTAATTTATTCCCCCAGG
AAATCGAGGGAAAATGTTGTTGTTGTCCTTGTTGTCTTTGTTGTCAGAAT
CTCTAAACTGTTGTTGTTTTGGTCTCAATCTTTAACTCAGTTCCGGTCTC
TGCTTAGCGCTTTCGAACATCCCGACCGGTCCCACCTGAGCGGGAGATTT
CGGTGGTCACAGGCCAACTACCCGAAAAGGGTACACACTTCGCAACTAAT
AACAGAAACCAAACAGGACCTACGTATAACATCATCACAAAACTTTGTGG
GGGGTTATTCGATTCACTCGTCGTCCAACGCGAGTTTTAGACAACGTGAA
GACGACGATCCACAATTCCAAACGGCGTGAACTGAACACGTGGACTGGCT
GGCCGAGCTTTGAGTACACAGAGAACGGGCAAAGCCATGGAACCCTTACA
TAACCGGGTCGGACAAATCGTCAGGAACGTTGTCGGCAATCGTTCCGAAC
CAACTTCCCCATCATCGCTTCTCAAGGATTGAATTTGGCTTTGATATAAC
AGCGTTCTGTTATGTGTTTCGAAAACCGATTTTCTCGGCAAACACATAGG
TACTGTAGTAATTAGCACCTCTGAGCGCTTGGGATAACCATGGTCTCCCC
AACCATGGACTGTTTGGGGTCAACGATGACGTTCCTCGTTGAGTCCTCTG
TCTTTGGAGTCAGGCAACACGGCAGTGGCGCTCTTCGCATGCTCACCAAA
CCCCTCGAGAGAGGGGCATGAATCGACTACAAACAAATTCTGTGTCACTT
ATTTACACGATTGTATTGGAGTTGACACAGGCCTCGTGTACCAACGTAGG
GGCTACCGAACATCGCATTTAGGAACCTCAATACCTACGATGGACAAATT
AAATATTTTCTCTGACCTTAATCTGAACAGCACTACTGTAGTAGTAGTTT
TGTCCGCGTGACAAACAAATCTGAGGGGGTATCCGAAGATTGATTTCGAT
TCTTTTCCCAGCATATTTTGCCTCCTCGACCGCCTGGTGACTCTCGTCGA
AATTTCATCACCATGTGGTACAATCGGTCTGTGCGATCACATCGAACATG
TAACGCATACAGAAACTGGGAAGCCTGCTGGAGCAGGGTCGGCGGCGTGG
AAGTGGCCGAGCGGGGCCATGTCCGTCATGGAGGTCAGATCTCGGCGCGT
AG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1105:19587..21588+

>mRNA_E-siliculosus-1a_F_contig1105.719.1 ID=mRNA_E-siliculosus-1a_F_contig1105.719.1|Name=mRNA_E-siliculosus-1a_F_contig1105.719.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1638bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1105:19587..21588+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAATCACCGACAACACATCAGGAGTTGCGCAGGTTGCGCTTCAAAGC
GGTCGCCGTCGTCAATGCCGACGATATCGAATCGCCGCTTCATGCCTCCC
AAGAAGAGGCCTACAGCCACCATGTGCCAGAATCGAAGAATGAGCTACCG
TCTCCAGTGGTTGGTGCAGAAAATGGTACAGAATTCGAGTCACCAACATC
ATCACCATCACCATCACCATCGTTAACAGTTGCGCTGCCGTGTGGGGAAG
ATCAGACAACCCAAACACGAGGACGTATGTTTCGCCGAAGAAGAGACAAT
GGAACGTTCATGCAGGCTGTAGCGGAAGGGGGTCATGATACGGTGGAGTG
TAGCGGCCACGACCGTAGTAGCAAGGGAGAGATAATCACAATCAAAGACG
GCTTGGCGAGGGGCGCAGTGGTAGAATGGTCCCATGGGTCCACCGGATCA
TTCGCTCAAGCACCAGTTCAGAGTTTACGGGATGGCAAACACGTGCTAGA
GGCATCTACGTACGACCATCGACGCGGGCCGGCAGATGCTACAAGGAGGG
TGGCGGCTGCTGGTGTTGCCGGGCATCAGGGTCGGCAGTTTGGATGCGGA
GACGGTGGGAGAGATGTCCCGAAACAACAAAGTAGATGCGCTAACGGAAC
GGGGGATGGATGTGCGGAAGAACCCCAGGAGGAAGACGAGGCGGAACTGT
CCCTTGATCTCTCTGATTGCAGCAATGAGATGAAATCACCGACAACACAT
CAGGAGTTGCGCAGGTTGCGCTTCAAAGCGGTCGCCGTCGTCAATGCCGA
CGATATCGAATCGCCGCTTCATGCCTCCCAAGAAGAGGCCTACAGCCACC
ATGTGCCAGAATCGAAGAATGAGCTACCGTCTCCAGTGGTTGGTGCAGAA
AATGGTACAGAATTCGAGTCACCAACATCATCACCATCACCATCACCATC
GTTAACAGTTGCGCTGCCGTGTGGGGAAGATCAGACAACCCAAACACGAG
GACGTATGTTTCGCCGAAGAAGAGACAATGGAACGTTCATGCAGGCTGTA
GCGGAAGGGGGTCATGATACGGTGGAGTGTAGCGGCCACGACCGTAGTAG
CAAGGGAGAGATAATCACAATCAAAGACGGCTTGGCGAGGGGCGCAGTGG
TAGAATGGTCCCATGGGTCCACCGGATCATTCGCTCAAGCACCAGTTCAG
AGTTTACGGGATGGCAAACACGTGCTAGAGGCATCTACGTACGACCATCG
ACGCGGGCCGGCAGATGCTACAAGGAGGGTGGCGGCTGCTGGTGTTGCCG
GGCATCAGGGTCGGCAGTTTGGATGCGGAGACGGTGGGAGAGATGTCCCG
AAACAACAAAGTAGATGCGCTAACGGAACGGGGGATGGATGTGCGGAAGA
ACCCCAGGAGGAAGACGAGGCGGAACTGTCCCTTGATCTCTCTGATTGCA
GCAATGAGAAACTGGGAAGCCTGCTGGAGCAGGGTCGGCGGCGTGGAAGT
GGCCGAGCGGGGCCATGTCCGTCATGGAGGTCAGATCTCGGCGCGTAGAA
ACTGGGAAGCCTGCTGGAGCAGGGTCGGCGGCGTGGAAGTGGCCGAGCGG
GGCCATGTCCGTCATGGAGGTCAGATCTCGGCGCGTAG
back to top