mRNA_E-siliculosus-1a_F_contig11037.709.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11037.709.1
Unique NamemRNA_E-siliculosus-1a_F_contig11037.709.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11037.709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11037contigE-siliculosus-1a_F_contig11037:510..887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size378
Model size379
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927610.9321973-CDS-E-siliculosus-1a_F_contig11037:509..8871622927610.9321973-CDS-E-siliculosus-1a_F_contig11037:509..887Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11037 510..887 +
1696318608.6987565-CDS-E-siliculosus-1a_F_contig11037:509..8871696318608.6987565-CDS-E-siliculosus-1a_F_contig11037:509..887Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11037 510..887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11037.709.1prot_E-siliculosus-1a_F_contig11037.709.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11037 510..887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11037.709.1

>prot_E-siliculosus-1a_F_contig11037.709.1 ID=prot_E-siliculosus-1a_F_contig11037.709.1|Name=mRNA_E-siliculosus-1a_F_contig11037.709.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=126bp
RDIKQGYERGKKSPTDLGDPHRGYEEACQRCKAYRMVYLAAVENEERVGT
MCLSEYQAKQCSSKANQDGRSNNSRLKKNKNKRRNNLQFRRSTKTRDGTK
RDLPSSSAHQNRPTTRPVPKSMSTS*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig11037:510..887+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11037.709.1 ID=mRNA_E-siliculosus-1a_F_contig11037.709.1|Name=mRNA_E-siliculosus-1a_F_contig11037.709.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=378bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11037:510..887+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGGACATCAAGCAAGGCTATGAGAGAGGTAAGAAATCCCCAACAGATCT
AGGAGATCCACATCGTGGGTACGAGGAGGCATGTCAGCGATGTAAGGCTT
ATCGAATGGTATATCTAGCAGCTGTTGAGAACGAAGAAAGGGTAGGAACG
ATGTGTCTATCAGAGTATCAAGCCAAACAATGTTCGTCTAAAGCAAACCA
AGACGGGCGATCAAACAATTCCCGTCTCAAAAAAAACAAAAACAAGCGTC
GGAACAACCTCCAATTCAGAAGGTCAACCAAAACAAGAGACGGAACAAAA
CGCGACCTCCCTTCCTCATCGGCACATCAAAACAGACCAACAACACGCCC
TGTGCCGAAGTCGATGTCAACGTCATAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11037:510..887+

>mRNA_E-siliculosus-1a_F_contig11037.709.1 ID=mRNA_E-siliculosus-1a_F_contig11037.709.1|Name=mRNA_E-siliculosus-1a_F_contig11037.709.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=756bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11037:510..887+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGGACATCAAGCAAGGCTATGAGAGAGGTAAGAAATCCCCAACAGATCT
AGGAGATCCACATCGTGGGTACGAGGAGGCATGTCAGCGATGTAAGGCTT
ATCGAATGGTATATCTAGCAGCTGTTGAGAACGAAGAAAGGGTAGGAACG
ATGTGTCTATCAGAGTATCAAGCCAAACAATGTTCGTCTAAAGCAAACCA
AGACGGGCGATCAAACAATTCCCGTCTCAAAAAAAACAAAAACAAGCGTC
GGAACAACCTCCAATTCAGAAGGTCAACCAAAACAAGAGACGGAACAAAA
CGCGACCTCCCTTCCTCATCGGCACATCAAAACAGACCAACAACACGCCC
TGTGCCGAAGTCGATGTCAACGTCATAGCGGGACATCAAGCAAGGCTATG
AGAGAGGTAAGAAATCCCCAACAGATCTAGGAGATCCACATCGTGGGTAC
GAGGAGGCATGTCAGCGATGTAAGGCTTATCGAATGGTATATCTAGCAGC
TGTTGAGAACGAAGAAAGGGTAGGAACGATGTGTCTATCAGAGTATCAAG
CCAAACAATGTTCGTCTAAAGCAAACCAAGACGGGCGATCAAACAATTCC
CGTCTCAAAAAAAACAAAAACAAGCGTCGGAACAACCTCCAATTCAGAAG
GTCAACCAAAACAAGAGACGGAACAAAACGCGACCTCCCTTCCTCATCGG
CACATCAAAACAGACCAACAACACGCCCTGTGCCGAAGTCGATGTCAACG
TCATAG
back to top