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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1100.698.1 vs. uniprot
Match: D7FNK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK4_ECTSI) HSP 1 Score: 892 bits (2305), Expect = 0.000e+0 Identity = 477/507 (94.08%), Postives = 491/507 (96.84%), Query Frame = 1
Query: 1 IKRVGQLKSTLAKAPDPPAVAAELALLYLVLSDQRGALKSFQLAAKPSPERVPTKEETEKREMQERRLMLLNKDRRAEALAQLEAQDAERERXREATEHARRRQAATGIYRCFLEMKQPVQAAEAARARLDMCETREERQQVETEIRETLLKYDGLIEPEATNQGAWLTESAGALSDLHADVLRSLTGFSMHEKSASPSSCWGTSSSGGAMEAVDDPEEGSCAPGMQISYRGGGERETTGRGVGVSADGYRGNNLLEGGDSTLTKEGAFSATLCKGAGSSRGSTCGGNGPRDVAATTAEVAPDRMNNAKEERDVRRSRLRDLGHLLVRKRQFTASRQAFDDARRGGPDEALLRERNKARTPGFFVDGALEEASPKIHLELDSRWQGGVETDDIRRRALADFTGFTGLHRGAETLVAAVPAAGWADGGNAIASEIAYAERLSRSRIQVDSLQQHVRTGGGATRGIDGAGPCVAAGRAGGIGAKQPTAA-SGLMLRHLVPAKDITANIQ 1518
+KRVGQLKSTLAKAPDPPAVAAELALLYLVLSDQRGALKSFQLAAKPSPERVPTKEET+KREMQERRLMLLNKDRRAEALAQLEAQDAERER REATEHARRR+AATG+YRC LEMKQPVQAAEAARARLDMCETREERQQVETEI ETLLKYDGLIEPEATNQGAWLTESAGALSDLHADVLRSLTGFSMHEKSASPSSCWGTSSSGGAMEAVDDPEEGSCAPGM+I++RGGG ETTGR VGVSADGYRGNNLLEGGDSTLTKEGAFSAT+C+GAGSSRG TCGGNGPRDVAATTAEVAPDRMNNA+EERDVRRSRL+DLGHLLVRKRQFTASRQAFDDARRGGPDEA LRERNK RTPGFF+DGALEEASPKI LELDSRWQGGVETDDIRRRALA+FTGFTGLHRGAETLVA VPAAGWADGGNAIASEIAYAERLSRSRIQVDSLQQHVRTGGGATRGI GAG CVAAGRAGG GAKQPTAA SGLMLRHLVPAKD+ ANIQ
Sbjct: 1 MKRVGQLKSTLAKAPDPPAVAAELALLYLVLSDQRGALKSFQLAAKPSPERVPTKEETDKREMQERRLMLLNKDRRAEALAQLEAQDAEREREREATEHARRRKAATGVYRCLLEMKQPVQAAEAARARLDMCETREERQQVETEIHETLLKYDGLIEPEATNQGAWLTESAGALSDLHADVLRSLTGFSMHEKSASPSSCWGTSSSGGAMEAVDDPEEGSCAPGMEINHRGGGV-ETTGRAVGVSADGYRGNNLLEGGDSTLTKEGAFSATVCEGAGSSRGYTCGGNGPRDVAATTAEVAPDRMNNAEEERDVRRSRLQDLGHLLVRKRQFTASRQAFDDARRGGPDEASLRERNKGRTPGFFIDGALEEASPKIRLELDSRWQGGVETDDIRRRALANFTGFTGLHRGAETLVAVVPAAGWADGGNAIASEIAYAERLSRSRIQVDSLQQHVRTGGGATRGIGGAGACVAAGRAGGAGAKQPTAAASGLMLRHLVPAKDVIANIQ 506
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 0 |
| Stop | 1 |
| Cds size | 1524 |
| Model size | 1524 |
| Exons | 5 |
| Ec32 ortholog | Ec-01_005120.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1100.698.1 >prot_E-siliculosus-1a_F_contig1100.698.1 ID=prot_E-siliculosus-1a_F_contig1100.698.1|Name=mRNA_E-siliculosus-1a_F_contig1100.698.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=508bp
IKRVGQLKSTLAKAPDPPAVAAELALLYLVLSDQRGALKSFQLAAKPSPE RVPTKEETEKREMQERRLMLLNKDRRAEALAQLEAQDAEREREREATEHA RRRQAATGIYRCFLEMKQPVQAAEAARARLDMCETREERQQVETEIRETL LKYDGLIEPEATNQGAWLTESAGALSDLHADVLRSLTGFSMHEKSASPSS CWGTSSSGGAMEAVDDPEEGSCAPGMQISYRGGGERETTGRGVGVSADGY RGNNLLEGGDSTLTKEGAFSATLCKGAGSSRGSTCGGNGPRDVAATTAEV APDRMNNAKEERDVRRSRLRDLGHLLVRKRQFTASRQAFDDARRGGPDEA LLRERNKARTPGFFVDGALEEASPKIHLELDSRWQGGVETDDIRRRALAD FTGFTGLHRGAETLVAAVPAAGWADGGNAIASEIAYAERLSRSRIQVDSL QQHVRTGGGATRGIDGAGPCVAAGRAGGIGAKQPTAASGLMLRHLVPAKD ITANIQT* back to topmRNA from alignment at E-siliculosus-1a_F_contig1100:24631..28371- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1100.698.1 ID=mRNA_E-siliculosus-1a_F_contig1100.698.1|Name=mRNA_E-siliculosus-1a_F_contig1100.698.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3741bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1100:24631..28371- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) ATAAAACGAGTTGGGCAGTTGAAGTCTACCCTGGCGAAGGCCCCAGACCC
CCCCGCGGTCGCGGCCGAGCTGGCACTGCTATACCTTGTACTCTCCGACC
AAAGGGGCGCTTTGAAGAGCTTTCAGCTGGCCGCCAAGCCATCTCCTGGT
AAGTAGACACCCAACAGTGAACCCCGAAAGCGAACATCTTTACGACAGGC
CGTCACCTTTTTGTTCATAATTTTTCGTCTAGACTCTGTACTTCAAGCAG
TTTACTATCCTACACTCTCCTCGGAGTTTCCAGCTACCTTACGACCTGGC
TTCTCTAGCGGAAGAGCTCCGATCCGGGGTCACACACGGTTTGGTTCAAT
ATCAACGTACTAGTATCACCGTGCTATTTTTGTTGCCTTCGCACAAAGCG
CTCTATCCGCTTCCTCCGTATTTCATGCATATCATCTCCATCATCATGAA
GTTTCAAACAACAGCCACTTCAAACCTTGTAGGGACAGCGACATCTCTCG
AACGCATCTCCTAGAAAGGAAAGGACGGTATTCAGGTTCGACGGAATAAC
TTGGTGGTGGTAGCGAGTGCCTAAAATATGCGCAGAACTCCGGATACATA
TACCCTTGCCTGACCATCTCTTGAGAAGAAAAACTTCAACCACAATAATA
CGATAACGTCCTGACTTACCTTGTTCTCACACGGATTCAAATCCGACGTG
AGGGATCGGACAGCGTACAGAACCCAACCATACAGAAAAGAAGAAGGTAC
AAACATTTCTTTACCGTGCCCGTATCCGAACGCTAAAACCTAGTGGTTTG
CTTCCCGCTAATCTTTTGATGTTTATCTGTTCTTGTTCGCTCGTTTGTGT
GTCACCATATCTTATCCGACGGCGCGGGTTGCTACCCTTCGGTGGTTTTT
GTTTCGCTTCAACCCCTTTCTCTGCCCCCACTTGTTCCCCTCTCTTTCAC
GTCCCAACCACCTCAGAACGCGTCCCGACGAAGGAAGAGACGGAAAAGAG
GGAGATGCAAGAGCGCCGACTGATGTTGCTTAACAAGGACCGGAGAGCCG
AGGCTCTCGCCCAGCTGGAGGCCCAAGACGCAGAGAGGGAACGAGAGCGC
GAAGCAACCGAGCACGCCAGGAGGAGACAGGCGGCCACAGGAATCTACCG
GTGCTTCCTGGAGATGAAGCAGCCCGTCCAGGCGGCGGAGGCTGCGAGAG
CGAGGCTCGACATGTGCGAGACGCGCGAAGAGCGCCAGCAGGTACATGTA
GTACATAGAGTACTTGCTTCTCGATATACAGTCATTCCAACTCAAGGGAT
CTTCATGCTTCGTCGGTATTTTCTACTGGTTCTCTGCTGCCACGTGATTC
AGCGCAGCGGCACCATCCAATGATGCTCGTGGAACCTCTTCAGCACGCTC
GTTGGTTTGATTCCTAACACATGCCGAGTGTGAGTGAGTTGTTGGAGTTT
TACTATTAGTACGAGAGGTTGGTTCCACGCCGCAAGCCATGTTGAAAAAG
CGTTGCAAAGGCTGACGTTCCGGAGAACAGCGTGGGCCGAGGAGCGCGGG
GGCGGGGGGGCGTCGTCTTTGCTGCTCTCCTTGGGGTCTGAATTCCTTCT
GTTGCATTCATTGGTACGAAGAGAGATGCGAAGGGTTTCTCGCCAAATCA
CTCAAACAACAAGCACAACAACAGCGATACGCCACCACGGCAAGCTCAAG
AGCCCACAATGCGGCAACGTTGAGCGCTGTATGTGTCTACGAAAATCTCC
GTTTGTTTCAATTGCAACACTTCGCGAGACGTCTTGGTCACGCCACCGCT
AGGTCGAGACGGAAATTCGTGAGACGTTGCTCAAGTACGATGGTCTAATC
GAGCCGGAGGCCACGAACCAAGGGGCGTGGCTCACGGAATCCGCGGGGGC
TCTGTCGGACCTTCACGCGGACGTGCTCCGGAGTCTGACCGGCTTTTCCA
TGCATGAAAAAAGTGCATCTCCATCATCTTGCTGGGGCACCTCTTCCTCA
GGAGGAGCAATGGAAGCGGTAGACGACCCGGAAGAGGGATCGTGTGCGCC
AGGAATGCAAATCAGCTACCGGGGAGGCGGCGAACGGGAAACAACAGGAA
GAGGCGTCGGCGTCAGCGCGGACGGTTACCGAGGGAACAATCTGCTGGAG
GGCGGTGACAGCACACTGACCAAGGAGGGCGCCTTCTCAGCTACTCTCTG
TAAAGGGGCGGGTTCCAGCAGGGGGTCCACGTGCGGTGGCAACGGACCGC
GTGATGTTGCGGCAACAACAGCAGAAGTGGCCCCCGATAGAATGAACAAC
GCCAAGGAGGAACGAGACGTAAGAAGGAGCAGGCTGCGGGACCTCGGGCA
TCTTCTCGTTCGCAAGAGGCAGTTTACCGCTAGTAGACAGGTACGACGAC
CTGTCCTGCGTTGGTGCGGCCAGACGATAATTTAACAGTGCTACGAAAGA
CAGCGATGATTGGTGTTCGGTGACGGGGCTCCATGTCTATCGAGACCAAA
TCTATTCCATTCTAAGAGTGCTTGCAAGGTCGGGTCTGGACGTCTCCAAG
ACATAAAGCATTATTTACAAACGTGCACGATTGATTCCGCGGCGCATGTA
CCCCGTGCCCGACACCAGGACCAACCTCTCAAAACCTTCCGAACATCCCG
CGTTTCGTTGTGCTGGAACACCCTTCCAACACCACACGTTGCTGGGGTGA
TGGGGGACGAGTCTTTAAGCTCTAAAGTAAATAGTTCGCGACTGTGTTCT
TTCGGCCGACCCGCTAGCCCGCTAGCCCTTGGGCATGCCTCCTCCTCCAT
TAACACATTCCCATCAACCAGGCTTTCGACGATGCCAGGCGTGGCGGTCC
CGACGAGGCTTTACTACGGGAGCGGAACAAGGCTCGAACTCCCGGTTTCT
TTGTCGATGGCGCTCTCGAGGAAGCGTCCCCGAAGATTCATCTGGAGCTA
GACTCCAGGTTGGTATCGTATTTCAATAAACCCCAGACTGAGTAATTCAA
ACGGCGAAAGTTGGATTTTCTTGTTATCTGGAAAAATGCATCCACGTTGT
CCAGACGCCGGTCTGGGCGAGGGTCCAAAGACAAGTCGTCAGCGCATACT
TGCGTGCGGTCAAGGTTACCTGGAGAACATTGATTTGTGGCAGGCCAACA
TGCACCGCCGTCGCGTCGGACAATTAGTGGTAATAATATCGACTTCGTTG
ACATGATGACTGATGATAAATATGTGGTCGCTTGTGCAGAGTATCTTGTT
TGGTGTTTTGCTATATCGTACTACAGGGCCGTCGAAGCCGCGTAGGTACA
CGCAAACTAATCCTACCGAGCTGCTGAACACAAGAAAATCTTTCTTTCGA
CAAAACCAACGTTAGGTGGCAGGGCGGGGTGGAGACCGACGATATCCGTC
GTCGCGCACTCGCCGACTTCACGGGCTTCACGGGGCTCCACCGGGGAGCC
GAGACCCTTGTGGCCGCGGTGCCGGCGGCGGGGTGGGCGGACGGCGGCAA
CGCTATCGCTTCCGAGATCGCGTACGCGGAGCGCCTCTCTAGGTCGAGGA
TTCAGGTTGATTCGCTACAGCAGCATGTACGGACGGGTGGGGGAGCGACA
CGTGGCATCGACGGGGCGGGGCCGTGTGTGGCAGCCGGCAGAGCTGGTGG
CATCGGTGCAAAGCAGCCAACAGCCGCTTCGGGGCTCATGCTGCGCCACT
TGGTACCAGCCAAGGATATAACCGCTAATATACAGACGTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1100:24631..28371- >mRNA_E-siliculosus-1a_F_contig1100.698.1 ID=mRNA_E-siliculosus-1a_F_contig1100.698.1|Name=mRNA_E-siliculosus-1a_F_contig1100.698.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3048bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1100:24631..28371- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) ATAAAACGAGTTGGGCAGTTGAAGTCTACCCTGGCGAAGGCCCCAGACCC CCCCGCGGTCGCGGCCGAGCTGGCACTGCTATACCTTGTACTCTCCGACC AAAGGGGCGCTTTGAAGAGCTTTCAGCTGGCCGCCAAGCCATCTCCTGAT AAAACGAGTTGGGCAGTTGAAGTCTACCCTGGCGAAGGCCCCAGACCCCC CCGCGGTCGCGGCCGAGCTGGCACTGCTATACCTTGTACTCTCCGACCAA AGGGGCGCTTTGAAGAGCTTTCAGCTGGCCGCCAAGCCATCTCCTGAACG CGTCCCGACGAAGGAAGAGACGGAAAAGAGGGAGATGCAAGAGCGCCGAC TGATGTTGCTTAACAAGGACCGGAGAGCCGAGGCTCTCGCCCAGCTGGAG GCCCAAGACGCAGAGAGGGAACGAGAGCGCGAAGCAACCGAGCACGCCAG GAGGAGACAGGCGGCCACAGGAATCTACCGGTGCTTCCTGGAGATGAAGC AGCCCGTCCAGGCGGCGGAGGCTGCGAGAGCGAGGCTCGACATGTGCGAG ACGCGCGAAGAGCGCCAGCAGAACGCGTCCCGACGAAGGAAGAGACGGAA AAGAGGGAGATGCAAGAGCGCCGACTGATGTTGCTTAACAAGGACCGGAG AGCCGAGGCTCTCGCCCAGCTGGAGGCCCAAGACGCAGAGAGGGAACGAG AGCGCGAAGCAACCGAGCACGCCAGGAGGAGACAGGCGGCCACAGGAATC TACCGGTGCTTCCTGGAGATGAAGCAGCCCGTCCAGGCGGCGGAGGCTGC GAGAGCGAGGCTCGACATGTGCGAGACGCGCGAAGAGCGCCAGCAGGTCG AGACGGAAATTCGTGAGACGTTGCTCAAGTACGATGGTCTAATCGAGCCG GAGGCCACGAACCAAGGGGCGTGGCTCACGGAATCCGCGGGGGCTCTGTC GGACCTTCACGCGGACGTGCTCCGGAGTCTGACCGGCTTTTCCATGCATG AAAAAAGTGCATCTCCATCATCTTGCTGGGGCACCTCTTCCTCAGGAGGA GCAATGGAAGCGGTAGACGACCCGGAAGAGGGATCGTGTGCGCCAGGAAT GCAAATCAGCTACCGGGGAGGCGGCGAACGGGAAACAACAGGAAGAGGCG TCGGCGTCAGCGCGGACGGTTACCGAGGGAACAATCTGCTGGAGGGCGGT GACAGCACACTGACCAAGGAGGGCGCCTTCTCAGCTACTCTCTGTAAAGG GGCGGGTTCCAGCAGGGGGTCCACGTGCGGTGGCAACGGACCGCGTGATG TTGCGGCAACAACAGCAGAAGTGGCCCCCGATAGAATGAACAACGCCAAG GAGGAACGAGACGTAAGAAGGAGCAGGCTGCGGGACCTCGGGCATCTTCT CGTTCGCAAGAGGCAGTTTACCGCTAGTAGACAGGTCGAGACGGAAATTC GTGAGACGTTGCTCAAGTACGATGGTCTAATCGAGCCGGAGGCCACGAAC CAAGGGGCGTGGCTCACGGAATCCGCGGGGGCTCTGTCGGACCTTCACGC GGACGTGCTCCGGAGTCTGACCGGCTTTTCCATGCATGAAAAAAGTGCAT CTCCATCATCTTGCTGGGGCACCTCTTCCTCAGGAGGAGCAATGGAAGCG GTAGACGACCCGGAAGAGGGATCGTGTGCGCCAGGAATGCAAATCAGCTA CCGGGGAGGCGGCGAACGGGAAACAACAGGAAGAGGCGTCGGCGTCAGCG CGGACGGTTACCGAGGGAACAATCTGCTGGAGGGCGGTGACAGCACACTG ACCAAGGAGGGCGCCTTCTCAGCTACTCTCTGTAAAGGGGCGGGTTCCAG CAGGGGGTCCACGTGCGGTGGCAACGGACCGCGTGATGTTGCGGCAACAA CAGCAGAAGTGGCCCCCGATAGAATGAACAACGCCAAGGAGGAACGAGAC GTAAGAAGGAGCAGGCTGCGGGACCTCGGGCATCTTCTCGTTCGCAAGAG GCAGTTTACCGCTAGTAGACAGGCTTTCGACGATGCCAGGCGTGGCGGTC CCGACGAGGCTTTACTACGGGAGCGGAACAAGGCTCGAACTCCCGGTTTC TTTGTCGATGGCGCTCTCGAGGAAGCGTCCCCGAAGATTCATCTGGAGCT AGACTCCAGGCTTTCGACGATGCCAGGCGTGGCGGTCCCGACGAGGCTTT ACTACGGGAGCGGAACAAGGCTCGAACTCCCGGTTTCTTTGTCGATGGCG CTCTCGAGGAAGCGTCCCCGAAGATTCATCTGGAGCTAGACTCCAGGTGG CAGGGCGGGGTGGAGACCGACGATATCCGTCGTCGCGCACTCGCCGACTT CACGGGCTTCACGGGGCTCCACCGGGGAGCCGAGACCCTTGTGGCCGCGG TGCCGGCGGCGGGGTGGGCGGACGGCGGCAACGCTATCGCTTCCGAGATC GCGTACGCGGAGCGCCTCTCTAGGTCGAGGATTCAGGTTGATTCGCTACA GCAGCATGTACGGACGGGTGGGGGAGCGACACGTGGCATCGACGGGGCGG GGCCGTGTGTGGCAGCCGGCAGAGCTGGTGGCATCGGTGCAAAGCAGCCA ACAGCCGCTTCGGGGCTCATGCTGCGCCACTTGGTACCAGCCAAGGATAT AACCGCTAATATACAGACGTGAGTGGCAGGGCGGGGTGGAGACCGACGAT ATCCGTCGTCGCGCACTCGCCGACTTCACGGGCTTCACGGGGCTCCACCG GGGAGCCGAGACCCTTGTGGCCGCGGTGCCGGCGGCGGGGTGGGCGGACG GCGGCAACGCTATCGCTTCCGAGATCGCGTACGCGGAGCGCCTCTCTAGG TCGAGGATTCAGGTTGATTCGCTACAGCAGCATGTACGGACGGGTGGGGG AGCGACACGTGGCATCGACGGGGCGGGGCCGTGTGTGGCAGCCGGCAGAG CTGGTGGCATCGGTGCAAAGCAGCCAACAGCCGCTTCGGGGCTCATGCTG CGCCACTTGGTACCAGCCAAGGATATAACCGCTAATATACAGACGTGA back to top
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