mRNA_E-siliculosus-1a_F_contig11011.701.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11011.701.1
Unique NamemRNA_E-siliculosus-1a_F_contig11011.701.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11011.701.1 vs. uniprot
Match: D7G6Q2_ECTSI (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Q2_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.570e-21
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 ELVAATTLPGVASMPNFMEVIGDFDFWELIRFEKRHFRLLLEFVQLPMEIEIYR 162
            ELVAATTLPGVASMPNFM+VIG FDFWEL RFEKRHFRLL+E ++LP  IEIYR
Sbjct:   52 ELVAATTLPGVASMPNFMDVIGGFDFWELTRFEKRHFRLLVELLELPEMIEIYR 105
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BLAST of mRNA_E-siliculosus-1a_F_contig11011.701.1 vs. uniprot
Match: A0A6H5KAA1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA1_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.450e-8
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 ELVAATTLPGVASMPNFMEVIGDFDFWELIRFEKRHFRLLLEFVQLPMEIEIYR 162
            ELVA T L GV    +FMEV+G FDF E+ RFEK HFR LL  ++LP E+EI R
Sbjct:   52 ELVAPTQLGGVRY--DFMEVLGGFDFKEVFRFEKSHFRQLLAALELPPELEIRR 103
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BLAST of mRNA_E-siliculosus-1a_F_contig11011.701.1 vs. uniprot
Match: A0A6H5KC62_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC62_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 6.750e-7
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 ELVAATTLPGVASMPNFMEVIGDFDFWELIRFEKRHFRLLLEFVQLPMEIEIYR 162
            ELVA T L G+    +FMEV+G FDF EL+RFE+ HFR LL  ++ P E  I R
Sbjct:   52 ELVAPTQLDGMRY--DFMEVLGGFDFKELLRFEQPHFRRLLAALEFPPEFVISR 103
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BLAST of mRNA_E-siliculosus-1a_F_contig11011.701.1 vs. uniprot
Match: A0A6H5K3T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T4_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.330e-6
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    1 ELVAATTLPGVASMPNFMEVIGDFDFWELIRFEKRHFRLLLEFVQLPMEIEI 156
            ELVA T L GV    +FMEV+G FDF EL+RFEK HFR L+  ++LP E  I
Sbjct:   52 ELVAPTHLDGVRY--DFMEVLGGFDFKELLRFEKPHFRRLVAALELPPEFVI 101
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BLAST of mRNA_E-siliculosus-1a_F_contig11011.701.1 vs. uniprot
Match: A0A6H5K122_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K122_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 3.590e-6
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 ELVAATTLPGVASMPNFMEVIGDFDFWELIRFEKRHFRLLLEFVQLPMEIEIYR 162
            ELVA T L G+    +FMEV+  FDF EL+RFEK HFR LL  ++LP E  I R
Sbjct:   52 ELVAPTQLDGMRY--DFMEVLDGFDFKELLRFEKPHFRRLLTALELPPEFVISR 103
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BLAST of mRNA_E-siliculosus-1a_F_contig11011.701.1 vs. uniprot
Match: A0A6H5KDJ8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ8_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 3.180e-5
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   46 NFMEVIGDFDFWELIRFEKRHFRLLLEFVQLPMEIEIYR 162
            +FMEV+G FDF EL+RFEK HFR LL  ++LP E  I R
Sbjct:    4 DFMEVLGGFDFKELLRFEKPHFRRLLAALELPPEFVISR 42
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BLAST of mRNA_E-siliculosus-1a_F_contig11011.701.1 vs. uniprot
Match: A0A6H5JTB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB7_9PHAE)

HSP 1 Score: 46.2 bits (108), Expect = 3.330e-5
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   46 NFMEVIGDFDFWELIRFEKRHFRLLLEFVQLPMEIEIYR 162
            +FMEV+G FDF EL+RFEK +FR LL  ++LP E  I R
Sbjct:   36 DFMEVLGGFDFKELLRFEKPNFRRLLAALELPPEFVISR 74
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BLAST of mRNA_E-siliculosus-1a_F_contig11011.701.1 vs. uniprot
Match: A0A6H5KNF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF3_9PHAE)

HSP 1 Score: 46.6 bits (109), Expect = 3.920e-5
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   46 NFMEVIGDFDFWELIRFEKRHFRLLLEFVQLPMEIEIYR 162
            +FM V+G FDF EL+RFEK HFR LL  ++LP E  I R
Sbjct:   60 DFMAVLGGFDFKELLRFEKPHFRRLLAALELPPEFVISR 98
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11011.701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G6Q2_ECTSI1.570e-2183.33DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KAA1_9PHAE4.450e-859.26DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KC62_9PHAE6.750e-753.70Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3T4_9PHAE1.330e-657.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K122_9PHAE3.590e-655.56DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KDJ8_9PHAE3.180e-561.54DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JTB7_9PHAE3.330e-558.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNF3_9PHAE3.920e-558.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11011contigE-siliculosus-1a_F_contig11011:1623..1787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size165
Model size165
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
Ec32 orthologEc-26_000670.1
Ec32 ortholog descriptionHypothetical protein
EggNOG OGs2AWDH@1,2RZYI@2759
EggNOG free text desc.DDE superfamily endonuclease
Seed eggNOG ortholog2880.D7G6Q2
Seed ortholog evalue1.4e-17
Seed ortholog score94.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927609.076104-CDS-E-siliculosus-1a_F_contig11011:1622..17871622927609.076104-CDS-E-siliculosus-1a_F_contig11011:1622..1787Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11011 1623..1787 +
1696318608.0475416-CDS-E-siliculosus-1a_F_contig11011:1622..17871696318608.0475416-CDS-E-siliculosus-1a_F_contig11011:1622..1787Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11011 1623..1787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11011.701.1prot_E-siliculosus-1a_F_contig11011.701.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11011 1623..1787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11011.701.1

>prot_E-siliculosus-1a_F_contig11011.701.1 ID=prot_E-siliculosus-1a_F_contig11011.701.1|Name=mRNA_E-siliculosus-1a_F_contig11011.701.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=55bp
ELVAATTLPGVASMPNFMEVIGDFDFWELIRFEKRHFRLLLEFVQLPMEI
EIYR*
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mRNA from alignment at E-siliculosus-1a_F_contig11011:1623..1787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11011.701.1 ID=mRNA_E-siliculosus-1a_F_contig11011.701.1|Name=mRNA_E-siliculosus-1a_F_contig11011.701.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=165bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11011:1623..1787+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGCTGGTAGCAGCAACGACGCTCCCTGGGGTGGCTTCTATGCCCAACTT
CATGGAGGTCATAGGCGACTTCGACTTTTGGGAGCTAATCAGGTTCGAGA
AACGGCATTTCCGTCTGCTTCTGGAGTTTGTTCAGCTGCCGATGGAGATC
GAGATTTACAGGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11011:1623..1787+

>mRNA_E-siliculosus-1a_F_contig11011.701.1 ID=mRNA_E-siliculosus-1a_F_contig11011.701.1|Name=mRNA_E-siliculosus-1a_F_contig11011.701.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11011:1623..1787+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGCTGGTAGCAGCAACGACGCTCCCTGGGGTGGCTTCTATGCCCAACTT
CATGGAGGTCATAGGCGACTTCGACTTTTGGGAGCTAATCAGGTTCGAGA
AACGGCATTTCCGTCTGCTTCTGGAGTTTGTTCAGCTGCCGATGGAGATC
GAGATTTACAGGTAGGAGCTGGTAGCAGCAACGACGCTCCCTGGGGTGGC
TTCTATGCCCAACTTCATGGAGGTCATAGGCGACTTCGACTTTTGGGAGC
TAATCAGGTTCGAGAAACGGCATTTCCGTCTGCTTCTGGAGTTTGTTCAG
CTGCCGATGGAGATCGAGATTTACAGGTAG
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