mRNA_E-siliculosus-1a_F_contig11042.715.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11042.715.1
Unique NamemRNA_E-siliculosus-1a_F_contig11042.715.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11042.715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11042contigE-siliculosus-1a_F_contig11042:201..1502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size153
Model size153
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927611.5666378-CDS-E-siliculosus-1a_F_contig11042:200..2731622927611.5666378-CDS-E-siliculosus-1a_F_contig11042:200..273Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11042 201..273 +
1696318609.0653045-CDS-E-siliculosus-1a_F_contig11042:200..2731696318609.0653045-CDS-E-siliculosus-1a_F_contig11042:200..273Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11042 201..273 +
1622927611.5784347-CDS-E-siliculosus-1a_F_contig11042:1422..15021622927611.5784347-CDS-E-siliculosus-1a_F_contig11042:1422..1502Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11042 1423..1502 +
1696318609.0729313-CDS-E-siliculosus-1a_F_contig11042:1422..15021696318609.0729313-CDS-E-siliculosus-1a_F_contig11042:1422..1502Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11042 1423..1502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11042.715.1prot_E-siliculosus-1a_F_contig11042.715.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11042 201..1502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11042.715.1

>prot_E-siliculosus-1a_F_contig11042.715.1 ID=prot_E-siliculosus-1a_F_contig11042.715.1|Name=mRNA_E-siliculosus-1a_F_contig11042.715.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=51bp
GRIPPELGKLVALEKLSLGYNRLSGPIPEELGKLIALEGLYLARNNLSGD
I
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mRNA from alignment at E-siliculosus-1a_F_contig11042:201..1502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11042.715.1 ID=mRNA_E-siliculosus-1a_F_contig11042.715.1|Name=mRNA_E-siliculosus-1a_F_contig11042.715.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1302bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11042:201..1502+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCCGCATCCCACCGGAGCTGGGAAAGCTCGTAGCACTGGAGAAGCTCTC
TCTTGGATATAATCGACTCTCTGGTGAGGCATCGGTAATTTTTCAGAATG
TATTCCGCCCACGTAGACGCCAAGAAAGATTGACCCGCCTCTCTATTTTC
AAGAGGACGCCAACTAATAGTTGGCGTCCTCTTGAAAATAGAGAGGCGGG
TCAATATTTATTATTGTTTTTTCCCGACATTCCCCTAGAACTCTCACCGG
TTAGCTTGTTGCTCCAGAGGATGAGGCGCTGCAGTGCGCCGAGCTTTCCA
AGCTCCGGCGGAATGGGACCTGCCATCGGAAAAGAGAGTAGCGGGACAAA
GCAAATGTAAATGCCCCGGCTTTTGAGCACACCATTGTACTCGTGAGTGG
ACGCCAACTAGTACGCGTCCTCTTGAAAATAGAGAGGCGGGTGCTTGGTG
TACACGGCCCTTGGGGGATTCACGCTCGTTGCTTCCAACGAACTTCGAAA
TCTTACCTGAGAGCTTGTTTCCGCCCAGATATAGCTCCTTAAGTGCATTA
AGCTTCCCTAGCTCCTCCGGTATCGGTCCTGTACGGCGAATAACGAATTC
GAGTGCGGGAATTAGTAAAAAAATTCCCCGCGTTCTAGAACATCGAACCC
GCCAACTAGTTGGCGTCCACGAAATTTCACAACTCGCGGGATAACTTTTT
CTGTACTCTTCCAAACTGCCCTACGTTGACTCGTTCATCTACAGGCCACA
TTCCGCCGCAGCTCGGACAGCTTGGCGCCCTCCAGGTCCTCGGCCTCTCC
AGAAACAAGTTAGATGGTGAGTTGGAATAGATCGAAAAGAGTTTTGTTTT
CTTGCGAGTTCTGAAGTTTCGTGGACGCCTACTAGTTGGCGTCCACTTGA
AATTAGAGTGGCGAGATTCTTCCGAGCAACGAGAGCGCCCGACCTTTTTT
TCCGATTTCTGATACTGTCTTACTTCGACTCGCACTTCTACAGGACACAT
CCCACCGCAGCTTGGAGATCTCAGCGCCTTGACGCATCTCTACCTCAACT
CCAATAAGCTAGATGGTGAGTCCAGGAGATTGAACAGCATCTCTTTCTTT
CGAGTTCGGTTGAATAGCATGCGTGAATGGACGCCAACTAGTTGGCGTCC
ACTCACTGGTCTAGAACCCGGGGCATTATTTATGAATTCCCCGCTACTTT
GTAATCGTTTTTCGCCGTACAGGACCGATACCGGAGGAGCTAGGGAAGCT
TATTGCGCTAGAGGGGCTATATCTGGCCCGCAACAACCTCTCAGGTGATA
TT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11042:201..1502+

>mRNA_E-siliculosus-1a_F_contig11042.715.1 ID=mRNA_E-siliculosus-1a_F_contig11042.715.1|Name=mRNA_E-siliculosus-1a_F_contig11042.715.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=306bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11042:201..1502+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCCGCATCCCACCGGAGCTGGGAAAGCTCGTAGCACTGGAGAAGCTCTC
TCTTGGATATAATCGACTCTCTGGGCCGCATCCCACCGGAGCTGGGAAAG
CTCGTAGCACTGGAGAAGCTCTCTCTTGGATATAATCGACTCTCTGGACC
GATACCGGAGGAGCTAGGGAAGCTTATTGCGCTAGAGGGGCTATATCTGG
CCCGCAACAACCTCTCAGGTGATATTGACCGATACCGGAGGAGCTAGGGA
AGCTTATTGCGCTAGAGGGGCTATATCTGGCCCGCAACAACCTCTCAGGT
GATATT
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